genome.fa.s146.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  63  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7087114--7087325	54	4.0	54	82	4	232	27	6	12	52	1.64
7087119--7087316	107	1.9	106	86	3	281	27	6	13	53	1.63
7096068--7096119	19	2.8	18	82	8	61	9	5	1	82	0.90
7106760--7106809	3	16.3	3	83	4	64	36	2	2	60	1.20
7107666--7107696	15	2.1	15	93	0	53	6	32	0	61	1.21
7115148--7115191	19	2.3	18	82	17	54	20	13	25	40	1.89
7115161--7115228	34	2.0	35	88	2	102	16	8	26	48	1.75
7115202--7115241	20	2.0	20	85	4	55	12	12	30	45	1.79
7115998--7116057	25	2.4	25	80	8	68	51	21	18	8	1.72
7117318--7117351	17	2.0	17	88	0	50	5	44	8	41	1.60
7117711--7117764	3	18.0	3	100	0	108	66	0	0	33	0.92
7117767--7117810	3	14.7	3	100	0	88	34	0	0	65	0.93
7119716--7119783	12	5.7	12	79	10	52	20	1	7	70	1.19
7120699--7120770	35	2.1	35	82	10	85	22	1	2	73	1.04
7120699--7120782	12	7.2	12	73	9	57	20	2	3	73	1.09
7120699--7120850	18	8.8	17	74	11	105	16	3	7	72	1.22
7121101--7121168	17	3.8	17	75	14	57	33	5	11	48	1.64
7121079--7121168	20	4.8	19	74	16	80	34	5	12	47	1.64
7132741--7132765	13	1.9	13	100	0	50	32	24	4	40	1.73
7132938--7133145	42	4.9	42	79	4	222	28	14	18	38	1.90
7132938--7133145	85	2.4	85	81	7	235	28	14	18	38	1.90
7135118--7135230	44	2.5	45	80	8	133	34	21	23	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7147843--7147894	24	2.2	24	85	0	68	28	25	30	15	1.96
7147850--7147895	24	1.9	24	90	0	74	28	23	30	17	1.97
7149235--7149303	23	3.1	22	87	8	104	18	5	1	73	1.10
7149241--7149303	12	5.4	12	73	7	67	19	6	1	73	1.13
7149227--7149376	17	8.8	17	71	16	73	16	4	7	72	1.25
7149281--7149376	18	5.2	18	73	12	79	13	4	11	70	1.29
7149235--7149315	23	3.6	23	86	3	103	17	4	3	74	1.15
7149350--7149383	17	1.9	18	88	5	52	20	5	2	70	1.21
7149551--7149718	55	3.1	55	86	1	230	26	7	11	54	1.64
7149702--7149759	20	2.8	20	75	12	64	25	8	12	53	1.66
7149822--7149887	22	3.0	22	69	22	57	30	3	10	56	1.49
7149826--7149935	35	2.8	39	72	22	104	31	3	10	54	1.51
7150033--7150122	20	4.8	18	72	15	67	34	5	10	50	1.59
7163213--7163305	21	4.4	21	91	1	132	33	16	18	32	1.93
7163883--7164217	167	2.0	167	89	0	508	27	21	20	30	1.98
7171161--7171239	21	3.7	21	89	3	113	31	16	20	31	1.95
7178113--7178263	43	3.5	43	80	4	153	27	15	13	43	1.84
7179356--7179428	5	14.8	5	84	8	78	5	19	0	75	0.99
7179350--7179428	30	2.5	31	81	10	88	5	18	0	75	0.97
7182573--7182612	4	10.8	4	94	5	59	27	0	0	72	0.85
7182579--7182691	25	4.6	25	66	19	69	25	1	2	69	1.11
7182639--7182687	5	9.6	5	87	12	73	20	0	0	79	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7182639--7182691	27	2.0	27	88	7	81	20	0	0	79	0.74
7182642--7182700	27	2.2	27	81	6	66	23	0	1	74	0.91
7182784--7182981	109	1.8	109	92	2	337	43	10	12	33	1.76
7182799--7182980	55	3.4	54	80	11	212	43	10	12	33	1.76
7188199--7188609	132	3.1	132	86	3	554	50	13	11	24	1.75
7190158--7190203	24	1.9	24	86	0	65	47	17	13	21	1.81
7201272--7201313	21	2.0	20	86	4	57	35	11	16	35	1.86
7203375--7203451	39	2.0	39	85	5	104	48	23	9	19	1.77
7203830--7203855	2	13.0	2	100	0	52	50	0	0	50	1.00
7207431--7207461	14	2.2	14	94	0	53	61	0	0	38	0.96
7208544--7208572	5	5.8	5	100	0	58	0	17	0	82	0.66
7209172--7209374	11	17.2	11	70	23	112	59	13	2	24	1.48
7209169--7209282	56	2.0	56	83	6	140	61	14	0	23	1.38
7209241--7209392	25	6.2	25	84	7	197	56	13	3	26	1.54
7209245--7209377	13	10.9	11	72	19	77	55	13	3	27	1.55
7209241--7209392	50	3.1	48	88	4	225	56	13	3	26	1.54
7209241--7209392	74	2.1	74	84	8	195	56	13	3	26	1.54
7211000--7211055	21	2.6	21	76	21	62	53	1	0	44	1.11
7211034--7211081	14	3.5	14	77	2	53	52	2	0	45	1.12
7211057--7211115	22	2.8	21	79	5	55	49	8	1	40	1.43
7213220--7213268	19	2.6	19	83	6	55	38	4	4	53	1.39
7213279--7213307	2	15.0	2	92	7	51	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7213548--7213694	78	1.9	78	82	2	188	44	8	6	40	1.61
7213730--7213782	27	1.9	28	85	11	74	45	5	0	49	1.26
7217733--7217761	10	3.0	10	95	5	51	62	0	0	37	0.96
7218851--7218910	10	5.8	10	80	7	75	53	3	3	40	1.34
7218853--7218908	11	5.3	11	76	8	62	50	3	3	42	1.37
7218851--7218910	21	2.9	21	82	9	79	53	3	3	40	1.34
7219151--7219203	19	2.8	18	75	8	52	58	3	1	35	1.27
7219271--7219314	19	2.4	19	88	3	63	50	15	11	22	1.76
7219278--7219314	19	1.9	19	94	0	65	43	18	13	24	1.86
7219319--7219365	20	2.3	20	85	7	60	57	4	4	34	1.38
7220014--7220068	17	3.5	17	72	23	57	36	0	7	56	1.27
7220023--7220047	12	2.1	12	100	0	50	40	0	12	48	1.40
7220008--7220063	29	1.9	29	88	0	85	42	0	7	50	1.30
7220036--7220139	9	11.3	9	70	15	61	40	0	3	54	1.25
7220036--7220070	17	2.1	17	94	0	61	37	0	2	60	1.12
7220049--7220099	20	2.6	20	81	3	59	31	1	3	62	1.24
7222296--7222341	16	2.9	16	90	3	67	32	0	0	67	0.91
7222631--7222669	17	2.4	16	83	8	51	51	0	5	43	1.24
7223763--7223795	13	2.4	14	85	10	50	72	0	0	27	0.85
7227198--7227467	70	3.9	69	75	6	224	48	7	20	23	1.74
7227270--7227735	105	4.4	104	73	4	319	47	7	23	21	1.76
7227191--7227475	35	8.1	35	73	5	155	47	8	20	23	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7227522--7227735	70	3.1	70	76	4	209	47	8	23	20	1.77
7227273--7227755	35	13.8	35	71	4	159	46	8	23	22	1.78
7227680--7227844	69	2.4	69	73	9	156	42	13	24	20	1.87
7227751--7227923	36	4.9	37	73	6	108	45	15	21	17	1.85
7228278--7228364	34	2.5	35	83	3	113	45	6	24	22	1.76
7227681--7228364	35	19.5	35	69	7	163	44	11	23	20	1.85
7228347--7228469	35	3.5	35	75	4	113	53	9	17	18	1.71
7228186--7228394	69	3.0	69	69	8	174	48	10	19	22	1.79
7228144--7228471	139	2.3	139	80	6	349	47	10	21	20	1.79
7229060--7229353	31	9.4	31	68	11	98	26	19	18	36	1.94
7229273--7229471	66	3.1	64	74	11	190	31	19	15	33	1.93
7229231--7229502	129	2.1	128	80	5	298	29	19	16	33	1.94
7229634--7229732	31	3.2	31	77	7	101	30	16	17	36	1.91
7229707--7229783	33	2.3	34	90	4	129	23	24	24	27	2.00
7232273--7232565	157	1.9	157	82	4	367	41	13	9	35	1.77
7233857--7234096	122	2.0	122	81	6	290	43	12	9	35	1.74
7238785--7238825	14	2.9	15	85	7	52	46	26	0	26	1.53
7238787--7238826	21	1.9	21	85	10	55	47	25	0	27	1.52
7238824--7238871	19	2.6	18	77	9	51	45	43	2	8	1.45
7239324--7239365	21	2.0	21	85	4	57	61	4	4	28	1.36
7245696--7245748	14	3.6	14	80	7	52	84	0	11	3	0.73
7245693--7245735	17	2.7	16	85	7	52	88	0	9	2	0.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7246263--7246365	4	27.2	4	72	16	53	73	0	21	3	1.05
7246280--7246381	5	19.4	5	67	23	50	75	0	21	1	0.96
7246318--7246381	27	2.5	25	75	22	69	76	1	21	0	0.87
7251734--7251980	123	2.0	123	85	1	334	31	19	12	36	1.89
7265040--7265082	20	2.2	20	87	8	61	37	30	13	18	1.90
7267097--7267123	13	2.1	13	100	0	54	85	7	0	7	0.75
7269361--7269405	21	2.1	21	84	8	56	51	22	0	26	1.49
7269467--7269587	64	1.9	63	84	1	161	43	6	9	40	1.62
7282799--7282860	20	2.8	21	80	14	63	70	0	3	25	1.02
7282916--7282949	11	3.1	11	86	0	50	44	0	14	41	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120