genome.fa.s146.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  110  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16110274--16110330	10	6.1	10	68	15	50	47	0	0	52	1.00
16115086--16115134	15	3.4	15	68	21	50	51	8	14	26	1.70
16115088--16115147	28	2.1	28	100	0	120	53	10	15	21	1.70
16115378--16115420	2	21.5	2	100	0	86	0	48	0	51	1.00
16117529--16117562	12	2.6	13	90	9	52	50	8	26	14	1.72
16123395--16123437	22	2.0	22	90	9	70	34	0	0	65	0.93
16123396--16123456	12	5.4	12	74	18	60	36	0	0	63	0.94
16123435--16123464	15	2.0	15	93	0	51	30	0	0	70	0.88
16125616--16125666	12	4.1	12	74	18	50	41	3	1	52	1.31
16137320--16137479	80	2.0	80	97	0	302	37	19	11	31	1.87
16138164--16138197	15	2.2	16	89	5	52	38	0	0	61	0.96
16155801--16155850	15	3.3	15	72	25	50	46	2	4	48	1.32
16156094--16156161	36	1.9	36	87	3	102	51	1	8	38	1.42
16158071--16158099	14	2.1	14	100	0	58	51	0	6	41	1.28
16158213--16158274	27	2.4	26	84	10	65	54	1	0	43	1.09
16158221--16158274	26	2.0	27	92	3	92	57	0	0	42	0.98
16158393--16158564	13	13.3	13	68	25	73	40	0	2	56	1.16
16158381--16158580	57	3.1	64	73	20	184	41	0	2	56	1.14
16158375--16158576	46	4.5	46	73	15	151	41	0	1	55	1.15
16158395--16158580	31	6.1	31	73	16	140	40	0	2	56	1.15
16158461--16158592	46	3.0	44	78	10	101	43	0	1	54	1.15
16160116--16160145	2	15.0	2	100	0	60	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16170560--16170584	13	1.9	13	100	0	50	56	0	0	44	0.99
16171875--16171918	20	2.2	20	84	8	54	47	0	0	52	1.00
16171881--16171958	23	3.1	27	68	19	69	51	0	1	47	1.09
16171891--16171958	25	2.6	28	68	25	67	48	0	1	50	1.10
16172066--16172118	17	2.9	18	83	11	63	73	1	0	24	0.93
16172731--16172772	15	2.9	15	92	3	68	16	7	40	35	1.76
16172765--16172935	90	1.9	90	87	0	252	25	14	27	32	1.95
16172886--16172985	50	2.0	50	100	0	200	26	14	24	36	1.93
16173039--16173301	90	2.8	93	84	4	343	28	11	25	35	1.90
16173224--16173450	112	2.0	112	91	0	364	31	8	22	37	1.84
16174294--16174321	14	2.0	14	100	0	56	35	7	28	28	1.84
16175825--16175895	29	2.4	31	81	11	85	54	1	0	43	1.08
16177280--16177415	43	3.2	42	72	6	130	35	4	8	52	1.51
16177343--16177395	21	2.5	21	74	17	56	37	3	9	49	1.53
16177271--16177434	85	1.9	85	88	0	247	35	4	9	50	1.56
16178842--16178884	14	3.0	14	86	3	59	20	0	30	48	1.50
16178726--16178864	58	2.4	59	75	12	135	21	1	30	46	1.60
16178844--16178891	15	3.3	14	80	8	51	22	0	27	50	1.50
16178921--16179003	16	5.2	16	69	15	64	20	0	27	51	1.47
16178920--16179003	31	2.6	32	88	3	116	21	0	27	51	1.48
16178939--16179009	15	4.6	15	78	5	70	21	0	26	52	1.47
16182258--16182307	23	2.2	23	82	7	57	44	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16182263--16182322	30	2.0	30	83	6	77	41	0	0	58	0.98
16182276--16182322	23	2.0	23	87	0	67	36	0	0	63	0.94
16182279--16182328	23	2.2	23	81	0	55	42	2	0	56	1.11
16191759--16191828	17	3.9	18	71	14	56	25	0	2	71	1.00
16192202--16192346	31	4.6	30	72	16	91	47	28	2	21	1.62
16192200--16192302	16	6.4	16	70	10	68	46	27	1	24	1.63
16192202--16192346	32	4.6	32	72	16	90	47	28	2	21	1.62
16192200--16192270	17	4.4	17	75	12	60	46	22	2	28	1.66
16192209--16192346	16	8.8	15	73	10	64	47	30	2	19	1.61
16192361--16192472	30	3.7	31	70	13	83	45	27	1	25	1.63
16192483--16192538	23	2.4	23	85	5	69	44	21	3	30	1.69
16194104--16194143	20	2.1	19	85	4	53	50	2	5	42	1.37
16194267--16194307	21	2.0	21	85	0	55	63	7	0	29	1.21
16194423--16194461	19	2.1	18	85	4	51	61	2	5	30	1.31
16194597--16194634	5	7.6	5	87	0	58	15	18	0	65	1.27
16194717--16194750	13	2.6	13	90	0	50	52	2	0	44	1.16
16196064--16196120	20	2.7	21	79	17	57	54	0	0	45	0.99
16196148--16196186	12	3.0	13	88	7	53	71	2	0	25	0.98
16198589--16198613	7	3.6	7	100	0	50	44	0	0	56	0.99
16199399--16199447	22	2.3	20	77	16	53	42	0	0	57	0.99
16199411--16199469	23	2.6	23	84	7	68	42	0	0	57	0.98
16204065--16204179	51	2.2	50	83	10	142	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16204225--16204252	9	3.1	9	100	0	56	21	0	0	78	0.75
16205402--16205474	29	2.6	28	74	8	76	53	2	0	43	1.15
16207566--16207612	22	2.1	22	84	11	60	40	0	0	59	0.97
16209085--16209232	74	2.0	74	100	0	296	36	37	8	17	1.80
16211064--16211110	18	2.6	19	75	18	55	55	0	6	38	1.26
16219231--16219265	3	11.7	3	100	0	70	65	0	0	34	0.93
16219915--16219975	23	2.6	22	82	7	59	39	0	0	60	0.97
16245840--16245901	31	2.0	31	84	6	81	59	3	3	33	1.29
16246087--16246176	42	2.1	44	89	6	141	60	2	2	35	1.22
16246087--16246184	41	2.4	41	86	5	117	58	2	4	35	1.29
16246125--16246252	62	2.1	61	80	11	145	54	3	7	35	1.43
16246104--16246288	21	9.0	21	72	13	91	52	2	7	37	1.43
16246289--16246328	20	2.0	20	85	5	53	40	5	0	55	1.22
16252316--16252610	158	1.9	158	95	0	536	34	12	22	30	1.91
16253650--16253676	2	13.5	2	100	0	54	51	0	0	48	1.00
16259751--16259789	2	19.5	2	100	0	78	0	51	0	48	1.00
16276274--16276365	46	2.0	46	89	6	143	48	17	13	20	1.80
16276747--16276799	24	2.2	24	93	3	90	32	18	28	20	1.97
16281609--16281654	3	15.3	3	100	0	92	32	0	0	67	0.91
16283208--16283282	28	2.6	29	81	12	82	34	1	6	57	1.33
16283690--16283761	29	2.5	30	78	13	89	47	1	0	51	1.09
16284493--16284534	16	2.6	16	81	7	50	66	0	4	28	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16286575--16286605	15	2.1	15	93	0	53	58	0	3	38	1.15
16286811--16286901	35	2.6	34	82	5	103	34	3	4	58	1.34
16286833--16286901	35	2.0	34	94	2	120	36	4	4	55	1.40
16289664--16289720	27	2.1	27	100	0	114	31	17	7	43	1.76
16295465--16295499	3	11.7	3	100	0	70	31	0	0	68	0.90
16298106--16298134	2	14.5	2	100	0	58	0	48	0	51	1.00
16320622--16322940	696	3.3	692	83	3	2771	34	15	12	37	1.85
16327634--16327658	2	12.5	2	100	0	50	48	0	0	52	1.00
16330188--16330241	28	2.0	25	82	10	63	57	0	0	42	0.98
16330203--16330243	22	1.9	21	85	5	55	53	0	0	46	1.00
16330938--16330967	2	15.0	2	100	0	60	50	0	0	50	1.00
16341607--16341641	15	2.3	15	85	0	52	45	0	0	54	0.99
16341610--16341662	24	2.3	23	87	9	72	41	0	0	58	0.98
16342128--16342161	16	2.1	16	88	0	50	47	0	0	52	1.00
16347966--16348000	16	2.1	17	89	5	54	28	2	5	62	1.32
16351247--16351323	35	2.2	34	80	11	84	59	2	0	37	1.11
16363497--16363525	2	14.5	2	100	0	58	48	0	0	51	1.00
16367577--16367642	2	33.0	2	100	0	132	50	0	50	0	1.00
16380317--16380346	2	15.0	2	100	0	60	50	0	0	50	1.00
16382833--16382881	3	15.3	3	83	8	53	63	0	0	36	0.95
16383848--16383898	19	2.6	20	84	3	59	29	0	1	68	1.00
16383869--16383926	19	3.1	19	78	14	59	25	1	5	67	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16383912--16383964	22	2.3	23	83	3	63	33	0	7	58	1.26
16384323--16384459	15	8.7	15	80	7	121	46	32	1	19	1.59
16384335--16384387	7	6.9	7	78	18	52	52	24	0	22	1.47
16384323--16384458	32	4.3	31	77	8	132	47	31	1	19	1.59
16384323--16384455	47	2.8	47	82	4	178	48	30	1	20	1.59
16384379--16384451	16	4.6	16	77	6	76	45	31	2	20	1.65
16384323--16384459	63	2.2	63	81	6	170	46	32	1	19	1.59
16384438--16384479	21	2.0	22	86	13	61	47	45	0	7	1.30
16384459--16384513	14	3.8	14	79	13	58	50	34	0	14	1.43
16386188--16386221	7	4.9	7	88	0	50	20	14	20	44	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120