genome.fa.s146.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  82  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10522742--10522833	20	4.4	20	75	10	94	48	22	7	20	1.74
10526834--10526878	3	15.0	3	100	0	90	66	0	0	33	0.92
10527436--10527520	35	2.4	36	81	13	97	17	12	10	58	1.62
10527660--10527825	71	2.3	71	79	10	162	18	18	14	48	1.81
10528358--10528436	21	3.7	21	74	14	72	74	6	0	18	1.02
10528386--10528451	5	12.8	5	74	17	55	75	3	0	21	0.93
10528400--10528450	19	2.7	19	80	17	61	74	1	0	23	0.92
10529993--10530036	18	2.6	16	82	7	52	22	9	9	59	1.56
10530105--10530140	17	2.1	17	89	5	54	72	0	5	22	1.05
10530467--10530514	12	3.8	12	73	10	51	52	25	6	16	1.67
10530491--10530592	20	5.2	19	68	10	62	50	20	4	23	1.67
10530489--10530592	38	2.7	40	82	5	124	50	20	4	24	1.67
10530573--10530604	12	2.7	12	95	0	55	50	25	6	18	1.70
10532472--10532499	6	4.7	6	100	0	56	67	0	0	32	0.91
10532662--10532706	10	4.6	10	80	5	56	11	6	24	57	1.57
10532650--10532706	29	2.0	29	89	0	87	15	7	21	56	1.63
10538919--10538945	2	13.5	2	100	0	54	51	0	0	48	1.00
10540902--10540955	17	3.4	17	82	10	69	57	0	0	42	0.98
10547814--10547944	18	7.4	18	84	2	151	45	16	14	24	1.84
10547814--10547944	9	14.9	9	69	15	87	45	16	14	24	1.84
10547814--10547944	35	3.7	35	82	4	147	45	16	14	24	1.84
10547814--10547944	53	2.5	53	84	1	165	45	16	14	24	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10548042--10548207	91	1.8	90	85	1	233	45	11	6	37	1.65
10548042--10548193	22	6.7	23	69	10	80	44	11	6	37	1.67
10548042--10548207	45	3.7	46	81	2	201	45	11	6	37	1.65
10550016--10550062	12	3.8	12	78	18	51	4	17	2	76	1.04
10550016--10550064	13	3.8	13	75	20	50	4	18	2	75	1.06
10560411--10560444	15	2.2	16	89	5	52	44	0	5	50	1.26
10565154--10565195	16	2.4	18	84	11	61	78	4	4	11	1.06
10566043--10566108	22	3.1	20	80	8	60	43	3	13	39	1.60
10566138--10566180	3	14.7	3	95	4	79	65	0	0	34	0.93
10566227--10566669	22	20.5	22	70	11	166	50	5	8	35	1.57
10566437--10566537	21	4.7	21	68	12	62	50	5	7	35	1.56
10566637--10566689	19	2.6	19	85	8	61	47	3	11	37	1.58
10566780--10566937	22	7.2	22	70	9	81	49	8	5	36	1.58
10566799--10566850	18	2.5	21	79	17	56	51	3	3	40	1.38
10566815--10566962	22	6.8	22	74	5	77	46	8	6	38	1.60
10566933--10566976	21	2.0	22	86	4	63	38	6	11	43	1.67
10566940--10566992	21	2.5	20	76	11	52	33	13	11	41	1.80
10567226--10567401	22	8.0	22	69	11	67	48	5	10	35	1.61
10567256--10567340	44	1.9	44	80	4	100	47	4	8	40	1.54
10567256--10567408	67	2.3	65	83	7	182	45	5	9	38	1.62
10567365--10567427	22	2.8	22	75	2	63	49	3	12	34	1.57
10567429--10567710	22	12.9	22	68	11	80	47	6	10	36	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10567467--10567522	21	2.6	22	80	11	71	48	3	7	41	1.48
10567628--10567735	44	2.4	45	80	3	121	42	4	11	41	1.61
10567630--10567749	22	5.5	22	75	5	82	41	4	12	41	1.62
10567770--10567896	11	11.6	11	69	5	69	47	5	5	41	1.50
10567758--10567902	22	6.6	22	74	9	73	45	4	7	42	1.54
10567802--10567902	44	2.3	43	83	5	114	47	5	6	39	1.55
10568898--10568929	16	1.9	17	93	6	57	53	18	9	18	1.71
10570582--10570650	22	3.1	22	78	0	75	43	2	11	42	1.56
10570955--10571081	21	6.0	21	73	19	95	48	9	11	31	1.71
10571080--10571135	27	2.1	26	86	3	76	48	1	7	42	1.41
10570954--10571133	21	8.2	21	71	13	94	48	7	10	34	1.64
10571197--10571250	27	1.9	28	81	7	65	55	3	1	38	1.28
10571581--10571630	19	2.5	21	83	6	59	48	4	0	48	1.20
10580411--10580467	19	3.1	19	80	16	66	35	0	12	52	1.39
10584183--10584221	19	2.1	19	100	0	78	64	10	5	20	1.44
10591278--10591599	164	2.0	165	89	0	493	34	12	11	40	1.79
10593990--10594114	18	6.9	18	70	17	73	30	4	32	33	1.76
10593988--10594085	33	2.8	35	75	9	103	29	4	27	38	1.75
10594458--10594494	6	6.2	6	90	0	56	29	48	0	21	1.50
10594460--10594495	18	2.0	18	94	0	63	27	47	0	25	1.52
10597907--10597955	25	1.9	26	95	4	91	40	8	2	48	1.44
10598180--10598217	20	2.0	20	89	5	60	60	5	0	34	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10598451--10598542	39	2.4	39	88	1	132	21	61	2	14	1.43
10598423--10598504	20	4.2	20	66	25	57	23	63	0	13	1.29
10601643--10601705	32	2.0	32	90	0	99	25	26	22	25	2.00
10602267--10602316	11	5.0	10	76	16	50	74	0	24	2	0.93
10602383--10602423	19	2.2	19	87	12	59	43	7	0	48	1.30
10602395--10602438	19	2.5	17	85	10	54	43	2	2	52	1.26
10602664--10602727	27	2.4	27	80	15	78	32	9	0	57	1.30
10603602--10603641	16	2.6	15	84	4	53	52	0	0	47	1.00
10603720--10603773	24	2.3	23	77	22	58	40	7	5	46	1.55
10607054--10607334	149	1.9	149	90	1	447	47	9	3	38	1.55
10610686--10610765	41	1.9	43	89	5	128	30	21	18	30	1.97
10611433--10611524	27	3.3	27	64	8	67	39	11	6	42	1.68
10611431--10611581	57	2.6	57	89	3	230	37	11	7	43	1.70
10611561--10611620	30	2.0	30	100	0	120	26	16	6	50	1.70
10611501--10611678	88	2.0	89	91	4	288	33	11	7	47	1.68
10611591--10611967	59	6.5	58	84	4	490	35	12	7	43	1.71
10611444--10611735	147	2.0	144	87	7	419	34	11	7	46	1.69
10611591--10611968	117	3.2	117	92	2	618	35	12	7	43	1.71
10612003--10612094	6	15.7	6	69	20	61	78	2	5	14	1.02
10611995--10612093	5	19.4	5	75	15	71	77	3	5	14	1.05
10611995--10612093	22	4.6	21	71	18	78	77	3	5	14	1.05
10611985--10612171	17	11.3	16	69	19	84	74	4	3	17	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10612117--10612164	4	12.5	4	82	8	64	77	4	0	18	0.93
10612928--10612962	9	3.9	9	88	0	52	88	2	0	8	0.61
10612936--10613182	5	48.2	5	69	22	74	74	2	2	21	1.02
10612950--10613051	36	2.9	35	73	21	81	68	2	3	24	1.20
10613024--10613164	12	11.3	12	72	18	62	73	1	0	24	0.96
10612946--10613088	77	1.9	75	82	8	182	69	2	2	25	1.12
10613009--10613182	17	10.2	17	69	19	69	74	1	1	22	0.97
10613060--10613182	35	3.6	34	79	12	121	78	1	0	18	0.88
10613145--10613180	1	36.0	1	88	0	54	94	0	0	5	0.31
10613060--10613182	6	20.8	6	75	17	73	78	1	0	18	0.88
10613327--10613367	1	41.0	1	90	0	64	0	0	4	95	0.28
10613376--10613586	40	5.2	40	91	3	305	35	24	17	23	1.95
10613376--10613586	81	2.6	81	91	1	323	35	24	17	23	1.95
10614593--10614625	9	3.8	9	84	8	50	9	12	0	78	0.95
10614594--10614624	8	3.8	8	91	8	53	9	12	0	77	0.99
10619096--10619138	21	2.0	21	90	4	68	62	4	9	23	1.44
10619224--10619344	5	22.0	5	76	20	84	75	3	2	19	1.06
10619223--10619343	6	20.7	6	74	16	62	76	3	2	18	1.04
10619216--10619369	28	5.8	25	74	17	98	75	2	5	16	1.09
10622738--10623079	171	2.0	171	90	2	535	32	12	19	35	1.89
10623603--10623648	24	2.0	23	83	12	58	39	6	2	52	1.40
10626749--10626774	11	2.4	11	100	0	52	50	0	15	34	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10630482--10630580	19	5.1	21	77	19	92	32	3	11	53	1.51
10630469--10630590	55	2.2	55	86	1	172	31	3	10	54	1.51
10630462--10630556	36	2.7	35	85	6	111	32	3	9	54	1.48
10630716--10630765	18	2.9	18	82	8	61	30	6	10	54	1.58
10630708--10630869	34	4.6	34	76	11	148	33	9	9	48	1.67
10630824--10630857	14	2.5	13	86	9	50	29	5	11	52	1.61
10630824--10630938	34	3.5	32	76	11	108	29	7	13	48	1.71
10631706--10631775	35	2.0	35	100	0	140	37	17	14	31	1.89
10633783--10633835	22	2.3	23	81	12	65	73	0	20	5	1.03
10635251--10635542	38	7.8	38	71	7	148	30	11	18	39	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120