genome.fa.s146.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  30  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3288392--3288503	45	2.5	45	79	5	127	23	34	24	17	1.96
3288446--3288550	45	2.3	45	83	0	120	19	31	30	19	1.96
3288989--3289041	26	2.0	26	100	0	106	30	20	22	26	1.98
3295037--3295087	25	2.0	25	92	0	84	25	19	25	29	1.99
3295537--3295587	26	2.0	26	88	0	75	31	17	23	27	1.97
3295883--3295935	26	2.0	26	89	7	81	24	16	28	30	1.97
3297317--3297369	26	2.0	26	85	7	72	28	16	26	28	1.97
3297981--3298113	45	3.0	45	79	5	137	17	26	35	21	1.95
3299195--3299324	43	3.0	44	80	4	129	20	35	26	16	1.94
3299516--3299573	26	2.2	27	84	3	73	62	6	5	25	1.42
3299938--3299990	26	2.0	26	85	7	72	28	26	16	28	1.97
3301372--3301424	26	2.0	26	89	7	81	30	28	16	24	1.97
3301721--3301771	26	2.0	26	92	0	84	27	25	17	29	1.98
3302221--3302271	25	2.0	25	92	0	84	29	25	19	25	1.99
3308252--3308305	26	2.0	27	92	3	92	27	25	18	27	1.98
3308749--3308981	45	5.2	45	75	6	170	20	29	32	18	1.96
3309862--3309914	26	2.0	26	88	0	79	30	26	18	24	1.98
3310216--3310266	26	2.0	26	92	0	84	29	27	15	27	1.96
3310705--3310850	45	3.2	45	74	5	134	19	32	29	17	1.95
3311804--3311856	26	2.0	26	92	7	90	26	26	20	26	1.99
3311649--3312028	197	1.9	196	82	4	480	21	26	28	24	1.99
3312160--3312212	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3315644--3315696	26	2.0	26	88	0	79	32	24	16	26	1.97
3316150--3316345	45	4.4	44	75	8	171	18	30	32	18	1.95
3317285--3317337	26	2.0	26	88	0	79	30	26	18	24	1.98
3317131--3317508	195	1.9	196	82	4	478	23	27	26	22	2.00
3318858--3318910	26	2.0	26	89	7	81	26	24	20	28	1.99
3319213--3319265	26	2.0	26	89	7	81	32	24	16	26	1.97
3320295--3320347	26	2.0	26	88	0	79	28	28	16	26	1.97
3321174--3321331	45	3.5	45	80	3	174	20	29	32	17	1.95
3322274--3322324	26	2.0	26	92	7	86	29	29	15	25	1.96
3322118--3322494	196	1.9	196	81	4	456	22	27	27	22	1.99
3323100--3323300	90	2.2	90	79	5	219	21	28	31	18	1.97
3323222--3323311	45	2.0	44	91	2	144	23	28	30	17	1.97
3323222--3323331	45	2.5	44	85	7	141	22	27	31	18	1.97
3324243--3324293	26	2.0	26	84	0	66	27	25	17	29	1.98
3329410--3329462	26	2.0	26	89	7	81	30	24	16	28	1.97
3330287--3330440	45	3.5	44	70	11	116	18	31	32	16	1.94
3331385--3331437	26	2.0	26	96	0	97	26	28	20	24	1.99
3331738--3331790	26	2.0	26	92	0	88	26	24	22	26	2.00
3332250--3332302	26	2.0	26	88	0	79	28	26	18	26	1.98
3332447--3332499	26	2.0	26	85	0	70	24	24	18	32	1.97
3332958--3333108	45	3.4	45	76	7	126	18	27	32	21	1.97
3333797--3333848	25	2.0	26	85	3	70	25	21	19	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3333684--3333996	172	1.8	168	80	6	378	20	27	26	25	1.99
3334284--3334451	45	3.7	45	78	0	165	20	29	31	18	1.96
3344794--3344944	45	3.4	43	75	4	142	18	29	33	17	1.94
3346128--3346177	26	1.9	26	95	0	91	28	26	18	28	1.98
3346819--3346843	13	1.9	13	100	0	50	24	36	16	24	1.94
3347464--3347627	45	3.6	45	81	4	179	20	30	33	15	1.94
3347464--3347658	90	2.2	91	83	5	236	20	30	32	15	1.94
3348499--3348551	26	2.0	26	96	0	97	26	28	20	24	1.99
3349031--3349235	45	4.6	45	74	4	189	20	29	32	18	1.96
3349033--3349235	90	2.3	90	81	1	237	20	29	32	18	1.96
3349033--3349267	90	2.6	88	76	10	215	20	28	32	18	1.96
3350533--3350585	26	2.0	26	88	0	79	28	18	18	33	1.95
3351044--3351196	45	3.4	45	85	0	144	18	30	33	16	1.93
3352133--3352185	26	2.0	26	92	0	88	28	28	18	24	1.98
3352955--3353147	45	4.3	45	74	2	138	20	30	31	18	1.96
3354542--3354694	45	3.4	45	76	3	139	19	28	33	18	1.95
3355636--3355688	26	2.0	26	92	0	88	32	28	15	24	1.95
3356216--3356323	45	2.4	45	84	0	126	22	29	30	17	1.97
3357919--3357957	13	3.0	13	88	0	60	23	33	17	25	1.96
3358833--3358885	26	2.0	26	86	13	74	32	18	16	32	1.94
3359632--3359794	45	3.6	45	72	6	166	21	31	26	19	1.97
3361140--3361191	25	2.1	24	89	3	77	25	25	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3361618--3361759	45	3.2	43	81	6	158	17	28	35	18	1.94
3361619--3361789	90	1.9	91	79	6	195	19	29	34	16	1.94
3364792--3364844	26	2.0	26	92	7	90	26	26	20	26	1.99
3365299--3365456	45	3.5	45	83	0	199	17	28	34	19	1.94
3367243--3367351	45	2.4	45	78	3	112	16	35	28	19	1.93
3369129--3369289	45	3.6	45	74	3	135	23	30	28	17	1.97
3370064--3370116	26	2.0	26	82	7	63	28	28	16	26	1.97
3372334--3372412	26	3.0	26	92	0	131	27	24	18	29	1.98
3372853--3373010	45	3.5	44	75	5	129	20	26	31	21	1.98
3379862--3379914	26	2.0	26	85	0	70	30	22	18	28	1.98
3380726--3380871	45	3.3	43	72	7	112	20	32	29	17	1.95
3381814--3381866	26	2.0	26	92	0	88	28	22	20	28	1.99
3382169--3382221	26	2.0	26	92	0	88	28	24	18	28	1.98
3382678--3382830	45	3.4	45	80	0	162	22	33	28	15	1.94
3390510--3390534	13	1.9	13	100	0	50	24	36	16	24	1.94
3392060--3392214	45	3.4	45	80	0	166	15	28	35	20	1.93
3393787--3393991	45	4.6	45	79	4	225	19	31	32	16	1.94
3393789--3393991	90	2.3	90	85	1	264	19	31	33	16	1.94
3395302--3395354	26	2.0	26	88	0	79	33	22	15	28	1.94
3395792--3395987	45	4.4	45	74	2	144	19	28	32	19	1.97
3396707--3396864	45	3.5	45	78	5	167	18	29	33	18	1.95
3397806--3397858	26	2.0	26	85	0	70	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3398593--3398792	45	4.5	44	75	6	170	20	31	31	17	1.95
3398588--3398792	90	2.3	90	82	5	236	20	31	31	16	1.95
3399855--3399904	26	1.9	26	83	0	64	28	26	14	32	1.94
3402298--3402457	45	3.6	44	75	8	126	19	26	35	19	1.95
3403349--3403401	26	2.0	26	88	0	79	26	26	22	24	2.00
3403246--3403800	195	2.8	194	81	3	612	22	26	26	23	2.00
3403740--3403792	26	2.0	26	85	0	70	30	22	18	28	1.98
3404069--3404411	162	2.1	162	82	3	404	23	26	24	25	2.00
3404670--3404771	45	2.3	45	92	0	168	18	26	35	19	1.95
3404670--3404789	45	2.7	45	89	0	159	18	25	35	20	1.95
3405681--3405733	26	2.0	26	85	0	70	28	24	18	28	1.98
3407003--3407160	45	3.5	44	79	1	145	20	28	32	17	1.96
3408103--3408161	26	2.3	26	82	5	77	28	28	16	25	1.97
3408459--3408510	26	2.0	26	92	3	88	26	23	23	26	2.00
3408962--3409167	45	4.6	45	73	8	143	21	26	31	19	1.98
3409006--3409199	90	2.2	90	80	5	205	22	25	30	20	1.98
3410084--3410982	332	2.7	330	81	3	976	22	27	27	23	1.99
3410782--3410834	26	2.0	26	88	0	79	28	26	18	26	1.98
3411287--3411531	45	5.4	45	77	0	186	21	29	31	17	1.96
3413058--3413110	26	2.0	26	92	0	88	28	28	18	24	1.98
3414862--3414914	26	2.0	26	92	0	88	28	24	18	28	1.98
3415218--3415270	26	2.0	26	85	0	70	26	26	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3415859--3415883	13	1.9	13	100	0	50	24	36	16	24	1.94
3415782--3416851	550	1.9	550	91	0	1739	22	23	26	27	2.00
3417607--3417659	26	2.0	26	88	0	79	28	22	18	30	1.98
3417940--3417992	26	2.0	26	92	0	88	26	22	20	30	1.98
3417456--3418155	333	2.1	332	80	2	794	21	28	27	22	1.99
3419883--3419935	26	2.0	26	92	7	90	26	26	20	26	1.99
3421336--3421387	26	2.0	26	88	7	79	28	26	17	26	1.97
3421625--3421677	26	2.0	26	88	0	79	30	24	18	26	1.98
3422352--3422376	13	1.9	13	100	0	50	24	36	16	24	1.94
3427856--3428060	45	4.6	45	74	6	157	21	26	31	20	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120