genome.fa.s146.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  93  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12441503--12441615	12	8.5	13	69	24	58	54	1	1	41	1.21
12442464--12442507	22	2.0	22	86	0	61	72	11	6	9	1.27
12449406--12449442	11	3.5	11	85	14	60	32	0	0	67	0.91
12450004--12450038	12	2.9	12	86	0	52	2	0	8	88	0.61
12450346--12450386	19	2.1	20	86	4	57	24	2	0	73	0.96
12450663--12450726	22	2.9	22	73	13	69	56	0	0	43	0.99
12460648--12460701	23	2.3	23	81	6	65	40	0	0	59	0.98
12463276--12463314	15	2.6	15	84	12	53	38	0	2	58	1.12
12464142--12464167	2	13.0	2	100	0	52	50	0	0	50	1.00
12468012--12468090	38	2.1	38	90	2	124	40	0	16	43	1.48
12475178--12475213	19	1.9	18	88	5	54	75	0	0	25	0.81
12475486--12475602	30	4.1	27	82	7	108	51	27	0	20	1.53
12475508--12475602	14	6.7	14	72	14	61	52	26	1	20	1.53
12475508--12475640	30	4.7	29	80	8	141	50	27	0	21	1.54
12475485--12475589	43	2.4	44	81	7	117	52	27	0	20	1.47
12475520--12475640	58	2.1	58	85	3	163	49	27	0	22	1.55
12475565--12475640	14	5.3	14	69	17	57	48	28	1	21	1.58
12475633--12475690	30	2.0	29	86	10	82	43	29	1	25	1.65
12475704--12475737	16	2.1	16	88	0	50	55	20	0	23	1.43
12475667--12475766	52	1.9	53	87	6	150	50	26	0	24	1.50
12478953--12479070	35	3.4	35	68	6	89	21	23	10	44	1.82
12478929--12479241	69	4.5	69	79	6	276	21	22	10	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12479039--12479199	34	4.6	34	67	11	112	22	21	9	46	1.79
12479056--12479287	103	2.2	104	81	6	247	21	18	9	49	1.76
12478971--12479219	138	1.8	138	81	3	313	22	22	9	45	1.81
12479249--12479443	70	2.8	68	72	10	169	22	18	9	48	1.77
12479364--12479513	34	4.4	34	77	3	140	18	16	10	54	1.69
12479351--12479532	69	2.6	69	84	0	211	20	18	9	52	1.72
12479351--12479532	34	5.2	35	74	4	118	20	18	9	52	1.72
12479663--12479712	13	3.9	12	84	10	55	80	12	0	8	0.92
12479953--12479982	15	2.1	15	93	6	53	80	0	0	20	0.72
12481095--12481134	11	3.5	11	89	6	53	22	2	0	75	0.93
12481209--12481264	3	18.3	3	85	3	67	64	5	0	30	1.16
12481480--12481562	36	2.3	37	85	12	118	50	4	2	42	1.36
12481666--12481726	14	4.2	14	79	8	68	52	24	0	22	1.47
12481673--12481814	30	4.8	30	78	10	150	47	29	1	21	1.59
12481672--12481810	58	2.4	59	82	11	160	46	30	1	21	1.60
12481673--12481858	14	12.7	14	70	13	97	48	30	1	19	1.56
12481672--12481828	58	2.7	56	79	9	154	48	29	1	21	1.58
12481761--12481858	44	2.2	44	83	7	119	51	29	1	18	1.53
12481923--12481992	8	9.2	8	68	22	53	52	27	0	20	1.46
12481927--12481969	14	2.9	14	83	12	59	53	30	0	16	1.43
12481927--12481970	16	2.9	16	90	6	65	54	29	0	15	1.42
12491499--12491534	11	3.6	10	85	14	56	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12496516--12496548	6	5.7	6	96	3	59	0	12	0	87	0.53
12500392--12500425	10	3.4	10	91	0	50	35	0	11	52	1.38
12500581--12500648	35	2.0	34	94	2	118	35	8	2	52	1.47
12504784--12504853	29	2.4	29	83	9	90	52	4	7	35	1.48
12507840--12507865	2	13.0	2	100	0	52	50	0	0	50	1.00
12510791--12510845	26	2.1	28	83	10	71	65	0	0	34	0.93
12519299--12519328	2	15.5	2	93	6	53	50	0	0	50	1.00
12520989--12521080	47	1.9	47	89	8	141	55	4	0	40	1.20
12522243--12522481	102	2.3	103	82	3	268	40	9	11	38	1.75
12522290--12522525	103	2.3	103	79	7	241	37	10	13	38	1.80
12523163--12523187	2	12.5	2	100	0	50	48	0	0	52	1.00
12528120--12528191	33	2.2	33	82	2	83	29	26	18	26	1.98
12534764--12534792	2	14.5	2	100	0	58	51	48	0	0	1.00
12541692--12541757	7	8.7	7	77	9	51	21	3	1	74	1.04
12541704--12541741	18	2.2	18	90	9	62	26	0	2	71	1.00
12543544--12543619	34	2.3	33	79	6	91	46	0	5	48	1.24
12544765--12544792	2	14.0	2	100	0	56	50	0	0	50	1.00
12545625--12545716	31	3.0	31	75	7	98	47	0	0	52	1.00
12545625--12545667	15	2.8	15	80	13	52	44	0	0	55	0.99
12547352--12547395	19	2.3	19	84	0	61	25	0	9	65	1.21
12552312--12552355	1	44.0	1	81	0	52	90	2	6	0	0.51
12552302--12552355	10	5.5	10	82	8	58	87	1	7	3	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12552312--12552355	14	3.1	14	93	6	79	90	2	6	0	0.51
12552312--12552358	24	1.9	24	91	4	76	89	2	8	0	0.57
12552302--12552361	12	5.0	12	76	15	52	85	1	10	3	0.79
12553476--12553543	20	3.4	20	93	0	109	27	19	16	36	1.93
12553809--12553874	22	3.0	22	70	12	53	33	4	13	48	1.63
12554083--12554217	17	8.0	17	73	4	94	34	17	11	37	1.85
12554168--12554244	34	2.3	34	90	4	120	32	18	15	33	1.92
12554179--12554244	17	3.9	17	74	7	71	30	19	16	33	1.94
12554358--12554405	17	2.8	17	78	6	53	37	14	10	37	1.81
12554581--12554618	18	2.1	18	85	9	51	36	15	10	36	1.82
12554822--12555118	85	3.5	85	76	9	273	25	14	15	44	1.84
12554820--12555118	128	2.3	128	79	8	322	25	14	15	44	1.84
12554820--12555173	43	8.2	43	77	10	197	25	12	15	46	1.81
12561552--12561604	23	2.3	23	81	12	63	13	0	9	77	0.99
12561552--12561599	20	2.5	19	83	13	62	14	0	10	75	1.06
12561952--12561992	3	13.7	3	89	0	64	29	0	4	65	1.13
12562944--12563000	3	19.0	3	100	0	114	33	0	0	66	0.92
12563378--12563436	3	19.7	3	100	0	118	32	0	0	67	0.91
12564079--12564113	3	11.7	3	93	0	61	2	0	28	68	1.04
12564076--12564116	9	4.6	9	93	0	64	7	0	24	68	1.15
12564112--12564155	3	14.7	3	100	0	88	31	0	0	68	0.90
12571124--12571177	19	2.8	19	94	0	90	31	9	20	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12573503--12573540	19	2.0	19	94	0	67	36	34	7	21	1.82
12574074--12574127	25	2.3	24	82	17	69	31	5	0	62	1.18
12574821--12574852	15	2.1	15	94	0	55	31	3	6	59	1.38
12577522--12577566	14	2.8	17	77	22	60	40	0	0	60	0.97
12577523--12577565	15	2.9	15	86	10	61	39	0	0	60	0.97
12578437--12578471	3	11.7	3	100	0	70	31	0	0	68	0.90
12580350--12580412	25	2.6	25	82	2	65	52	0	4	42	1.22
12581661--12581690	13	2.3	13	94	0	51	23	3	26	46	1.68
12583548--12583694	34	4.3	34	65	13	95	45	12	21	21	1.83
12583503--12584171	202	3.3	202	84	5	850	45	13	19	21	1.84
12583847--12583999	34	4.5	34	70	12	107	47	11	19	21	1.81
12584045--12584129	34	2.5	34	84	5	100	47	12	21	18	1.82
12583482--12584168	102	6.8	102	86	2	817	45	13	19	21	1.84
12584238--12584438	35	5.6	35	67	11	118	46	14	18	19	1.84
12584215--12584440	73	3.1	74	84	8	311	47	13	18	20	1.82
12585425--12585488	8	7.4	9	78	16	57	9	7	3	79	1.02
12591709--12592237	266	2.0	266	89	0	799	31	16	17	34	1.93
12597146--12597196	3	17.0	3	100	0	102	33	0	0	66	0.92
12598569--12598608	17	2.3	17	82	4	53	62	25	0	12	1.30
12599993--12600035	21	2.0	21	90	0	68	41	9	0	48	1.35
12605302--12605335	2	17.0	2	93	0	59	0	0	52	47	1.00
12607982--12608027	24	1.9	24	95	0	83	32	13	23	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12608987--12609019	2	16.5	2	93	0	57	54	0	0	45	0.99
12610495--12610529	6	5.8	6	89	0	52	17	65	2	14	1.38
12613650--12613691	19	2.2	19	83	8	50	45	4	2	47	1.36
12613763--12613817	25	2.5	22	76	21	60	41	5	0	52	1.24
12613900--12613968	6	11.0	6	75	9	66	26	1	0	72	0.93
12613891--12613968	39	2.0	39	87	2	113	29	1	1	67	1.06
12614652--12614713	21	3.0	21	79	11	67	74	1	9	14	1.15
12614874--12614923	18	2.5	21	75	24	63	42	0	0	58	0.98
12614885--12614921	17	2.1	19	90	10	60	37	0	0	62	0.96
12615334--12615381	24	2.0	24	84	8	62	66	2	4	27	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120