genome.fa.s146.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  7  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
700775--700827	26	2.0	26	96	0	97	28	18	26	26	1.98
699898--702763	895	3.2	895	85	2	3646	25	24	25	25	2.00
701671--701723	26	2.0	26	100	0	106	30	20	22	26	1.98
702552--702604	26	2.0	26	88	0	79	26	18	24	30	1.98
702737--702789	26	2.0	26	85	0	70	28	20	22	28	1.99
702548--702948	185	2.2	185	83	0	489	23	27	26	21	1.99
703614--703666	26	2.0	26	100	0	106	26	16	26	30	1.97
705409--705461	26	2.0	26	89	7	81	28	16	26	28	1.97
702716--712746	891	11.2	890	85	4	12481	25	24	24	25	2.00
706300--706352	26	2.0	26	92	0	88	28	18	24	28	1.98
707204--707256	26	2.0	26	92	0	88	28	18	24	28	1.98
710784--710836	26	2.0	26	92	7	90	28	16	26	28	1.97
711689--711748	26	2.3	26	97	0	111	26	18	25	30	1.98
711699--711768	26	2.7	26	88	2	95	28	20	21	30	1.98
713232--713283	26	2.0	26	88	7	79	25	15	28	30	1.96
715836--715888	27	1.9	28	92	3	90	30	20	22	26	1.98
714109--721756	895	8.6	878	83	7	8826	25	23	25	25	2.00
718503--718555	26	2.0	26	88	0	79	30	18	24	26	1.98
719402--719454	26	2.0	26	88	0	79	30	18	22	28	1.98
720297--720347	26	2.0	26	92	7	86	33	15	23	27	1.95
721920--721972	26	2.0	26	89	7	81	26	18	26	28	1.98
723556--723608	26	2.0	26	88	0	79	30	18	24	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
724455--724507	26	2.0	26	100	0	106	26	20	26	26	1.99
721946--728950	898	7.8	892	85	4	8907	25	24	24	25	2.00
725355--725405	26	2.0	26	96	0	93	29	21	21	27	1.99
727145--727197	26	2.0	26	92	0	88	28	18	24	28	1.98
728903--729297	159	2.5	159	85	1	506	21	28	29	20	1.98
731338--731390	26	2.0	26	92	0	88	30	18	24	26	1.98
733859--733911	26	2.0	26	92	0	88	26	20	24	28	1.99
734754--734806	26	2.0	26	92	0	88	26	20	26	26	1.99
732023--740527	893	9.3	896	73	12	5975	24	24	25	25	2.00
732023--735943	902	4.4	898	84	5	4940	24	24	25	25	2.00
735746--736064	171	1.9	171	85	0	449	20	28	32	18	1.96
736721--736771	26	2.0	26	92	0	84	27	21	23	27	1.99
737621--737672	26	2.0	26	88	0	77	26	17	28	26	1.97
735916--740527	893	5.1	896	86	3	6264	24	24	25	25	2.00
738519--738571	26	2.0	26	96	0	97	26	18	26	28	1.98
739429--739481	26	2.0	26	100	0	106	30	20	22	26	1.98
740323--740375	26	2.0	26	96	0	97	28	20	24	26	1.99
741059--741111	26	2.0	26	96	0	97	26	18	26	28	1.98
739782--741229	736	2.0	738	88	1	2197	25	24	23	25	2.00
741822--741874	26	2.0	26	92	0	88	26	20	26	26	1.99
743258--743308	26	2.0	26	92	0	84	29	17	25	27	1.98
744159--744995	427	1.9	431	84	3	1128	23	24	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
744583--748377	901	4.3	896	85	4	4832	24	23	25	25	2.00
747260--747312	26	2.0	26	92	0	88	30	20	24	24	1.99
748842--748894	26	2.0	26	82	7	63	28	20	22	28	1.99
749749--749801	26	2.1	25	92	3	88	30	20	24	24	1.99
748383--752284	911	4.3	899	84	4	4927	25	23	24	26	2.00
751550--751602	26	2.0	26	89	7	81	26	26	22	24	2.00
752308--752341	4	8.5	4	86	0	50	5	26	67	0	1.13
752908--754421	755	2.0	757	87	2	2173	26	22	25	26	2.00
754601--754653	26	2.0	26	92	0	88	28	18	24	28	1.98
753740--767453	890	15.2	891	74	11	9260	25	24	24	25	2.00
758165--758215	26	2.0	26	92	0	84	29	19	19	31	1.97
755502--767472	901	13.2	896	74	11	7311	25	24	24	25	2.00
759406--759458	26	2.0	26	85	0	70	26	13	28	32	1.93
760088--760140	26	2.0	26	92	7	90	26	16	26	30	1.97
760058--760471	172	2.3	173	85	5	533	21	28	28	21	1.99
761165--761217	26	2.0	26	92	0	88	28	18	24	28	1.98
762803--762855	26	2.0	26	96	0	97	24	20	28	26	1.99
761266--767472	893	7.0	886	83	5	7233	25	24	24	25	2.00
764601--764653	26	2.0	26	96	0	97	28	20	24	26	1.99
765471--765523	26	2.0	26	92	0	88	30	16	24	28	1.97
767232--767284	26	2.0	26	88	0	79	26	18	24	30	1.98
767337--767624	150	1.9	150	85	2	400	21	29	29	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
769152--769204	26	2.0	26	88	0	79	26	18	24	30	1.98
769257--769551	150	2.0	150	84	2	387	20	28	31	19	1.97
770191--770243	26	2.0	26	96	0	97	24	20	28	26	1.99
771981--772033	26	2.0	26	81	0	61	24	20	28	26	1.99
772416--780204	860	8.8	859	84	6	8511	25	24	24	25	2.00
775345--775397	26	2.0	26	92	0	88	26	20	22	30	1.98
776253--776305	26	2.0	26	96	0	97	28	20	24	26	1.99
778012--778067	26	2.2	26	93	0	94	26	19	23	30	1.98
779792--779844	26	2.0	26	96	0	97	24	20	28	26	1.99
780540--780592	26	2.0	26	92	0	88	28	18	24	28	1.98
781435--781487	26	2.0	26	96	0	97	28	20	24	26	1.99
782331--782409	26	3.0	26	96	0	140	27	18	25	27	1.98
783257--783309	26	2.0	26	96	0	97	26	20	24	28	1.99
782383--785746	873	3.8	873	84	6	4226	25	23	25	25	2.00
785761--785813	26	2.0	26	88	0	79	30	18	22	28	1.98
788469--788507	20	2.0	20	89	0	60	33	20	23	23	1.97
788693--788723	12	2.6	12	94	0	53	12	25	61	0	1.32
789370--789422	26	2.0	26	96	0	97	26	18	26	28	1.98
790164--790192	11	2.6	11	100	0	58	10	31	41	17	1.83
790273--790325	26	2.0	26	89	7	81	28	22	24	24	2.00
791176--791228	26	2.0	26	96	0	97	28	20	26	24	1.99
792082--792134	26	2.0	26	96	0	97	24	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
794509--794561	26	2.0	26	92	0	88	28	18	24	28	1.98
794981--795059	26	3.0	25	92	3	122	27	18	24	29	1.98
795903--795955	26	2.0	26	92	0	88	28	16	22	32	1.96
796808--796860	26	2.1	26	89	3	81	30	20	22	26	1.98
795007--800002	901	5.6	897	84	4	6213	25	23	24	26	2.00
797706--797758	26	2.0	26	92	0	88	28	22	22	26	1.99
799480--799531	26	2.0	25	85	10	70	28	19	21	30	1.97
804347--804396	26	1.9	26	100	0	100	24	28	20	28	1.99
805994--806046	26	2.0	26	92	0	88	26	30	18	24	1.98
806894--806946	26	2.0	26	92	7	90	26	22	20	30	1.98
808633--808685	26	2.0	26	96	0	97	26	24	20	28	1.99
809542--809593	26	2.0	26	92	0	86	30	25	17	26	1.97
808659--814271	888	6.4	875	81	10	5584	25	24	24	26	2.00
813932--813984	26	2.0	26	100	0	106	26	26	20	26	1.99
814480--814532	26	2.0	26	96	0	97	26	24	20	28	1.99
817147--817198	26	2.0	26	96	0	95	26	25	19	28	1.98
816268--821145	905	5.4	903	84	4	6201	25	25	24	24	2.00
818051--818103	26	2.0	26	96	0	97	28	26	18	26	1.98
814284--821145	886	7.7	891	83	5	7950	25	25	24	24	2.00
819822--819900	26	3.0	26	96	0	149	26	27	20	25	1.99
820750--820802	26	2.0	26	92	0	88	28	24	20	26	1.99
821379--821426	25	1.9	25	100	0	96	25	29	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
821142--823322	889	2.4	876	84	6	2796	24	25	24	24	2.00
823163--823215	26	2.0	26	96	0	97	28	26	18	26	1.98
823790--824084	58	5.0	59	85	4	398	35	11	7	45	1.68
823792--824081	118	2.5	118	89	2	422	35	12	6	45	1.67
824092--824149	14	4.2	14	76	8	57	77	1	6	13	1.05
824099--824149	17	2.9	17	76	21	52	78	1	5	13	1.02
824136--824175	17	2.4	16	84	8	53	72	0	5	22	1.04
824575--824619	20	2.3	19	81	11	54	15	20	22	42	1.89
824900--825011	58	1.9	58	96	0	206	19	20	17	41	1.90
825286--825333	3	14.7	3	83	12	51	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120