genome.fa.s146.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  48  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5494531--5494643	4	26.8	4	70	13	66	68	3	1	26	1.16
5494545--5494590	17	2.5	20	82	13	62	63	2	2	32	1.19
5494531--5494632	41	2.6	38	73	10	91	67	3	0	27	1.14
5494531--5494645	16	6.8	16	69	11	77	68	3	1	26	1.15
5494535--5494682	16	8.7	16	68	18	61	66	4	1	27	1.17
5494528--5494685	82	1.9	82	81	10	189	67	3	1	27	1.15
5495530--5495581	26	2.0	25	96	3	95	26	26	19	26	1.99
5496430--5496482	26	2.0	26	92	0	88	26	22	22	28	1.99
5494807--5505852	910	12.4	902	83	6	12225	25	25	24	25	2.00
5497349--5497401	26	2.0	26	85	0	70	28	20	20	30	1.98
5494807--5499532	920	5.2	902	89	2	6619	24	25	24	24	2.00
5500000--5500059	26	2.4	26	80	5	79	28	26	18	26	1.98
5500884--5500936	26	2.0	26	96	0	97	30	24	16	28	1.97
5501781--5501833	26	2.0	26	96	0	97	30	24	16	28	1.97
5499531--5505852	894	7.1	895	86	3	8141	25	24	23	25	2.00
5503550--5503600	26	2.0	26	84	0	66	29	23	15	31	1.95
5504450--5504502	26	2.0	26	96	0	97	28	26	18	26	1.98
5505360--5505412	26	2.0	26	92	0	88	28	24	18	28	1.98
5506902--5506954	26	2.0	26	88	0	79	28	22	18	30	1.98
5509829--5509906	26	3.0	25	83	10	95	28	21	20	29	1.98
5509880--5512297	875	2.8	872	87	2	3475	26	24	24	24	2.00
5511585--5513007	707	2.0	706	89	1	2174	27	23	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5514065--5514117	26	2.0	26	85	0	70	30	22	18	28	1.98
5513200--5515671	892	2.8	886	87	2	3629	26	25	23	25	2.00
5513200--5515763	898	2.9	897	88	1	3574	26	25	23	24	2.00
5515919--5516800	438	2.0	438	90	0	1372	32	23	17	26	1.96
5517908--5517959	26	2.0	26	96	0	95	28	26	17	26	1.97
5516357--5524077	901	8.6	897	86	3	10134	26	24	23	25	2.00
5519700--5519751	26	2.0	25	96	3	95	26	26	19	26	1.99
5520173--5520230	26	2.2	26	81	9	64	65	6	6	20	1.40
5520600--5520652	26	2.0	26	92	0	88	28	22	20	28	1.99
5521484--5521535	26	2.0	26	96	3	97	26	26	19	26	1.99
5522389--5522440	26	2.0	26	84	0	68	30	25	15	28	1.96
5523289--5523338	26	2.0	24	88	7	73	30	28	14	28	1.95
5524129--5524161	11	3.0	11	95	0	57	21	36	33	9	1.85
5523305--5524796	731	2.1	705	87	4	2135	26	23	23	25	2.00
5524897--5524950	26	2.1	26	92	0	90	22	24	24	29	1.99
5525793--5525845	26	2.0	26	92	0	88	28	28	16	26	1.97
5524022--5529170	891	5.7	892	88	1	7197	25	24	24	25	2.00
5526685--5526735	26	2.0	26	88	0	75	31	27	13	27	1.94
5527579--5527631	26	2.0	26	100	0	106	26	26	20	26	1.99
5528835--5529515	339	2.0	340	94	1	1206	35	21	17	25	1.95
5531495--5531551	26	2.2	26	81	6	71	33	21	12	33	1.90
5532344--5532396	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5529616--5537260	845	8.7	848	78	10	5972	25	24	24	25	2.00
5533190--5533241	26	2.0	26	96	0	95	25	26	19	28	1.98
5534066--5534118	26	2.0	26	88	0	79	26	28	18	26	1.98
5533012--5537260	890	4.8	896	82	6	4806	25	25	24	25	2.00
5535867--5535918	26	2.0	26	96	0	95	28	26	17	26	1.97
5538016--5538068	26	2.0	26	88	0	79	26	26	24	22	2.00
5538906--5538958	26	2.0	26	96	0	97	28	22	18	30	1.98
5539793--5539842	26	1.9	26	95	0	91	26	24	20	30	1.98
5540681--5540733	26	2.0	26	96	0	97	26	24	20	28	1.99
5541585--5541636	26	2.0	26	100	0	104	26	26	19	26	1.99
5537587--5542917	903	6.0	901	85	4	6864	25	24	24	25	2.00
5543023--5546546	879	4.0	871	86	4	4441	25	24	23	25	2.00
5545607--5545685	26	3.0	26	90	0	131	27	27	18	25	1.98
5546522--5546573	26	2.0	26	92	3	88	26	21	19	32	1.97
5546957--5547009	26	2.0	26	85	0	70	32	22	16	28	1.96
5546983--5551303	871	4.9	871	86	5	5607	25	25	24	24	2.00
5550476--5550531	26	2.2	26	90	0	85	32	23	16	28	1.96
5548728--5551303	897	2.9	892	85	4	3474	26	25	23	24	2.00
5552044--5552094	26	2.0	26	96	0	93	27	25	19	27	1.99
5552935--5552984	26	1.9	26	95	0	91	22	26	22	30	1.99
5553830--5553882	26	2.0	26	100	0	106	26	26	20	26	1.99
5551300--5573731	900	24.7	900	77	9	19273	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5555621--5555673	26	2.0	26	100	0	106	26	26	20	26	1.99
5558098--5558466	159	2.3	159	86	2	492	19	27	29	22	1.98
5558440--5558517	26	3.0	25	92	3	120	28	25	17	28	1.98
5560272--5560324	26	2.0	26	85	0	70	28	24	16	30	1.97
5560114--5560529	185	2.3	185	82	3	509	21	28	26	23	1.99
5562257--5562307	26	2.0	26	88	0	75	31	27	15	25	1.96
5560298--5573731	908	15.0	902	86	4	17029	25	24	24	25	2.00
5566659--5566711	26	2.0	26	92	0	88	26	22	20	30	1.98
5570073--5570097	12	2.1	12	100	0	50	0	64	28	8	1.22
5571145--5571197	26	2.0	26	89	7	81	28	20	20	30	1.98
5571844--5571890	16	2.9	16	87	0	76	0	55	25	19	1.43
5572066--5572118	26	2.0	26	92	7	90	30	26	16	26	1.97
5572964--5573014	26	2.0	26	88	0	75	27	25	19	27	1.99
5573705--5573757	26	2.0	26	92	0	88	28	24	18	28	1.98
5572942--5574475	744	2.1	741	89	2	2303	26	23	23	26	2.00
5574607--5574659	26	2.0	26	92	0	88	30	24	18	26	1.98
5576206--5576258	26	2.0	26	96	0	97	28	26	18	26	1.98
5577978--5578032	26	2.1	26	93	0	92	30	21	18	29	1.97
5579758--5579807	26	1.9	26	95	0	91	24	28	22	26	1.99
5580645--5580697	26	2.0	26	96	0	97	26	24	20	28	1.99
5575336--5581331	873	6.7	894	84	6	7384	26	24	23	25	2.00
5580853--5581822	491	2.0	490	92	0	1600	31	22	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5582036--5582087	26	2.0	26	96	3	97	26	25	21	26	1.99
5583953--5584005	26	2.0	26	96	0	97	28	20	20	30	1.98
5584849--5584901	26	2.0	26	85	0	70	30	22	16	30	1.96
5583789--5589274	903	6.1	885	83	7	6192	25	24	24	25	2.00
5591482--5591534	26	2.0	26	92	0	88	28	18	24	28	1.98
5590605--5593315	894	3.0	892	85	4	3514	25	23	24	26	2.00
5592381--5592441	25	2.4	26	94	2	106	26	22	22	27	1.99
5593999--5594051	26	2.0	26	96	0	97	28	20	26	24	1.99
5594907--5594959	26	2.0	26	96	0	97	26	18	26	28	1.98
5595800--5595852	26	2.0	26	96	0	97	26	18	26	28	1.98
5596697--5596747	26	2.0	26	92	0	84	27	17	29	25	1.98
5598502--5598554	26	2.0	26	96	0	97	26	18	26	28	1.98
5593260--5600382	900	7.9	899	85	3	9142	25	23	24	25	2.00
5599402--5599457	26	2.2	26	100	0	112	26	19	25	28	1.99
5600302--5600354	26	2.0	26	92	0	88	30	20	22	26	1.98
5599583--5601713	741	2.9	711	86	5	2878	26	22	23	27	2.00
5601736--5601790	26	2.1	26	93	0	92	29	16	25	29	1.97
5601769--5601959	95	2.0	95	94	0	337	25	23	35	16	1.94
5602705--5602757	26	2.0	26	92	0	88	26	20	26	26	1.99
5603609--5603661	26	2.0	26	100	0	106	26	20	26	26	1.99
5605406--5605455	25	2.0	26	92	4	84	30	14	24	32	1.94
5601996--5605711	891	4.1	903	85	3	4899	24	24	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5608451--5608503	26	2.0	26	100	0	106	26	20	26	26	1.99
5610086--5610138	26	2.0	26	92	0	88	26	16	26	30	1.97
5609570--5611965	903	2.7	881	85	4	3194	25	24	23	26	2.00
5611884--5611936	26	2.0	26	88	0	79	26	22	24	26	2.00
5613477--5613537	26	2.4	26	78	5	81	29	16	24	29	1.96
5614407--5614459	26	2.0	26	85	0	70	33	18	20	26	1.96
5611910--5615168	911	3.7	888	83	6	3841	26	23	23	25	2.00
5615199--5615251	26	2.0	26	88	0	79	22	18	26	32	1.97
5616067--5616119	26	2.0	26	92	0	88	30	20	22	26	1.98
5617723--5617775	26	2.0	26	92	0	88	24	18	28	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120