genome.fa.s146.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  115  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17368108--17368170	29	2.2	29	82	5	74	20	1	3	74	1.04
17368108--17368165	6	9.7	6	79	7	64	20	0	3	75	0.94
17368742--17368782	16	2.7	15	88	3	64	53	0	0	46	1.00
17368784--17368813	14	2.2	14	94	5	53	46	0	0	53	1.00
17368889--17369145	16	14.7	18	68	24	103	43	1	0	53	1.15
17368858--17369069	58	3.7	58	72	18	178	43	1	0	54	1.11
17368868--17369145	23	12.3	22	68	18	101	43	1	0	54	1.14
17378861--17379354	257	1.9	256	99	0	970	42	13	17	26	1.86
17383922--17383946	1	25.0	1	100	0	50	0	0	0	100	0.00
17384671--17384702	2	16.0	2	100	0	64	50	0	0	50	1.00
17385735--17385922	93	2.0	93	88	4	281	38	15	6	38	1.74
17389533--17389570	2	19.0	2	88	0	58	47	47	2	2	1.30
17389534--17389864	164	2.0	164	93	0	563	41	23	11	23	1.87
17395639--17395673	2	17.5	2	93	0	61	48	0	2	48	1.16
17395419--17395920	255	2.0	255	86	4	708	37	15	10	35	1.83
17395895--17395920	2	13.0	2	100	0	52	50	0	0	50	1.00
17401345--17401372	2	14.0	2	100	0	56	0	50	0	50	1.00
17406168--17406202	18	1.9	18	88	11	54	51	0	0	48	1.00
17419936--17420002	27	2.5	28	78	7	68	53	2	0	43	1.16
17419910--17420011	28	3.7	27	73	11	73	54	4	0	40	1.22
17429636--17429700	25	2.6	25	78	7	69	50	0	0	49	1.00
17429667--17429691	12	2.1	12	100	0	50	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17429863--17429895	14	2.3	15	89	5	50	36	6	3	54	1.41
17438843--17438885	16	2.7	16	100	0	86	34	30	16	18	1.93
17452142--17452166	7	3.6	7	100	0	50	60	12	28	0	1.32
17460586--17460619	18	1.9	18	88	5	52	29	11	0	58	1.33
17460819--17460894	39	1.9	38	84	10	100	42	0	6	51	1.28
17460827--17460893	32	2.1	32	82	0	80	43	0	4	52	1.21
17460892--17460925	14	2.4	14	90	5	50	14	0	2	82	0.79
17462421--17462496	29	2.8	28	74	9	86	39	0	0	60	0.97
17462435--17462490	23	2.3	26	75	9	64	39	0	0	60	0.97
17482466--17482508	2	21.5	2	95	0	77	46	0	0	53	1.00
17485364--17485403	20	1.9	22	90	10	66	47	0	0	52	1.00
17487206--17487244	19	2.0	19	90	5	60	46	0	0	53	1.00
17487206--17487246	20	2.0	20	86	9	57	46	0	0	53	1.00
17488597--17488634	18	2.1	18	90	0	58	34	0	2	63	1.09
17488697--17488739	16	2.4	18	88	11	63	69	0	2	27	1.00
17494275--17494320	22	2.0	23	83	4	58	32	0	4	63	1.14
17495129--17495166	21	1.9	20	89	10	60	10	0	10	78	0.95
17495129--17495167	20	1.9	21	89	5	62	10	0	10	79	0.94
17508594--17508902	157	2.0	157	100	0	618	40	13	13	32	1.84
17516906--17516938	17	1.9	17	93	0	57	27	6	0	66	1.15
17522994--17523027	2	17.0	2	100	0	68	50	0	0	50	1.00
17523884--17523913	2	15.0	2	92	0	51	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17524816--17524843	2	14.0	2	100	0	56	50	0	0	50	1.00
17525935--17526016	42	2.0	42	100	0	164	39	14	12	34	1.84
17535506--17535580	30	2.5	30	86	0	96	46	8	10	34	1.68
17536426--17536494	18	4.1	17	74	17	63	37	0	0	62	0.96
17536489--17536533	20	2.4	19	82	13	58	53	0	0	46	1.00
17540464--17540523	26	2.4	25	81	10	70	46	0	3	50	1.18
17540447--17540530	28	3.0	28	73	15	77	48	0	2	48	1.14
17543329--17543368	3	13.3	3	83	0	53	32	2	32	32	1.71
17543335--17543372	12	3.2	12	88	0	58	36	2	28	31	1.71
17550577--17550671	42	2.3	41	78	8	102	31	4	7	56	1.46
17550707--17550777	25	2.9	24	75	10	63	53	0	1	45	1.09
17552554--17552612	25	2.4	25	91	0	91	69	0	1	28	0.98
17557910--17557967	26	2.3	26	93	3	100	46	10	8	34	1.69
17559471--17559499	2	14.5	2	100	0	58	51	0	48	0	1.00
17563011--17563040	2	15.0	2	92	0	51	53	0	0	46	1.00
17563877--17563913	20	2.0	20	89	10	60	54	13	5	27	1.61
17566571--17566604	2	17.0	2	93	0	59	47	0	2	50	1.16
17592520--17592639	42	2.9	42	79	7	129	35	33	12	18	1.88
17599094--17599128	15	2.3	15	90	0	52	82	2	0	14	0.77
17599094--17599128	14	2.4	15	90	4	54	82	2	0	14	0.77
17601534--17601564	15	2.1	15	94	5	55	45	0	0	54	0.99
17607074--17607126	21	2.4	22	82	14	65	71	9	0	18	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17611252--17611278	7	3.9	7	100	0	54	88	0	0	11	0.50
17614483--17614921	15	27.9	16	69	17	196	53	1	2	43	1.23
17614562--17614719	34	4.3	34	68	20	111	55	1	0	42	1.12
17614556--17614714	57	2.8	57	75	14	173	57	1	0	40	1.11
17614488--17614781	114	2.6	113	80	9	286	55	2	0	41	1.16
17614528--17614929	42	9.6	41	69	20	158	52	1	1	43	1.22
17614849--17614890	20	2.0	21	90	9	68	52	0	0	47	1.00
17614893--17614930	20	1.9	19	89	5	58	55	0	2	42	1.14
17614707--17614944	46	5.2	47	69	18	137	48	1	3	46	1.28
17614935--17614987	18	2.8	18	86	11	63	43	3	0	52	1.19
17619733--17619796	25	2.5	26	75	12	71	45	0	0	54	0.99
17625119--17625159	18	2.2	19	95	4	75	31	12	39	17	1.86
17625769--17625835	25	2.6	25	77	11	82	55	11	8	23	1.64
17627162--17627240	36	2.2	36	93	0	131	53	10	13	22	1.70
17628736--17628766	4	7.8	4	92	0	53	25	25	0	48	1.52
17631200--17631229	14	2.1	14	93	0	51	10	0	3	86	0.67
17634372--17634419	23	2.3	21	80	16	55	45	16	8	29	1.76
17635545--17635591	15	3.1	15	82	11	53	23	0	10	65	1.23
17635700--17635749	16	3.3	15	81	16	50	30	2	0	68	1.01
17635700--17635749	15	3.3	14	83	13	55	30	2	0	68	1.01
17635692--17635749	30	1.9	30	83	13	75	31	3	0	65	1.09
17636004--17636119	61	1.9	61	83	3	153	31	6	11	50	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17637130--17637155	12	2.2	12	100	0	52	26	15	0	57	1.38
17644489--17644547	31	1.9	31	96	0	109	32	15	11	40	1.83
17645593--17645642	2	25.0	2	91	0	82	2	48	0	50	1.12
17651970--17652019	25	2.0	25	100	0	100	28	12	20	40	1.87
17655399--17655444	20	2.2	21	88	3	67	26	4	8	60	1.44
17655435--17655474	14	2.9	14	88	3	64	30	0	0	70	0.88
17655479--17655505	14	1.9	14	100	0	54	22	0	22	55	1.44
17675050--17675094	23	2.0	23	82	8	56	22	0	8	68	1.16
17675214--17675251	11	3.5	11	88	0	58	7	2	15	73	1.17
17675314--17675365	15	3.5	15	73	5	52	28	0	9	61	1.27
17681029--17681056	14	2.0	14	100	0	56	28	14	21	35	1.92
17683662--17683703	13	3.2	13	77	12	50	30	2	9	57	1.44
17684021--17684096	27	2.9	27	69	16	70	51	1	0	47	1.09
17684195--17684246	26	2.0	27	88	3	79	32	3	0	63	1.12
17686949--17687019	36	2.0	36	100	0	142	45	1	8	45	1.42
17696772--17696810	2	19.5	2	100	0	78	51	0	0	48	1.00
17701473--17701523	25	2.0	26	81	11	61	43	3	1	50	1.31
17724184--17724239	20	2.9	19	79	10	60	39	0	1	58	1.08
17725064--17725108	23	1.9	24	86	4	65	44	0	0	55	0.99
17725082--17725119	20	2.0	20	84	5	51	44	0	0	55	0.99
17727672--17727731	23	2.4	25	81	16	70	45	0	1	53	1.10
17728417--17728443	6	4.5	6	100	0	54	81	0	0	18	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17748053--17748078	12	2.2	12	100	0	52	23	0	0	76	0.78
17749711--17749789	41	1.9	42	86	2	115	51	3	5	39	1.42
17763771--17763795	3	8.3	3	100	0	50	0	36	0	64	0.94
17765037--17765083	22	2.1	23	84	11	62	57	2	6	34	1.36
17767553--17767590	20	2.0	19	85	10	51	55	0	0	44	0.99
17767642--17767682	21	2.0	21	85	9	57	39	2	4	53	1.35
17767639--17767690	22	2.4	21	81	9	61	34	1	3	59	1.27
17786561--17786608	13	3.7	13	77	8	53	47	0	0	52	1.00
17786570--17786661	27	3.8	25	71	22	79	53	1	0	45	1.07
17786595--17786638	21	2.1	21	84	12	56	50	2	0	47	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120