genome.fa.s146.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  62  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6879455--6880659	358	3.4	358	75	7	847	39	7	10	42	1.67
6880789--6889515	181	47.8	180	71	11	3547	39	8	9	41	1.69
6880789--6889515	542	16.3	540	76	8	6255	39	8	9	41	1.69
6880789--6889515	361	24.4	361	75	8	5998	39	8	9	41	1.69
6887260--6887295	16	2.1	17	90	10	56	44	8	5	41	1.58
6889542--6890099	293	1.9	288	81	5	678	38	7	9	43	1.66
6889884--6890527	181	3.6	181	79	4	576	40	7	10	41	1.68
6890404--6890671	144	1.9	145	85	3	380	40	5	9	44	1.61
6890512--6892039	180	8.5	181	75	7	1159	40	7	9	42	1.66
6890512--6891941	542	2.6	536	81	6	1581	41	7	9	41	1.66
6891982--6892092	53	2.1	53	84	3	143	31	4	7	56	1.46
6891801--6892273	232	2.0	234	80	4	528	36	8	9	45	1.66
6892037--6892714	181	3.8	180	79	7	668	38	8	10	42	1.70
6892568--6892868	154	2.0	154	86	5	421	40	7	8	43	1.63
6892721--6894457	181	9.6	182	75	9	1151	40	8	9	41	1.68
6892211--6893231	517	2.0	508	82	7	1231	39	8	10	42	1.68
6892721--6893639	363	2.5	362	90	1	1412	39	8	9	42	1.69
6893470--6893511	19	2.5	16	82	17	50	38	0	2	59	1.10
6893781--6894454	358	1.9	357	80	5	808	41	7	10	41	1.66
6894398--6894535	67	2.1	67	88	2	206	43	8	13	34	1.74
6894465--6894875	181	2.3	181	81	4	463	39	9	9	41	1.71
6895028--6897653	181	14.5	182	78	5	2048	41	9	7	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6897675--6903235	180	31.0	181	76	6	4145	42	9	7	40	1.67
6897681--6914799	360	47.7	359	70	13	2121	41	10	8	40	1.68
6899477--6900465	174	5.6	174	74	10	424	41	9	8	40	1.67
6897681--6906006	180	46.7	175	72	12	3679	41	9	8	40	1.68
6903071--6903120	17	2.8	19	69	25	54	38	10	4	48	1.56
6903260--6906055	181	15.7	176	72	10	1260	41	9	8	39	1.70
6906063--6914799	181	48.2	181	71	11	3977	41	10	8	40	1.69
6908415--6909364	182	5.3	176	75	8	649	40	10	8	40	1.71
6909294--6909431	67	2.1	67	87	2	197	37	12	7	42	1.72
6909111--6909550	239	1.8	243	80	12	537	40	10	7	41	1.67
6909361--6915475	181	33.8	179	74	8	3739	41	10	8	40	1.68
6909854--6909886	18	1.9	17	88	11	50	42	6	3	48	1.43
6910011--6910062	24	2.2	24	100	0	104	44	15	0	40	1.46
6910059--6915475	361	15.0	359	74	8	3592	41	10	8	40	1.69
6914788--6914827	19	2.1	19	85	4	53	40	2	10	47	1.50
6915217--6915271	23	2.4	22	79	8	65	56	1	1	40	1.21
6914800--6915450	182	3.6	178	76	6	539	42	9	7	39	1.67
6914847--6915475	180	3.5	178	77	7	423	42	10	7	38	1.69
6915360--6915598	126	1.9	126	80	3	275	46	9	8	35	1.68
6915722--6915760	21	1.9	20	89	5	60	48	0	10	41	1.37
6915742--6921799	181	33.8	180	76	7	4077	40	8	9	41	1.68
6915742--6921786	719	8.4	713	74	9	3828	40	8	9	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6915786--6921784	361	16.7	350	72	11	1121	40	8	9	41	1.68
6922123--6922183	28	2.2	28	93	0	104	13	45	22	18	1.83
6922151--6922859	370	1.9	368	85	2	956	19	30	23	27	1.98
6927361--6927746	180	2.1	180	80	3	436	39	8	8	42	1.67
6927909--6929260	181	7.6	178	73	10	840	38	8	10	42	1.69
6927909--6929260	182	7.6	179	73	11	764	38	8	10	42	1.69
6928401--6929210	348	2.3	352	76	11	756	38	7	10	43	1.68
6929257--6931087	181	10.1	181	76	7	1456	39	7	10	42	1.68
6929493--6931001	722	2.1	719	81	4	1734	39	8	9	43	1.67
6931074--6931105	15	2.1	16	94	5	57	46	0	9	43	1.35
6931032--6931148	61	1.9	61	87	0	171	45	4	14	35	1.65
6931096--6932119	183	5.7	181	75	7	852	38	8	10	42	1.70
6931663--6932571	449	2.0	457	81	7	1070	38	8	9	43	1.68
6932122--6934747	181	14.7	181	71	11	1157	40	8	9	41	1.68
6933019--6937154	361	11.6	360	72	9	1942	40	8	9	41	1.68
6933019--6934800	542	3.3	535	77	5	1726	40	8	9	40	1.68
6934954--6937133	181	12.2	181	75	10	1349	40	8	9	41	1.67
6934930--6937133	358	6.1	357	75	10	1462	40	8	9	41	1.67
6937189--6939894	181	15.2	180	74	10	1752	40	8	9	42	1.67
6937192--6946025	361	24.6	356	69	14	2232	40	8	9	41	1.68
6938451--6939733	530	2.4	529	81	6	1412	39	7	9	42	1.67
6939752--6940017	140	1.9	144	85	6	382	37	8	10	43	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6939880--6940882	181	5.6	181	79	7	965	40	7	8	42	1.66
6940888--6945227	180	24.3	178	70	12	1169	40	8	9	41	1.68
6942315--6945334	181	16.8	180	73	9	1649	40	8	9	41	1.68
6942858--6942894	17	2.1	18	90	5	58	35	0	10	54	1.36
6940904--6946025	358	14.2	360	74	9	3519	40	8	9	41	1.68
6943556--6943588	15	2.3	15	89	5	50	24	0	3	72	0.98
6944015--6944049	13	2.7	13	90	0	52	51	11	8	28	1.67
6944021--6944062	13	3.2	13	86	10	50	50	9	7	33	1.62
6944767--6945222	174	2.6	173	78	7	404	39	7	10	42	1.69
6945353--6945414	24	2.6	24	89	2	90	35	6	0	58	1.24
6945391--6945768	181	2.1	180	85	4	494	39	9	7	43	1.66
6945391--6946025	181	3.5	182	77	8	480	39	9	9	41	1.70
6946659--6947125	181	2.6	181	79	4	494	41	10	8	38	1.71
6946598--6947165	181	3.1	181	76	5	488	40	10	8	40	1.70
6947093--6947240	73	2.0	73	93	2	253	45	12	7	34	1.71
6947166--6949656	181	14.0	176	73	9	1414	41	10	8	39	1.69
6949537--6949821	152	1.9	152	85	2	394	42	9	7	40	1.65
6949358--6950000	333	1.9	331	83	4	821	41	9	8	40	1.67
6950041--6950076	16	2.2	17	90	5	56	41	11	2	44	1.54
6949673--6950329	181	3.6	179	79	8	666	40	9	7	41	1.67
6950397--6950736	173	1.9	175	84	7	449	43	9	6	40	1.63
6950500--6950932	176	2.5	170	80	7	424	42	9	7	40	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6951006--6951692	349	2.0	351	80	5	800	42	10	8	38	1.69
6951193--6951512	169	1.9	170	84	4	432	43	11	6	38	1.67
6951355--6952310	178	5.3	179	76	6	526	40	9	8	40	1.69
6951359--6952551	541	2.2	540	77	7	1153	40	10	8	40	1.69
6950394--6956357	181	33.7	176	70	12	1557	41	9	7	40	1.67
6951355--6952551	178	6.6	178	73	8	482	40	10	8	40	1.69
6952739--6961840	181	50.4	179	70	12	3234	41	9	7	40	1.67
6954395--6954429	18	1.9	18	88	0	52	28	5	11	54	1.59
6952746--6973396	357	57.7	360	71	11	8096	41	9	8	40	1.68
6954368--6954685	169	1.9	168	82	1	404	42	10	5	41	1.62
6957621--6973407	534	29.6	534	72	10	6371	41	10	8	39	1.69
6959288--6959320	16	2.0	17	88	5	50	42	12	0	45	1.41
6960707--6976257	181	87.7	177	70	12	5213	41	9	8	40	1.69
6962098--6964515	182	13.4	181	73	7	1361	42	9	8	39	1.67
6964535--6976237	534	22.0	534	72	11	4536	41	10	8	40	1.70
6973274--6973557	150	1.9	151	85	5	396	41	10	10	38	1.74
6973448--6976288	180	16.0	179	74	10	1709	40	9	8	40	1.68
6973417--6976289	361	8.1	359	75	8	2027	41	9	8	40	1.68
6975398--6975722	157	2.1	157	86	1	454	39	9	7	43	1.66
6993625--6993675	6	8.2	6	82	8	66	33	31	15	19	1.93
6993624--6993674	13	4.0	13	84	5	77	35	29	15	19	1.93
6993626--6993674	25	2.0	25	95	0	89	34	28	16	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7005565--7005660	47	2.0	47	86	4	131	14	18	30	36	1.91
7085824--7085890	12	5.6	12	76	13	50	22	0	7	70	1.12
7085842--7085871	15	1.9	16	93	6	53	23	0	0	76	0.78
7085828--7085890	24	2.7	22	76	13	72	22	0	6	71	1.08
7086847--7086905	23	2.7	22	81	5	66	16	3	1	77	0.98
7086869--7086905	17	2.2	16	90	4	56	16	2	0	81	0.81
7086857--7086922	28	2.4	28	84	0	87	15	4	6	74	1.18
7086880--7086978	17	5.6	17	71	15	58	12	3	13	71	1.25
7086914--7086961	23	2.2	22	88	7	71	8	2	18	70	1.22
7087169--7087211	22	2.0	22	95	0	77	27	4	11	55	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120