genome.fa.s146.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  58  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6696372--6696405	11	3.2	11	91	8	61	14	0	0	85	0.60
6696434--6696645	117	1.8	116	88	3	327	41	8	14	35	1.77
6696414--6696646	58	3.9	58	84	5	297	42	9	13	34	1.75
6697191--6697215	13	1.9	13	100	0	50	32	8	16	44	1.76
6700114--6702563	181	13.7	180	77	7	1905	41	9	8	39	1.70
6700105--6702563	361	6.9	360	77	6	1924	41	9	8	39	1.70
6700075--6704237	542	7.8	536	73	10	2262	41	9	8	40	1.68
6701991--6702331	171	2.0	171	81	2	407	42	10	7	40	1.66
6702777--6702817	13	3.2	13	86	6	57	48	0	2	48	1.14
6702757--6702819	21	3.1	20	84	4	65	49	0	3	47	1.17
6702786--6702829	19	2.3	20	84	11	65	47	2	0	50	1.13
6702786--6702850	10	6.5	10	72	18	55	44	1	1	52	1.19
6702904--6704248	180	7.5	179	75	8	914	41	9	8	40	1.68
6702903--6704361	357	4.1	355	74	9	1180	41	10	8	40	1.69
6704575--6704622	20	2.5	19	81	18	55	35	4	4	56	1.38
6704786--6704860	32	2.3	31	80	13	80	53	2	2	41	1.29
6704912--6704942	16	1.9	16	100	0	62	29	6	6	58	1.48
6706218--6706454	120	2.0	120	87	3	343	44	8	12	35	1.72
6707360--6707399	12	3.5	11	83	10	53	50	0	2	47	1.14
6707372--6707411	18	2.2	18	86	13	55	52	2	0	45	1.14
6707360--6707406	24	2.0	24	83	8	60	53	2	2	42	1.25
6708325--6708442	13	9.3	13	65	18	52	54	0	1	44	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6708349--6708415	19	3.4	19	74	22	57	52	0	1	46	1.09
6708332--6708449	25	5.1	24	71	13	79	54	0	1	44	1.10
6708327--6708401	16	4.6	16	73	16	57	50	0	2	46	1.15
6708382--6708463	41	2.0	42	83	6	107	57	1	0	41	1.06
6708867--6709458	182	3.3	179	78	8	614	42	10	7	39	1.68
6709542--6710745	181	6.7	180	76	6	1026	41	10	7	40	1.67
6711022--6711069	25	1.9	25	87	8	71	41	4	0	54	1.20
6711103--6711734	175	3.6	178	75	10	515	40	7	9	42	1.64
6711337--6711819	176	2.7	180	77	8	436	41	7	8	42	1.64
6711896--6712565	181	3.7	179	76	5	555	42	8	8	40	1.64
6715377--6715426	22	2.3	21	82	3	64	48	2	0	50	1.12
6715555--6715604	23	2.2	23	82	13	59	48	0	0	52	1.00
6715563--6715608	22	2.0	22	88	12	67	45	0	0	54	0.99
6715555--6715610	28	2.1	26	83	12	69	46	0	0	53	1.00
6715555--6715604	22	2.0	25	82	17	61	48	0	0	52	1.00
6715804--6715843	18	2.2	18	86	8	55	50	0	0	50	1.00
6716175--6716209	14	2.5	14	85	0	52	51	2	0	45	1.16
6716385--6716456	17	4.3	17	75	19	62	52	0	2	44	1.15
6717587--6717625	20	2.0	20	100	0	78	51	5	0	43	1.24
6717824--6717864	22	2.0	22	85	9	59	41	0	0	58	0.98
6717839--6717891	17	3.1	17	76	7	54	43	0	1	54	1.11
6717834--6717889	22	2.6	23	86	8	73	42	0	1	55	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6718639--6718974	181	1.9	180	81	3	406	43	9	7	39	1.67
6718939--6719003	31	2.1	31	83	11	80	44	1	3	50	1.26
6718973--6719002	15	2.1	14	93	6	51	43	0	0	56	0.99
6719516--6720057	279	1.9	279	92	0	895	45	11	14	29	1.79
6721161--6721217	18	3.2	18	73	12	55	45	7	8	38	1.62
6721154--6721712	179	3.1	179	78	8	571	41	8	8	41	1.65
6722102--6722154	17	2.8	20	77	16	67	50	0	1	47	1.12
6722101--6722170	20	3.7	20	75	9	65	50	0	2	47	1.16
6722393--6722443	21	2.4	21	86	3	66	45	3	5	45	1.46
6722438--6722494	13	3.4	17	72	27	50	49	0	0	50	1.00
6722499--6722543	17	2.6	18	82	10	58	46	0	0	53	1.00
6722590--6722639	13	3.9	14	75	21	56	50	0	0	50	1.00
6722592--6722675	28	3.0	28	69	22	68	48	0	2	48	1.14
6722617--6722682	29	2.2	30	86	5	89	46	0	3	50	1.16
6723236--6723604	176	2.1	178	89	2	555	32	18	21	27	1.96
6732666--6732700	18	1.9	18	88	0	52	42	5	2	48	1.41
6733007--6733050	19	2.2	20	84	11	56	56	2	4	36	1.32
6732994--6733055	23	2.5	24	75	17	65	53	1	3	41	1.27
6733042--6733083	21	2.0	20	86	13	57	42	0	0	57	0.99
6733477--6733747	143	1.9	143	80	4	323	38	8	9	43	1.69
6736437--6736563	11	11.5	11	68	14	55	41	3	0	53	1.25
6736881--6736917	19	2.1	17	90	10	56	45	0	0	54	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6736884--6736939	19	2.8	20	76	17	55	50	0	1	48	1.11
6737300--6737364	20	3.6	17	76	17	60	47	0	1	50	1.10
6737765--6737810	24	1.9	24	82	8	58	45	2	4	47	1.34
6737796--6737829	17	2.0	17	100	0	68	47	0	0	52	1.00
6737946--6737983	20	1.9	20	88	0	58	50	7	0	42	1.31
6738045--6738102	10	5.0	12	75	19	52	48	1	1	48	1.22
6738102--6738172	19	3.8	17	75	15	61	49	0	4	46	1.21
6738215--6738257	15	2.9	15	80	16	54	55	0	0	44	0.99
6738345--6738383	19	2.1	18	85	4	51	53	2	7	35	1.43
6738373--6738446	23	3.3	23	76	17	68	39	6	1	52	1.36
6739383--6739519	52	2.6	52	85	6	170	43	8	16	32	1.78
6740011--6740481	46	10.4	46	87	4	590	39	10	14	35	1.80
6740518--6740653	44	3.0	49	74	20	150	36	13	16	33	1.88
6742073--6742104	17	1.9	16	93	6	55	78	0	0	21	0.76
6742072--6742103	12	2.6	13	90	9	50	78	0	0	21	0.76
6742093--6742314	120	1.9	118	89	5	349	50	9	15	25	1.74
6743903--6743941	19	2.1	18	90	4	60	43	0	0	56	0.99
6743906--6743959	19	2.7	19	77	13	56	46	0	1	51	1.11
6745023--6745080	10	5.0	12	75	19	52	48	1	1	48	1.22
6745193--6745235	15	2.9	15	80	16	54	55	0	0	44	0.99
6745323--6745361	19	2.1	18	90	4	60	53	5	5	35	1.45
6745598--6745639	18	2.3	19	83	8	59	40	0	2	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6746347--6746561	119	1.8	118	86	6	317	49	10	14	25	1.75
6747032--6747174	46	3.1	46	90	6	218	41	11	12	34	1.79
6747158--6747375	46	4.8	45	82	5	226	39	11	13	35	1.81
6747038--6747461	92	4.7	89	79	11	307	38	11	13	36	1.81
6747040--6747287	113	2.2	113	86	3	338	41	12	12	34	1.79
6747032--6747327	159	1.9	160	87	2	443	41	12	12	33	1.81
6747040--6747485	21	20.0	22	76	10	365	38	11	14	36	1.82
6747042--6747485	67	6.6	64	76	11	301	38	11	14	36	1.81
6747791--6747880	43	2.1	43	86	8	123	21	15	22	41	1.90
6748817--6748865	16	2.9	16	84	6	53	16	2	4	77	1.01
6749096--6749125	7	4.3	7	95	0	51	83	0	0	16	0.65
6749110--6749327	122	1.8	119	88	6	332	51	9	15	23	1.71
6749237--6749335	51	1.9	51	84	8	130	49	9	16	25	1.74
6750122--6750183	25	2.5	25	75	0	61	48	1	0	50	1.10
6750208--6750275	36	1.9	34	82	11	84	45	1	4	48	1.31
6750470--6750511	15	2.9	14	77	22	50	52	0	2	45	1.13
6750522--6750561	21	1.9	21	85	10	55	52	2	2	42	1.28
6750585--6750637	15	2.9	19	71	26	51	50	1	0	47	1.12
6750603--6750636	15	2.2	16	94	5	61	52	0	0	47	1.00
6750654--6750684	15	2.1	15	93	0	53	41	0	0	58	0.98
6750655--6750725	19	3.5	19	69	14	52	42	2	1	53	1.24
6752003--6752057	28	2.0	28	85	7	76	45	1	1	50	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6752402--6752451	22	2.3	22	82	6	57	42	0	6	52	1.26
6752550--6752596	20	2.2	20	85	11	58	40	2	0	57	1.11
6752606--6752632	13	2.1	13	100	0	54	55	0	0	44	0.99
6752563--6752688	31	4.1	30	72	17	80	49	0	1	48	1.16
6752754--6752804	24	2.1	25	85	3	68	54	0	1	43	1.11
6752984--6753018	16	2.1	18	89	10	56	45	0	5	48	1.26
6753420--6753444	13	1.9	13	100	0	50	48	4	0	48	1.20
6753457--6753490	15	2.2	16	90	10	54	50	0	5	44	1.26
6753580--6753636	13	4.5	13	80	10	57	54	0	0	45	0.99
6754124--6754188	14	4.5	15	77	12	64	50	0	0	49	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120