genome.fa.s146.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  46  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5247628--5247684	26	2.2	26	81	6	62	59	12	7	21	1.56
5248059--5248111	26	2.0	26	96	0	97	26	28	20	24	1.99
5248962--5249014	26	2.0	26	92	0	88	30	26	18	24	1.98
5249870--5249922	26	2.0	26	96	0	97	26	28	20	24	1.99
5251657--5251709	27	2.0	27	92	3	90	30	24	15	30	1.95
5252558--5252610	26	2.0	26	92	0	88	30	24	20	24	1.99
5254318--5254370	26	2.0	26	92	7	90	26	22	20	30	1.98
5255221--5255273	26	2.0	26	92	0	88	30	26	18	24	1.98
5256129--5256181	26	2.0	26	92	0	88	26	26	20	26	1.99
5258616--5258668	26	2.0	26	96	0	97	26	20	20	32	1.98
5260099--5260151	26	2.0	26	92	0	88	26	22	20	30	1.98
5260844--5260896	26	2.0	26	92	0	88	26	24	22	26	2.00
5263322--5263374	26	2.0	26	96	0	97	24	28	20	26	1.99
5262458--5266067	912	4.0	905	87	2	4950	25	25	24	25	2.00
5265136--5265187	26	2.0	26	88	0	77	32	25	13	28	1.93
5266180--5293371	902	30.1	891	75	10	18637	25	24	23	25	2.00
5268563--5268614	26	2.0	25	92	3	86	25	25	21	28	1.99
5271216--5271267	26	2.0	26	96	0	95	28	26	17	26	1.97
5276572--5276622	26	2.0	26	96	0	93	27	27	17	27	1.98
5277466--5277518	26	2.0	26	88	0	79	28	22	18	30	1.98
5274814--5279370	897	5.1	898	85	3	5814	25	24	24	25	2.00
5279930--5279981	26	2.0	26	96	0	95	26	25	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5280491--5280739	131	1.9	132	93	0	428	32	23	18	25	1.97
5280948--5281026	26	3.0	26	83	0	113	29	25	16	29	1.97
5281877--5281926	26	1.9	26	95	0	91	26	26	18	30	1.98
5280623--5282863	893	2.5	892	85	4	2933	25	25	24	25	2.00
5283057--5283109	26	2.0	26	88	0	79	30	24	16	28	1.97
5282606--5283145	282	1.9	282	86	0	758	21	27	28	22	1.99
5283963--5284066	26	4.0	26	91	3	158	27	24	19	28	1.98
5284894--5284945	25	2.0	26	96	3	97	26	26	21	25	1.99
5284014--5293371	901	10.4	901	86	1	12316	25	24	23	25	2.00
5286695--5286747	26	2.0	26	96	0	97	28	26	18	26	1.98
5287590--5287643	26	2.1	26	96	0	99	25	25	20	27	1.99
5288487--5288539	26	2.0	26	92	7	90	24	24	20	30	1.99
5289377--5289429	26	2.0	26	92	0	88	26	24	18	30	1.98
5290276--5290328	26	2.0	26	85	0	70	28	24	15	32	1.95
5291183--5291232	26	1.9	26	95	0	91	24	26	20	30	1.98
5292082--5292134	26	2.0	26	92	0	88	24	24	22	28	2.00
5292983--5293035	26	2.0	26	92	0	88	26	24	18	30	1.98
5293097--5293598	277	1.8	276	86	2	738	22	25	25	26	2.00
5294132--5294187	26	2.2	26	90	0	85	30	26	14	28	1.95
5296383--5296717	159	2.1	159	81	2	386	18	29	28	22	1.98
5296638--5296804	84	2.0	84	93	0	289	14	36	25	23	1.93
5296806--5296909	26	4.0	26	91	2	174	28	25	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5296806--5296915	51	2.2	51	91	3	177	30	25	18	26	1.98
5297760--5297812	26	2.0	26	88	0	79	28	20	20	30	1.98
5296883--5300171	872	3.7	871	87	5	4633	26	24	23	25	2.00
5301911--5301966	26	2.2	26	87	6	78	33	23	14	28	1.94
5302654--5302704	26	2.0	26	84	0	66	27	21	17	33	1.96
5300179--5305190	898	5.6	884	78	11	4436	26	24	24	25	2.00
5303706--5303758	26	2.0	26	96	0	97	26	24	20	28	1.99
5305282--5305334	26	2.0	26	92	0	88	28	24	18	28	1.98
5306179--5306231	26	2.0	26	92	0	88	28	24	18	28	1.98
5305213--5306956	883	2.0	891	87	2	2551	24	24	25	25	2.00
5307777--5307829	26	2.0	26	96	0	97	28	26	18	26	1.98
5309077--5309135	26	2.5	24	83	10	68	50	15	10	23	1.74
5306892--5311150	847	4.9	850	83	7	4848	25	24	24	25	2.00
5310375--5310427	26	2.0	26	96	0	97	26	24	22	26	2.00
5309501--5311142	885	1.8	891	85	3	2324	25	23	24	26	2.00
5311967--5312019	26	2.0	26	92	0	88	26	22	20	30	1.98
5313631--5313683	26	2.0	26	100	0	106	26	26	20	26	1.99
5315353--5315405	26	2.0	26	96	0	97	26	24	20	28	1.99
5317087--5317165	26	3.0	26	94	0	140	26	26	18	27	1.98
5312124--5321548	860	10.8	866	82	6	10496	26	24	23	25	2.00
5320616--5320666	26	2.0	26	92	7	86	31	27	11	29	1.92
5321522--5321574	26	2.0	26	89	7	81	26	24	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5322327--5322378	26	2.0	26	96	0	95	26	25	19	28	1.98
5321848--5324143	896	2.6	898	87	3	3317	26	25	24	24	2.00
5323943--5324305	159	2.3	159	83	3	446	20	28	28	22	1.98
5324282--5324337	26	2.2	26	96	0	103	28	23	19	28	1.98
5325161--5325213	26	2.0	26	92	0	88	28	28	18	24	1.98
5326928--5326980	26	2.0	26	96	0	97	28	26	18	26	1.98
5330246--5330298	26	2.0	26	92	7	90	30	26	16	26	1.97
5333874--5333926	26	2.0	26	100	0	106	26	26	20	26	1.99
5334765--5334817	26	2.0	26	85	7	72	24	22	22	30	1.99
5330538--5344657	903	15.7	901	84	5	17008	25	24	24	25	2.00
5335663--5335715	26	2.0	26	88	0	79	30	22	20	26	1.98
5327071--5344599	903	19.6	870	80	8	16716	25	24	24	25	2.00
5337420--5337467	25	1.9	25	95	0	87	25	27	20	27	1.99
5338329--5338380	26	2.0	26	92	0	86	26	23	19	30	1.98
5339226--5339278	26	2.0	26	100	0	106	30	26	16	26	1.97
5341875--5341927	26	2.0	26	92	0	88	28	24	18	28	1.98
5343681--5343733	26	2.0	26	96	0	97	28	26	18	26	1.98
5344570--5344622	26	2.0	26	96	0	97	26	24	20	28	1.99
5345328--5345378	26	2.0	26	100	0	102	23	27	19	29	1.98
5346231--5346280	26	1.9	26	95	0	91	26	26	18	30	1.98
5344654--5347940	902	3.7	892	86	4	4205	26	24	23	25	2.00
5348131--5348182	26	2.0	26	88	0	77	28	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5351479--5351530	26	2.0	26	92	3	88	36	25	11	26	1.90
5350557--5353417	872	3.2	875	83	5	3435	25	24	23	26	2.00
5350551--5353385	895	3.2	883	83	5	3505	25	24	23	26	2.00
5353258--5353310	26	2.0	26	96	0	97	32	24	16	26	1.97
5353572--5353624	26	2.0	26	96	0	97	26	26	18	28	1.98
5353211--5353777	314	1.8	314	84	4	786	19	26	30	23	1.98
5354472--5355328	431	2.0	430	86	3	1215	23	22	25	27	2.00
5355781--5355833	26	2.0	26	85	0	70	26	24	16	32	1.97
5356667--5356719	26	2.0	26	88	0	79	26	20	18	33	1.96
5357511--5357564	26	2.1	26	92	0	90	22	24	25	27	2.00
5359259--5359311	26	2.0	26	96	0	97	28	26	18	26	1.98
5358399--5362436	885	4.5	898	86	3	5338	25	24	24	25	2.00
5361945--5361997	26	2.0	26	92	0	88	28	24	20	26	1.99
5362635--5362684	26	1.9	26	91	0	82	30	24	18	28	1.97
5361755--5363126	688	2.0	688	87	2	1986	22	24	25	26	2.00
5362443--5368606	902	6.9	899	84	4	7736	25	25	24	25	2.00
5365313--5365365	26	2.0	26	92	0	88	30	24	20	24	1.99
5367075--5367128	26	2.1	26	89	0	81	27	24	18	29	1.98
5367980--5368031	26	2.0	25	85	3	68	28	21	21	28	1.98
5369567--5369619	26	2.0	26	92	0	88	24	24	22	28	2.00
5369700--5369736	11	3.4	11	100	0	74	27	37	24	10	1.88
5370493--5370545	26	2.0	26	96	0	97	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5372114--5372166	26	2.0	26	100	0	106	26	26	20	26	1.99
5373850--5373902	26	2.0	26	96	0	97	28	26	18	26	1.98
5373190--5377405	882	4.8	861	80	10	4217	26	24	23	25	2.00
5375606--5375658	26	2.0	26	100	0	106	26	26	20	26	1.99
5372266--5377379	845	5.9	849	78	11	4375	25	24	24	25	2.00
5377193--5377546	159	2.2	159	84	0	447	22	29	27	19	1.98
5378197--5378542	159	2.2	159	86	2	471	21	28	28	21	1.99
5378520--5378598	26	3.0	26	94	0	140	29	25	18	26	1.98
5379433--5379485	26	2.0	26	92	0	88	28	22	20	28	1.99
5378546--5381117	895	2.9	887	85	4	3324	25	24	23	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120