genome.fa.s146.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  29  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3182863--3182987	45	2.8	45	80	0	133	16	33	32	18	1.93
3183430--3183482	26	2.0	26	96	0	97	28	16	24	30	1.97
3183782--3183838	28	2.1	28	83	9	73	22	17	31	28	1.97
3184780--3184931	45	3.4	45	76	7	164	16	32	30	19	1.94
3184920--3185053	63	2.1	63	83	2	162	29	38	20	12	1.89
3185404--3185456	26	2.0	26	96	0	97	26	15	26	32	1.95
3186472--3186522	26	2.0	26	88	0	75	29	19	21	29	1.98
3186828--3186879	26	2.0	26	92	3	88	28	17	23	30	1.97
3187785--3187969	89	2.1	90	85	3	248	15	30	32	20	1.94
3187785--3187969	45	4.1	45	84	1	219	15	30	32	20	1.94
3188215--3188569	157	2.3	158	80	5	403	24	29	26	19	1.98
3188584--3188636	26	2.0	26	92	0	88	28	18	24	28	1.98
3188940--3188992	26	2.0	26	88	0	79	22	20	28	28	1.99
3189969--3190095	45	2.8	45	77	4	123	20	29	30	18	1.97
3190530--3190582	26	2.0	26	85	0	70	30	20	22	26	1.98
3190885--3190937	26	2.0	26	96	0	97	24	20	28	26	1.99
3191194--3191270	40	1.9	40	86	5	111	20	31	29	18	1.96
3191867--3191919	26	2.0	26	88	0	79	32	20	20	26	1.98
3192812--3193054	45	5.4	44	74	5	166	19	32	28	19	1.96
3193509--3193561	26	2.0	26	88	0	79	26	18	26	28	1.98
3193840--3193891	26	2.0	26	88	0	77	28	15	23	32	1.95
3193361--3194122	331	2.3	330	79	2	821	24	26	27	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3194181--3194233	26	2.0	26	92	0	88	24	15	28	32	1.95
3195132--3195378	90	2.7	90	77	2	237	20	32	26	20	1.97
3195176--3195381	45	4.6	45	77	1	198	19	33	27	19	1.97
3195833--3195884	26	2.0	26	96	3	97	26	21	25	26	1.99
3196022--3196081	26	2.4	26	83	5	79	26	16	28	28	1.97
3197024--3197170	45	3.3	45	80	0	123	19	31	27	21	1.97
3198452--3198504	26	2.0	26	92	0	88	26	16	26	30	1.97
3199385--3199504	45	2.7	45	90	0	177	20	35	25	17	1.95
3200773--3200825	26	2.0	26	92	0	88	22	20	30	26	1.98
3200378--3200980	196	3.1	196	81	1	681	23	26	26	23	2.00
3201770--3201979	45	4.7	45	75	3	172	19	33	28	19	1.96
3201770--3201969	90	2.2	90	79	5	217	20	33	28	19	1.96
3202412--3202464	26	2.0	26	92	0	88	26	18	24	30	1.98
3202727--3202773	21	2.2	21	96	0	85	6	31	31	29	1.83
3202801--3202853	26	2.0	26	85	7	72	28	18	24	28	1.98
3203794--3203996	90	2.3	90	82	1	237	17	32	30	20	1.96
3203794--3203998	45	4.6	45	75	2	196	17	31	30	20	1.96
3213944--3213996	26	2.0	26	92	0	88	26	20	26	26	1.99
3214944--3215081	45	3.1	45	81	0	159	17	26	34	21	1.96
3215531--3215583	26	2.0	26	92	0	88	26	20	26	26	1.99
3215886--3215938	26	2.0	26	92	0	88	28	20	22	28	1.99
3216868--3217031	45	3.6	45	75	3	123	17	30	31	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3217492--3217544	26	2.0	26	96	0	97	26	18	26	28	1.98
3224764--3224890	45	2.8	45	79	0	155	18	33	29	18	1.94
3225337--3225389	26	2.0	26	96	0	97	28	20	24	26	1.99
3226685--3226839	45	3.5	44	76	3	148	19	31	28	20	1.97
3227294--3227346	26	2.0	26	92	0	88	32	18	20	28	1.97
3228633--3228835	45	4.5	45	74	4	158	17	30	29	22	1.97
3228633--3228835	90	2.3	90	79	1	210	17	30	29	22	1.97
3228754--3229867	558	2.0	557	97	0	2102	22	27	27	22	1.99
3230138--3230190	26	2.0	26	92	0	88	24	18	28	28	1.98
3229968--3230345	196	1.9	194	81	5	449	23	28	26	20	1.99
3231666--3231718	26	2.0	26	92	0	88	28	18	24	28	1.98
3233020--3233173	45	3.4	44	80	7	166	18	35	29	16	1.93
3233004--3233173	90	1.9	90	83	0	223	18	33	30	17	1.94
3233822--3234183	195	1.9	195	80	4	433	24	29	25	21	1.99
3233822--3234198	196	1.9	195	80	3	427	23	29	24	21	1.99
3234945--3235056	45	2.5	45	80	8	129	25	34	25	15	1.94
3235556--3235608	26	2.0	26	92	0	88	28	18	24	28	1.98
3236710--3236849	45	3.1	44	82	4	172	18	32	30	18	1.95
3237276--3237327	25	2.1	24	86	10	70	30	21	23	25	1.99
3238597--3238889	90	3.3	89	86	4	367	18	30	30	21	1.96
3238597--3238891	45	6.6	45	74	2	243	17	30	30	21	1.96
3239314--3239372	26	2.3	26	81	16	79	25	16	25	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3239676--3239728	26	2.0	26	82	13	65	33	16	16	32	1.92
3240621--3240671	13	3.9	13	89	0	75	23	15	35	25	1.94
3241109--3241502	196	2.0	195	81	3	461	25	28	25	21	1.99
3242289--3242376	45	2.0	45	83	0	113	19	27	30	22	1.98
3242905--3242957	26	2.0	26	89	7	81	24	16	28	30	1.97
3243885--3244004	45	2.7	45	85	0	150	20	34	27	18	1.95
3245451--3245645	45	4.4	45	74	0	149	17	32	31	18	1.95
3246412--3246464	26	2.0	26	92	0	88	24	18	28	28	1.98
3247402--3247561	45	3.6	45	81	1	151	18	32	30	19	1.95
3248013--3248065	26	2.0	26	92	0	88	30	20	22	26	1.98
3248369--3248421	26	2.0	26	89	7	81	26	18	26	28	1.98
3249365--3249567	45	4.5	45	70	4	140	17	30	29	22	1.97
3249852--3249904	26	2.0	26	92	0	88	28	18	24	28	1.98
3250049--3250101	26	2.0	26	89	7	81	26	18	26	28	1.98
3250982--3251142	45	3.6	44	79	8	148	15	32	31	21	1.94
3250982--3251164	90	2.0	90	82	8	221	16	32	30	20	1.95
3251025--3251164	45	3.1	45	80	11	162	17	32	30	19	1.95
3251013--3251176	90	1.8	90	85	5	233	17	31	29	20	1.96
3259765--3259817	26	2.0	26	88	0	79	26	18	26	28	1.98
3260761--3260908	45	3.3	45	76	3	154	18	32	30	18	1.95
3261361--3261412	25	2.0	26	85	3	70	34	17	23	25	1.96
3261556--3261608	26	2.0	26	92	0	88	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3261947--3261999	26	2.0	26	85	0	70	26	16	26	30	1.97
3262711--3262763	26	2.0	26	92	0	88	32	18	24	24	1.97
3262909--3262961	26	2.0	26	88	0	79	28	20	24	26	1.99
3263421--3263473	26	2.0	26	92	0	88	26	20	24	28	1.99
3263774--3263826	26	2.0	26	92	0	88	24	18	28	28	1.98
3263603--3263981	196	1.9	196	80	3	440	22	28	26	22	1.99
3264755--3264922	90	1.9	90	84	0	228	17	31	31	19	1.95
3264756--3264919	45	3.7	44	77	6	159	17	31	31	18	1.95
3265377--3265428	26	2.0	26	92	0	86	26	19	23	30	1.98
3265530--3265580	21	2.4	21	83	0	66	11	43	23	21	1.85
3265755--3265812	26	2.2	27	84	9	75	25	17	27	29	1.97
3273062--3273111	26	1.9	26	88	8	75	30	18	26	26	1.98
3274040--3274186	45	3.3	43	75	6	123	15	35	29	19	1.93
3274056--3274258	90	2.3	90	79	0	208	17	33	29	20	1.95
3275041--3275093	26	2.0	26	85	0	70	26	15	28	30	1.96
3274884--3275254	195	1.9	195	81	4	444	24	29	26	19	1.99
3276123--3276175	26	2.0	26	88	0	79	28	16	24	30	1.97
3276466--3276518	26	2.0	26	89	7	81	28	20	24	26	1.99
3277894--3278270	195	1.9	195	80	7	435	23	27	26	22	2.00
3279053--3279243	45	4.3	44	74	9	154	19	32	28	19	1.96
3279028--3279204	90	2.0	91	83	5	225	19	31	28	20	1.97
3279701--3279753	26	2.0	26	92	0	88	28	22	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3280925--3281115	45	4.3	44	74	9	154	19	32	28	19	1.96
3280900--3281076	90	2.0	91	83	5	225	19	31	28	20	1.97
3281573--3281625	26	2.0	26	92	0	88	28	22	22	26	1.99
3282225--3282281	26	2.2	26	81	12	64	26	5	7	61	1.43
3285057--3285109	26	2.0	26	96	0	97	26	18	26	28	1.98
3285082--3285377	159	1.9	158	81	8	359	24	29	27	18	1.98
3285413--3285464	26	2.0	26	88	3	79	26	21	25	26	1.99
3286441--3286556	45	2.6	45	83	0	133	16	27	33	22	1.95
3287008--3287058	26	2.0	26	92	0	84	27	15	27	29	1.96
3287360--3287412	26	2.0	26	88	0	79	24	18	26	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120