genome.fa.s146.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  101  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14158737--14158910	94	1.9	94	87	4	262	31	14	11	42	1.82
14160056--14160097	20	2.2	20	87	12	61	35	4	0	59	1.19
14162276--14162311	16	2.1	19	85	15	51	61	0	2	36	1.11
14162295--14162339	19	2.3	20	88	11	67	62	0	0	37	0.96
14162406--14162464	25	2.4	24	81	13	59	47	1	0	50	1.11
14163347--14163386	20	2.0	20	90	9	64	32	2	0	65	1.06
14171641--14171667	3	9.0	3	100	0	54	66	0	0	33	0.92
14172365--14172404	8	5.4	8	82	11	50	60	0	0	40	0.97
14189522--14189556	2	17.5	2	100	0	70	48	0	51	0	1.00
14190607--14191175	288	2.0	288	91	1	926	30	20	19	29	1.97
14196025--14196601	288	2.0	288	91	1	933	30	20	19	29	1.97
14207368--14207392	2	12.5	2	100	0	50	48	0	0	52	1.00
14211798--14211960	79	2.1	79	96	0	299	33	25	12	28	1.93
14216645--14216673	13	2.1	14	93	6	51	41	0	0	58	0.98
14217523--14217589	27	2.5	26	83	9	82	49	0	1	49	1.10
14225211--14225290	41	2.0	41	89	0	124	25	7	22	45	1.78
14226939--14226997	25	2.5	24	83	8	75	15	27	16	40	1.89
14230628--14230671	22	2.0	22	100	0	88	31	9	13	45	1.75
14233744--14233777	16	2.1	16	88	0	50	76	5	0	17	0.98
14233745--14233803	20	2.9	20	84	2	64	77	8	1	11	1.05
14235610--14235647	19	1.9	19	89	5	58	50	7	0	42	1.31
14236184--14236238	9	5.5	11	77	16	50	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14236204--14236245	10	4.2	10	79	11	50	64	0	0	35	0.94
14237144--14237220	21	3.8	21	73	16	72	62	0	2	35	1.09
14237157--14237186	9	3.3	9	90	0	51	73	0	0	26	0.84
14237158--14237207	27	2.0	26	84	11	68	70	0	0	30	0.88
14237315--14237386	27	2.7	27	95	0	126	56	0	0	43	0.99
14237332--14237379	15	3.4	15	72	16	57	54	0	0	45	0.99
14238981--14239035	19	2.8	19	77	2	56	47	1	0	50	1.11
14239005--14239131	30	4.3	30	78	8	125	39	1	1	57	1.18
14239846--14239897	21	2.5	22	93	6	90	48	0	0	51	1.00
14239914--14239954	20	2.0	20	86	13	57	65	0	0	34	0.93
14240969--14241017	25	2.1	24	85	11	66	46	4	0	48	1.20
14242936--14242976	2	20.5	2	100	0	82	48	0	0	51	1.00
14243989--14244018	2	15.0	2	100	0	60	50	0	0	50	1.00
14248553--14248582	2	15.0	2	100	0	60	50	0	50	0	1.00
14248848--14249366	129	4.0	129	95	2	930	44	13	15	26	1.84
14248848--14249366	262	2.0	258	95	1	930	44	13	15	26	1.84
14251956--14252007	23	2.2	25	86	6	72	51	1	0	46	1.12
14252154--14252219	29	2.3	28	75	17	64	46	1	4	46	1.32
14252549--14252597	18	2.9	17	79	8	55	46	0	0	53	1.00
14254926--14255156	60	3.9	58	80	11	254	37	9	5	47	1.59
14254926--14255156	118	1.9	118	84	6	306	37	9	5	47	1.59
14254925--14255156	58	3.9	57	80	10	243	37	9	5	47	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14256907--14256935	13	2.1	14	93	6	51	72	0	6	20	1.07
14257417--14257473	21	2.8	21	81	2	62	38	21	8	31	1.84
14257496--14257579	42	2.0	42	83	4	105	40	14	9	35	1.78
14259282--14259314	11	3.0	11	100	0	66	45	27	0	27	1.54
14259546--14259614	25	2.8	25	84	0	84	21	37	8	31	1.84
14259544--14259649	50	2.1	50	81	6	117	20	33	10	35	1.87
14260181--14260284	52	2.0	52	83	3	129	25	24	9	41	1.85
14260320--14260352	11	3.0	11	100	0	66	45	27	0	27	1.54
14262239--14262282	3	14.7	3	82	17	56	31	2	2	63	1.19
14262451--14262497	18	2.9	15	80	20	51	25	2	2	70	1.10
14262444--14262489	21	2.1	21	84	11	58	26	4	2	67	1.21
14262687--14262782	5	18.2	5	72	10	52	70	7	0	21	1.11
14262731--14262808	20	3.8	20	77	9	61	78	3	2	15	1.01
14263171--14263203	10	3.3	10	88	12	50	63	6	0	30	1.18
14263488--14263724	119	2.0	119	88	0	357	31	13	15	38	1.87
14263843--14263888	3	16.0	3	91	8	78	65	0	0	34	0.93
14264447--14264482	2	18.0	2	100	0	72	50	0	0	50	1.00
14269239--14269317	32	2.5	31	80	11	90	49	3	1	45	1.28
14277370--14277395	8	3.2	8	100	0	52	0	0	11	88	0.52
14289552--14289603	26	2.0	26	96	0	95	13	30	25	30	1.94
14289560--14289704	73	2.0	73	100	0	290	13	24	30	31	1.94
14293623--14293681	29	2.0	29	96	0	109	40	16	10	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14293699--14293790	46	2.0	46	100	0	184	39	23	13	23	1.90
14294141--14294213	10	7.4	10	69	9	51	60	4	2	32	1.30
14294209--14294269	22	2.7	23	80	7	81	67	11	0	21	1.22
14294708--14294747	19	2.1	19	86	9	55	15	0	5	80	0.88
14294785--14294857	37	1.9	38	86	2	103	39	0	1	58	1.06
14294794--14294879	38	2.3	37	84	9	104	33	0	3	62	1.12
14295489--14295522	17	2.0	17	100	0	68	23	35	5	35	1.79
14296988--14297017	1	30.0	1	93	0	51	96	0	3	0	0.21
14299149--14299192	21	2.0	23	82	8	56	63	4	2	29	1.26
14301044--14301102	2	30.0	2	78	10	50	42	5	3	49	1.41
14301028--14301108	37	2.2	37	100	0	162	39	8	4	46	1.56
14307921--14307963	17	2.5	17	82	10	52	69	9	20	0	1.15
14308670--14308707	2	19.5	2	89	5	60	47	0	0	52	1.00
14310167--14310219	17	2.9	19	80	11	74	50	0	3	45	1.19
14310168--14310232	23	2.8	23	75	15	62	52	0	4	43	1.22
14310567--14310653	42	2.1	42	89	4	131	32	21	9	36	1.85
14312800--14312846	24	2.0	24	86	0	67	40	10	2	46	1.50
14314888--14314925	16	2.4	16	86	4	51	39	2	5	52	1.38
14315024--14315049	13	2.0	13	100	0	52	38	0	0	61	0.96
14315611--14315646	3	12.0	3	93	0	63	0	33	2	63	1.08
14326314--14326388	36	2.1	36	100	0	150	18	13	32	36	1.90
14330529--14330613	42	2.0	42	100	0	170	25	7	11	55	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14336824--14336882	26	2.2	27	78	6	66	37	0	1	61	1.07
14339575--14339607	5	6.6	5	100	0	66	18	0	0	81	0.68
14339565--14339627	10	6.7	9	80	7	56	12	4	0	82	0.82
14339756--14339812	20	2.8	20	87	7	73	29	8	12	49	1.70
14345794--14345859	22	2.9	23	80	13	75	37	4	9	48	1.55
14345811--14345858	22	2.2	22	92	3	80	37	4	8	50	1.52
14345756--14345922	90	1.9	90	83	7	223	36	8	11	43	1.72
14346929--14346966	17	2.2	18	85	4	51	21	0	7	71	1.11
14347969--14347993	13	1.9	13	100	0	50	16	0	4	80	0.87
14347962--14348008	18	2.6	18	83	12	60	17	2	4	76	1.04
14348166--14348222	17	3.2	18	82	7	71	29	5	12	52	1.60
14353849--14353877	2	14.5	2	100	0	58	48	0	0	51	1.00
14356168--14356206	3	13.0	3	100	0	78	66	0	0	33	0.92
14356292--14356339	3	16.3	3	83	16	57	70	2	0	27	0.98
14370592--14370633	21	2.0	21	95	0	75	52	9	21	16	1.72
14374223--14374282	31	1.9	31	90	6	95	46	1	1	50	1.21
14380565--14380704	70	2.0	70	85	0	190	34	12	20	32	1.91
14384184--14384224	14	2.9	15	82	10	50	41	0	0	58	0.98
14384815--14384889	36	2.1	36	87	4	109	57	0	2	40	1.13
14384851--14384905	25	2.2	25	80	0	65	61	0	3	34	1.13
14384892--14384946	10	5.3	11	76	12	53	63	5	1	29	1.27
14384892--14384948	20	2.8	20	84	7	71	61	5	1	31	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14385028--14385064	19	2.0	18	89	5	56	67	5	0	27	1.12
14386072--14386099	7	4.0	7	100	0	56	28	28	14	28	1.95
14390778--14390806	14	2.1	14	93	6	51	31	0	6	62	1.22
14390801--14390849	18	2.5	20	73	26	52	51	2	0	46	1.12
14392416--14392461	15	3.3	14	76	17	51	39	0	2	58	1.10
14392409--14392461	27	2.0	27	92	3	90	41	0	1	56	1.10
14392530--14392567	2	19.0	2	100	0	76	50	0	50	0	1.00
14393028--14393072	19	2.2	21	84	7	58	37	0	13	48	1.42
14393019--14393072	20	2.7	20	82	5	65	35	1	16	46	1.58
14393229--14393271	17	2.4	18	84	7	52	32	2	4	60	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120