genome.fa.s146.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  28  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3078151--3078265	45	2.6	45	85	2	151	21	29	31	17	1.96
3078307--3078342	13	3.0	13	80	19	51	22	25	22	30	1.99
3079564--3079616	26	2.0	26	96	0	97	26	24	20	28	1.99
3080067--3080171	45	2.3	45	85	0	147	18	33	33	15	1.92
3081111--3081163	26	2.0	26	92	0	88	26	26	20	26	1.99
3081469--3081518	26	2.0	25	84	4	64	28	20	20	32	1.97
3081959--3082163	45	4.6	45	80	2	241	21	30	31	16	1.95
3081961--3082198	90	2.6	90	87	2	309	21	30	31	16	1.95
3081959--3082201	45	5.4	44	79	2	218	20	30	31	16	1.95
3081959--3082201	135	1.8	135	82	1	317	20	30	31	16	1.95
3081959--3082251	135	2.2	135	79	3	304	22	29	29	18	1.97
3083932--3084037	45	2.4	45	88	3	160	16	29	36	17	1.92
3084960--3085012	26	2.0	26	85	0	70	28	24	18	28	1.98
3085426--3085478	26	2.0	26	92	7	90	26	26	20	26	1.99
3085256--3085649	196	2.0	196	81	2	459	20	28	29	21	1.98
3085778--3085831	26	2.1	26	92	0	90	27	22	18	31	1.97
3087730--3087782	26	2.0	26	100	0	106	26	22	20	30	1.98
3089961--3090165	45	4.6	45	75	7	166	20	30	30	18	1.96
3091109--3091159	26	2.0	26	84	7	68	31	23	17	27	1.97
3091964--3092139	45	3.9	45	73	5	131	21	30	28	19	1.97
3094234--3094436	45	4.6	44	69	6	140	19	26	33	20	1.96
3095744--3095796	26	2.0	26	88	0	79	30	26	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3097980--3098032	26	2.0	26	92	0	88	26	26	20	26	1.99
3099849--3099902	26	2.1	26	92	0	90	29	27	18	24	1.98
3100541--3100652	45	2.5	44	82	4	118	18	26	33	20	1.96
3107367--3107727	196	1.8	196	83	1	472	20	27	29	22	1.98
3108625--3108674	26	1.9	26	95	0	91	24	30	20	26	1.98
3109321--3109465	45	3.2	44	76	5	130	18	27	31	22	1.97
3111105--3111129	13	1.9	13	100	0	50	24	36	16	24	1.94
3112316--3112371	26	2.2	26	90	6	87	26	25	17	30	1.97
3112481--3112533	26	2.0	26	85	0	70	26	22	20	30	1.98
3112820--3112869	26	1.9	26	91	0	82	28	20	20	32	1.97
3112753--3113169	173	2.4	171	83	3	492	19	29	27	23	1.99
3112990--3113039	26	1.9	26	91	0	82	22	30	18	30	1.97
3114112--3114182	26	2.7	26	91	0	115	29	25	15	29	1.96
3114484--3114536	26	2.0	26	88	0	79	32	22	15	30	1.94
3114979--3115129	45	3.4	44	77	5	133	19	28	33	18	1.95
3116324--3116701	148	2.6	148	83	1	490	21	29	26	22	1.99
3117020--3117195	87	2.0	87	80	4	194	19	28	31	19	1.97
3117830--3117882	26	2.0	26	88	0	79	28	22	18	30	1.98
3117938--3118038	45	2.2	45	81	6	116	14	26	34	23	1.94
3118322--3118351	13	2.2	14	94	5	53	16	36	13	33	1.88
3118946--3118998	26	2.0	26	96	0	97	28	26	18	26	1.98
3119452--3119597	45	3.2	45	76	1	150	19	32	31	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3119640--3119664	13	1.9	13	100	0	50	24	36	16	24	1.94
3120540--3120592	26	2.0	26	89	7	81	26	24	22	26	2.00
3121098--3121255	45	3.5	45	88	1	210	18	30	32	18	1.95
3121098--3121295	90	2.2	90	80	1	209	19	29	32	18	1.96
3121298--3121322	13	1.9	13	100	0	50	24	36	16	24	1.94
3122027--3122079	26	2.0	26	89	7	81	24	26	22	26	2.00
3123831--3123912	27	3.0	26	79	13	94	28	24	20	26	1.99
3123661--3124061	219	1.8	222	79	5	472	21	24	28	24	1.99
3124207--3124259	26	2.0	26	92	0	88	26	22	20	30	1.98
3124710--3124884	45	3.9	45	75	8	158	20	29	32	17	1.96
3125855--3125907	26	2.0	26	85	7	72	28	24	18	28	1.98
3126210--3126262	26	2.0	26	96	0	97	26	28	20	24	1.99
3128812--3128896	45	1.9	44	82	2	107	18	28	34	18	1.95
3129997--3130049	26	2.0	26	96	0	97	26	28	20	24	1.99
3130353--3130405	26	2.0	26	89	7	81	26	24	20	28	1.99
3129975--3130734	355	2.1	356	90	2	1215	21	27	27	23	1.99
3131175--3131319	45	3.2	44	79	3	128	18	33	30	17	1.94
3132623--3132675	26	2.0	26	96	0	97	28	26	18	26	1.98
3132709--3133007	158	1.9	158	85	1	420	18	28	29	24	1.98
3133171--3133335	45	3.7	45	76	6	129	20	26	32	20	1.97
3134227--3134300	31	2.6	28	85	10	98	28	29	17	24	1.97
3135307--3135502	45	4.4	45	78	3	180	18	29	32	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3135307--3135497	90	2.1	90	80	0	220	18	29	32	19	1.95
3136547--3136848	159	1.9	159	83	4	394	19	27	27	25	1.99
3136547--3136882	159	2.1	159	81	4	392	20	27	27	24	1.99
3136582--3136963	159	2.4	158	80	6	398	19	27	28	24	1.98
3136936--3136986	26	2.0	26	88	0	75	27	23	19	29	1.98
3137424--3137547	45	2.8	45	92	0	203	23	30	29	16	1.96
3144415--3144467	26	2.0	26	89	7	81	28	24	20	26	1.99
3144775--3144827	26	2.0	26	96	0	97	26	24	22	26	2.00
3145253--3145303	26	2.0	26	84	0	66	27	25	17	29	1.98
3144510--3145579	478	2.2	478	83	2	1317	20	28	28	22	1.99
3145811--3145904	45	2.1	45	85	0	125	20	30	34	14	1.93
3145821--3145916	45	2.1	45	88	0	138	18	31	33	16	1.94
3145821--3145936	45	2.6	44	82	8	117	18	29	34	17	1.94
3147860--3148040	45	4.0	45	72	5	141	18	32	31	17	1.95
3147887--3148056	90	1.9	90	82	0	214	19	28	32	20	1.97
3147881--3148075	90	2.2	90	77	3	203	19	27	32	20	1.96
3148776--3148828	26	2.0	26	88	0	79	28	26	18	26	1.98
3151406--3151563	45	3.5	45	83	3	149	17	34	29	19	1.94
3152001--3152053	26	2.0	26	92	7	90	26	16	26	30	1.97
3152962--3153017	26	2.2	26	90	0	85	28	16	25	30	1.96
3153317--3153369	26	2.0	26	96	0	97	24	20	28	26	1.99
3153648--3153700	26	2.0	26	88	0	79	26	22	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3152958--3154246	686	1.9	686	82	3	1646	24	28	26	21	1.99
3155411--3155578	45	3.8	45	78	7	155	18	27	30	23	1.98
3157247--3157299	26	2.0	26	88	0	79	28	18	22	30	1.98
3157603--3157655	26	2.0	26	88	0	79	26	18	26	28	1.98
3159345--3159510	90	1.8	90	79	5	192	18	28	30	22	1.97
3160210--3160367	45	3.5	45	78	0	163	17	32	31	18	1.94
3160674--3160932	136	1.9	136	82	1	322	24	27	28	19	1.99
3161139--3161191	26	2.0	26	96	0	97	28	20	24	26	1.99
3161142--3161198	26	2.2	26	90	3	87	31	21	24	22	1.98
3162133--3162245	45	2.5	45	82	2	129	22	31	27	18	1.97
3162718--3162770	26	2.0	26	96	0	97	26	18	26	28	1.98
3164012--3164142	45	2.9	45	79	2	129	19	33	26	19	1.96
3164061--3164212	45	3.4	45	80	3	146	18	30	30	21	1.97
3164661--3164713	26	2.0	26	92	0	88	28	18	24	28	1.98
3166016--3166212	45	4.4	45	76	1	189	17	32	30	19	1.95
3166653--3166705	26	2.0	26	85	0	70	30	16	22	30	1.96
3167803--3167855	26	2.0	26	82	7	63	28	18	22	30	1.98
3168158--3168210	26	2.0	26	92	0	88	26	20	24	28	1.99
3166835--3168287	674	2.2	669	81	5	1692	24	27	27	21	1.99
3169723--3169775	26	2.1	24	86	6	70	28	18	20	32	1.97
3169730--3169782	26	2.0	26	85	0	70	28	18	24	28	1.98
3170082--3170134	26	2.0	26	88	0	79	26	20	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3170068--3170318	134	1.9	134	87	0	367	28	23	27	20	1.99
3171218--3171357	45	3.1	45	74	4	147	18	29	30	21	1.97
3171806--3171856	26	2.0	26	96	0	93	27	17	25	29	1.98
3172001--3172056	26	2.2	26	90	0	85	28	19	23	28	1.98
3173013--3173153	45	3.1	45	71	15	110	20	29	29	19	1.97
3179343--3179492	77	1.9	77	94	0	264	11	32	32	24	1.90
3179940--3179992	26	2.0	26	89	7	81	26	18	26	28	1.98
3180936--3181034	45	2.2	45	85	0	126	20	32	27	20	1.97
3181535--3181584	26	1.9	26	95	0	91	28	18	30	24	1.97
3181881--3181934	26	2.1	26	89	6	83	29	22	24	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120