genome.fa.s146.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  41  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4613095--4618136	906	5.6	900	85	3	6364	25	24	24	25	2.00
4617032--4617085	26	2.1	26	96	0	99	27	20	25	25	1.99
4618110--4618162	26	2.0	26	92	0	88	28	18	24	28	1.98
4617919--4618321	185	2.2	185	83	0	475	22	27	28	22	1.99
4620280--4620332	26	2.0	26	96	0	97	28	26	18	26	1.98
4622060--4622112	26	2.0	26	96	0	97	28	26	18	26	1.98
4619559--4623751	902	4.7	895	86	4	5828	26	24	23	25	2.00
4622965--4623014	26	1.9	26	95	0	91	26	22	22	30	1.99
4625114--4625166	26	2.0	26	92	0	88	26	22	20	30	1.98
4626487--4626544	26	2.2	26	81	3	62	60	10	8	20	1.55
4626910--4626962	26	2.0	26	92	0	88	28	24	18	28	1.98
4624601--4682608	896	63.7	897	70	13	22013	25	24	24	25	2.00
4627807--4627859	26	2.0	26	88	0	79	28	22	18	30	1.98
4629568--4629620	26	2.0	26	96	0	97	28	24	20	26	1.99
4629410--4629817	185	2.2	184	83	4	500	21	26	27	24	1.99
4630645--4630697	26	2.0	26	96	0	97	26	26	18	28	1.98
4632392--4632444	26	2.0	26	92	0	88	26	26	20	26	1.99
4635085--4635137	26	2.0	26	89	7	81	26	24	20	28	1.99
4635981--4636033	26	2.0	26	92	0	88	26	26	18	28	1.98
4636874--4636926	26	2.0	26	88	0	79	30	24	16	28	1.97
4637770--4637822	26	2.0	26	88	0	79	28	26	18	26	1.98
4638666--4638718	26	2.0	26	88	0	79	26	24	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4639569--4639621	26	2.0	26	92	0	88	26	24	22	26	2.00
4640476--4642935	902	2.7	895	88	3	3560	26	24	24	24	2.00
4642261--4643634	695	2.0	700	89	3	2102	27	23	23	25	2.00
4643826--4643878	26	2.0	26	96	0	97	28	26	18	26	1.98
4644722--4644774	26	2.0	26	100	0	106	26	26	20	26	1.99
4642967--4646468	891	3.9	892	86	3	4568	25	24	24	25	2.00
4645622--4645674	26	2.0	26	88	0	79	28	20	20	30	1.98
4647825--4647855	4	7.8	4	92	0	53	0	70	25	3	1.02
4649604--4649656	26	2.0	26	96	0	97	26	24	20	28	1.99
4648790--4652322	890	4.0	885	86	5	4789	25	24	24	25	2.00
4652263--4652315	26	2.0	26	92	0	88	28	22	20	28	1.99
4652107--4652710	185	3.3	183	82	6	675	21	26	29	22	1.99
4653526--4653578	26	2.0	26	88	0	79	26	22	22	28	1.99
4652478--4657050	893	5.1	891	85	5	5867	25	24	24	25	2.00
4654426--4654478	26	2.0	26	85	0	70	30	20	20	28	1.98
4656932--4657159	117	1.9	117	88	1	341	21	32	27	18	1.97
4657200--4657252	26	2.0	26	88	0	79	28	26	16	28	1.97
4658798--4658850	26	2.0	26	100	0	106	26	26	20	26	1.99
4660759--4660812	26	2.1	26	92	0	90	27	25	18	27	1.98
4661673--4661725	26	2.0	26	92	0	88	28	24	20	26	1.99
4664323--4664375	26	2.0	26	96	0	97	26	24	20	28	1.99
4665205--4665257	26	2.0	26	92	0	88	26	26	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4660785--4682567	882	24.0	875	76	11	15777	25	24	24	25	2.00
4668743--4668824	26	3.2	26	92	0	137	26	24	19	29	1.98
4669492--4669860	159	2.3	159	87	0	506	20	28	28	22	1.98
4669834--4669886	26	2.0	26	92	0	88	28	22	20	28	1.99
4670731--4670783	26	2.0	26	96	0	97	26	24	20	28	1.99
4671629--4671681	26	2.0	26	92	0	88	28	24	18	28	1.98
4672526--4672578	26	2.0	26	85	0	70	28	20	20	30	1.98
4672367--4672765	185	2.2	185	88	3	581	21	27	26	23	1.99
4672711--4672763	26	2.0	26	88	0	79	28	22	18	30	1.98
4673600--4673652	26	2.0	26	92	0	88	26	22	20	30	1.98
4674492--4674544	26	2.1	26	92	3	90	28	20	20	30	1.98
4675397--4675449	26	2.0	26	96	0	97	28	26	18	26	1.98
4675874--4675928	26	2.1	26	82	0	65	58	10	7	23	1.57
4676305--4676357	26	2.0	26	92	0	88	24	24	20	30	1.99
4677208--4677260	26	2.0	26	88	0	79	28	20	22	28	1.99
4672559--4682608	889	11.2	902	84	4	12192	25	24	24	25	2.00
4678101--4678153	26	2.0	26	96	0	97	28	26	18	26	1.98
4678969--4679010	20	2.1	20	90	0	66	23	26	19	30	1.98
4679858--4679910	26	2.0	26	88	0	79	30	24	18	26	1.98
4680750--4680802	26	2.0	26	96	0	97	26	24	20	28	1.99
4682543--4682593	26	2.0	26	92	0	84	29	27	15	27	1.96
4683281--4683336	26	2.2	26	90	0	85	26	21	21	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4682610--4685987	880	3.8	873	84	8	4018	25	25	23	25	2.00
4687601--4687650	25	2.0	25	92	0	82	30	26	14	30	1.94
4686026--4691602	899	6.2	900	85	5	6869	25	24	23	25	2.00
4688483--4688535	26	2.0	26	100	0	106	26	26	20	26	1.99
4689385--4689442	26	2.2	26	93	0	98	29	29	17	24	1.97
4689393--4689463	26	2.7	26	84	0	79	29	28	12	29	1.93
4689544--4689576	11	3.0	11	95	0	57	21	27	33	18	1.96
4690318--4690370	26	2.0	26	96	0	97	28	24	20	26	1.99
4691967--4692019	26	2.0	26	88	0	79	26	24	20	28	1.99
4692683--4692733	26	2.0	26	88	0	75	27	21	19	31	1.97
4692121--4693443	733	1.8	732	87	3	1989	28	23	21	26	1.99
4694282--4694332	26	2.0	26	88	0	75	27	21	19	31	1.97
4696052--4696110	27	2.2	26	85	11	84	30	16	20	32	1.95
4696795--4696847	26	2.0	26	92	0	88	28	28	18	24	1.98
4697647--4697699	26	2.0	26	96	0	97	28	26	18	26	1.98
4696447--4707173	867	12.2	876	82	6	11836	25	24	24	25	2.00
4700299--4700351	26	2.0	26	92	0	88	28	24	18	28	1.98
4701203--4701258	26	2.2	26	93	0	94	32	21	19	26	1.97
4699426--4707237	893	8.8	897	84	5	9254	25	24	24	25	2.00
4697470--4707173	877	11.0	879	83	6	10032	25	24	24	25	2.00
4705601--4705651	26	2.0	26	92	0	84	23	25	17	33	1.96
4708107--4708159	26	2.0	26	92	0	88	26	28	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4709008--4709060	26	2.0	26	82	7	63	28	26	18	26	1.98
4709895--4709947	26	2.0	26	100	0	106	26	26	20	26	1.99
4707187--4713953	865	7.6	896	85	3	8644	25	24	24	25	2.00
4711704--4711755	25	2.0	26	92	3	88	26	26	19	26	1.99
4707237--4713953	882	7.5	867	82	7	7482	25	24	24	25	2.00
4713451--4713501	26	2.0	26	100	0	102	25	27	19	27	1.99
4714123--4714175	26	2.0	26	96	0	97	28	26	18	26	1.98
4713282--4714622	672	2.0	672	86	2	1897	24	24	25	26	2.00
4715022--4715074	26	2.0	26	96	0	97	28	26	18	26	1.98
4715741--4715793	26	2.0	26	92	0	88	26	22	20	30	1.98
4716644--4716696	26	2.0	26	88	0	79	24	24	20	30	1.99
4717547--4717598	25	2.0	26	88	3	79	30	25	17	26	1.97
4715528--4717707	903	2.4	899	88	2	3230	24	26	24	24	2.00
4717805--4717857	26	2.0	26	100	0	106	26	26	20	26	1.99
4718668--4718726	26	2.3	26	91	5	95	28	27	18	25	1.98
4719545--4719597	26	2.0	26	96	0	97	26	26	18	28	1.98
4720398--4720448	26	2.0	26	100	0	102	25	27	19	27	1.99
4724820--4724872	26	2.0	26	88	0	79	30	24	18	26	1.98
4720579--4738530	904	20.2	897	84	5	21667	25	24	24	25	2.00
4726619--4726669	26	2.0	26	88	0	75	31	23	17	27	1.97
4727501--4727550	26	1.9	26	95	0	91	26	28	18	28	1.98
4728391--4728443	26	2.0	26	88	0	79	26	24	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4729262--4729313	25	2.0	26	88	3	79	26	23	21	28	1.99
4723059--4738530	900	17.5	894	83	6	18451	25	24	24	25	2.00
4734620--4734669	26	1.9	26	100	0	100	24	26	22	28	1.99
4735514--4735566	26	2.0	26	96	0	97	28	26	18	26	1.98
4736412--4736464	26	2.0	26	96	0	97	26	24	20	28	1.99
4737080--4737109	4	7.5	4	92	0	51	0	70	26	3	1.03
4737079--4737109	16	1.9	16	100	0	62	0	67	25	6	1.14
4740734--4740786	26	2.0	26	88	0	79	28	16	26	28	1.97
4740862--4741078	117	1.9	117	84	3	294	18	29	29	22	1.97
4740936--4745293	868	4.9	865	82	7	4856	25	23	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120