genome.fa.s146.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  86  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11194050--11194118	22	3.1	22	74	17	63	24	2	2	69	1.16
11194046--11194120	25	3.0	23	74	18	62	25	2	2	69	1.15
11194932--11194973	21	2.0	21	85	0	57	11	0	21	66	1.23
11195238--11195288	3	17.0	3	100	0	102	33	0	0	66	0.92
11195520--11195574	3	18.3	3	75	14	51	23	1	3	70	1.12
11195723--11195768	20	2.2	21	84	7	67	69	2	0	28	1.00
11196749--11196785	7	5.4	7	87	12	51	43	0	0	56	0.99
11203004--11203036	3	11.3	3	93	6	59	69	0	0	30	0.88
11206258--11206302	3	14.7	3	81	4	54	62	4	4	28	1.34
11209022--11209069	16	3.3	16	67	27	52	50	10	0	39	1.37
11209015--11209070	27	2.0	28	96	3	105	48	10	0	41	1.38
11210934--11210960	6	4.5	6	100	0	54	14	0	18	66	1.25
11212894--11212918	12	2.1	12	100	0	50	36	8	16	40	1.77
11219340--11219405	22	3.0	22	95	4	116	45	13	9	31	1.75
11221222--11221265	22	2.0	22	95	0	79	43	13	11	31	1.80
11222318--11222343	3	8.7	3	100	0	52	34	0	0	65	0.93
11222446--11222502	28	2.0	29	89	3	89	28	5	17	49	1.68
11227125--11227180	29	1.9	29	96	0	103	41	7	28	23	1.80
11227971--11228001	2	15.5	2	93	0	53	51	0	3	45	1.17
11229875--11229913	11	3.7	10	86	6	51	87	0	7	5	0.68
11231179--11231219	21	2.1	19	86	9	55	56	4	2	36	1.34
11236324--11236358	18	1.9	18	88	11	54	71	14	11	2	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11241431--11241463	17	1.9	17	88	11	50	36	27	18	18	1.94
11246958--11246992	2	17.5	2	100	0	70	48	0	0	51	1.00
11250919--11251221	59	5.1	58	76	12	294	36	9	5	47	1.61
11250918--11251221	119	2.6	119	79	12	331	36	9	5	47	1.61
11251277--11251344	24	2.8	24	71	8	59	70	1	5	22	1.17
11252886--11252910	12	2.1	12	100	0	50	16	16	0	68	1.22
11253369--11253404	3	12.0	3	100	0	72	33	0	0	66	0.92
11254720--11254850	3	46.3	3	74	14	109	34	1	3	61	1.21
11254779--11254876	39	2.4	39	81	6	97	33	2	5	59	1.31
11254867--11254891	6	4.2	6	100	0	50	16	0	0	84	0.63
11255269--11255320	20	2.6	19	77	11	59	19	3	28	48	1.66
11255692--11255782	19	4.6	19	77	10	85	19	3	3	73	1.11
11257023--11257056	17	1.9	17	88	5	50	0	5	5	88	0.64
11264219--11264360	51	2.8	51	85	2	196	42	19	9	28	1.83
11265580--11265668	19	4.7	19	82	8	94	75	3	3	17	1.08
11265630--11265673	10	4.4	11	78	18	51	79	4	0	15	0.89
11266501--11266567	5	13.0	5	83	13	75	61	2	0	35	1.12
11266499--11266608	3	39.0	3	74	12	99	60	3	2	32	1.28
11267450--11267516	35	1.9	35	96	0	125	35	17	5	40	1.75
11267524--11267565	15	2.8	15	85	7	50	11	4	2	80	0.95
11276754--11276852	27	3.5	28	81	10	105	59	4	2	34	1.28
11276754--11276800	9	5.3	9	84	2	51	65	4	0	29	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11276899--11276960	19	3.3	19	81	0	70	53	9	1	35	1.44
11276908--11276959	9	5.4	9	76	13	50	55	5	1	36	1.35
11276927--11276969	19	2.3	19	83	0	50	60	4	2	32	1.30
11276928--11277034	47	2.3	46	74	4	108	61	5	2	29	1.33
11277626--11277667	21	1.9	22	85	9	59	38	2	2	57	1.25
11277705--11277751	20	2.3	20	85	3	58	21	4	10	63	1.43
11277776--11277800	13	1.9	13	100	0	50	12	0	0	88	0.53
11286989--11287024	12	3.0	12	91	0	54	19	19	0	61	1.35
11286989--11287024	18	2.0	18	89	10	56	19	19	0	61	1.35
11294470--11294508	12	3.1	12	82	13	51	56	0	0	43	0.99
11296700--11296737	5	7.6	5	100	0	76	81	0	0	18	0.69
11296736--11296773	11	3.3	12	82	14	53	50	0	13	36	1.42
11299412--11299449	2	19.0	2	94	0	67	50	2	0	47	1.15
11319321--11319370	3	16.7	3	100	0	100	66	0	0	34	0.92
11319935--11319973	17	2.3	18	86	8	55	33	0	10	56	1.33
11320106--11320164	16	3.6	16	80	8	66	76	1	5	16	1.05
11320520--11320574	20	2.7	22	81	15	66	29	23	5	41	1.76
11320585--11320627	21	2.1	21	86	4	61	51	25	2	20	1.60
11320585--11320636	20	2.5	21	81	9	63	48	26	1	23	1.62
11320985--11321109	3	42.0	3	75	9	51	55	4	8	32	1.49
11321136--11321178	21	2.0	21	86	0	59	23	32	25	18	1.97
11321369--11321705	118	2.8	119	81	4	410	45	14	21	18	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11321920--11322174	86	3.0	85	81	1	285	39	12	19	28	1.88
11322102--11322228	68	1.9	68	89	0	200	44	14	15	24	1.85
11322164--11322380	87	2.5	87	84	5	264	42	11	14	30	1.82
11322035--11322329	155	1.9	154	85	2	403	41	13	16	27	1.87
11323424--11323473	25	2.0	24	84	3	64	4	12	4	80	1.00
11323324--11323473	79	1.9	77	84	8	187	8	12	10	69	1.37
11327239--11327279	16	2.6	16	88	11	59	34	0	9	56	1.32
11327359--11327402	18	2.4	18	82	14	54	2	20	4	72	1.13
11327440--11327497	16	3.6	16	80	13	66	77	1	5	15	1.02
11327432--11327516	27	3.2	26	76	12	82	80	1	4	14	0.94
11327465--11327515	17	3.1	15	83	10	57	82	0	5	11	0.83
11328319--11328433	3	38.3	3	78	8	119	60	2	3	33	1.28
11328516--11328560	3	15.0	3	100	0	90	66	0	0	33	0.92
11329377--11329405	13	2.2	13	100	0	58	51	0	0	48	1.00
11329387--11329428	22	1.9	22	85	9	59	59	0	0	40	0.97
11341601--11341640	20	2.0	20	90	0	62	20	0	5	75	0.99
11341836--11341869	16	2.1	16	88	0	50	38	2	0	58	1.13
11342090--11342132	3	14.3	3	95	0	77	65	0	0	34	0.93
11342168--11342216	12	4.0	12	78	5	53	83	4	2	10	0.85
11342136--11342209	25	3.0	24	78	11	78	79	5	2	12	1.00
11342137--11342213	30	2.6	30	82	10	86	81	5	2	10	0.93
11342137--11342215	19	4.4	18	75	9	63	82	5	2	10	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11342688--11342728	15	2.6	16	84	3	57	39	2	7	51	1.43
11343368--11343577	40	5.3	40	86	5	252	41	17	14	26	1.88
11343338--11343577	80	3.0	80	86	4	274	40	17	15	27	1.89
11345523--11345566	22	2.0	22	95	0	79	18	25	13	43	1.86
11355924--11355967	3	14.7	3	95	0	79	68	2	0	29	1.02
11355972--11356028	21	2.9	21	76	10	66	75	7	1	15	1.10
11356462--11356498	16	2.3	16	85	0	56	29	0	16	54	1.43
11364441--11364490	23	2.3	21	76	10	55	70	2	12	16	1.26
11364798--11364828	15	2.1	15	100	0	62	48	25	6	19	1.72
11365447--11365506	23	2.6	23	81	7	68	66	5	1	26	1.21
11365465--11365513	17	2.8	18	79	14	50	71	4	0	24	1.03
11366373--11366512	3	52.3	3	65	24	55	57	2	2	37	1.29
11366376--11366534	5	32.0	5	75	13	141	56	3	3	37	1.31
11366376--11366570	13	14.8	13	67	25	58	56	3	4	35	1.35
11371714--11371763	15	3.3	15	80	2	55	16	2	26	56	1.51
11373856--11373904	16	3.1	16	79	5	55	59	4	2	34	1.28
11374124--11374148	1	25.0	1	100	0	50	100	0	0	0	0.00
11374163--11374196	17	2.0	17	94	0	59	44	23	20	11	1.84
11374808--11374874	31	2.2	30	86	2	89	47	8	4	38	1.55
11375001--11375040	2	20.0	2	84	0	53	45	2	2	50	1.28
11376010--11376037	9	3.1	9	100	0	56	25	53	0	21	1.46
11376165--11376270	33	3.1	33	89	6	142	23	48	10	17	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11376314--11376388	21	3.6	21	85	3	98	2	57	1	38	1.21
11376315--11376376	3	20.7	3	83	6	81	1	61	0	37	1.06
11382309--11382342	2	17.5	2	93	6	61	50	0	0	50	1.00
11382517--11382836	131	2.4	131	80	6	371	40	14	5	40	1.69
11383246--11383301	26	2.2	26	81	15	64	41	19	1	37	1.62
11387160--11387295	33	4.1	33	74	9	125	22	26	17	33	1.96
11387569--11387599	15	2.1	15	93	0	53	6	9	41	41	1.63
11388592--11388636	24	1.9	24	86	4	65	64	0	0	35	0.94
11389385--11389421	15	2.4	16	90	4	58	56	0	27	16	1.40
11390321--11390371	24	2.1	24	100	0	102	41	31	7	19	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120