genome.fa.s146.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  70  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8368651--8368704	25	2.2	25	86	3	74	22	16	16	44	1.86
8372800--8372836	17	2.1	19	85	14	53	18	5	13	62	1.50
8375570--8375600	15	2.1	15	100	0	62	22	6	25	45	1.76
8379944--8379989	3	15.3	3	95	0	83	30	0	2	67	1.03
8380744--8380771	14	2.0	14	100	0	56	57	14	14	14	1.66
8381045--8381073	14	2.0	15	93	6	51	17	0	0	82	0.66
8381261--8381308	24	2.0	24	83	4	60	6	12	16	64	1.46
8381314--8381384	27	2.6	27	100	0	142	18	14	2	64	1.40
8388820--8388861	20	2.1	20	95	0	75	64	0	16	19	1.30
8393428--8393477	22	2.3	22	82	6	57	70	0	12	18	1.17
8403311--8403338	14	2.0	14	100	0	56	42	0	7	50	1.30
8405429--8405496	34	2.0	34	91	0	109	23	16	13	47	1.81
8405905--8405963	31	1.9	31	89	0	91	44	0	8	47	1.33
8410467--8410515	19	2.7	18	87	3	53	24	6	4	65	1.33
8410502--8410635	13	10.1	13	72	20	75	20	11	0	67	1.22
8410502--8410578	22	3.3	22	72	13	82	24	9	0	66	1.21
8410485--8410594	26	4.5	24	76	15	111	23	9	0	67	1.19
8410483--8410586	48	2.2	46	93	6	183	25	8	0	66	1.20
8410508--8410631	16	8.1	15	71	18	60	20	12	0	66	1.23
8411664--8412058	160	2.5	158	78	6	345	28	13	13	44	1.82
8411929--8412064	55	2.5	55	83	0	173	30	11	12	44	1.78
8412332--8412369	15	2.5	15	91	0	58	60	7	7	23	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8413651--8414518	436	2.0	431	89	2	1326	36	16	9	37	1.81
8420784--8420956	63	2.7	63	72	13	165	32	13	18	35	1.90
8420783--8420986	64	3.2	63	72	12	184	33	14	16	35	1.90
8420784--8421016	127	1.8	127	84	2	317	34	12	17	35	1.88
8421021--8421133	57	2.0	55	84	3	145	29	17	13	39	1.88
8421116--8421214	48	2.1	48	84	3	128	30	11	20	38	1.87
8421252--8421294	22	1.9	22	86	13	61	51	16	4	27	1.64
8423351--8423400	20	2.5	20	78	15	57	24	12	18	46	1.82
8427946--8427994	23	2.2	22	85	10	64	34	0	4	61	1.15
8431380--8431426	20	2.3	21	79	17	55	44	12	4	38	1.62
8432139--8432194	25	2.3	25	90	3	96	62	5	1	30	1.28
8437223--8437294	27	2.7	27	88	0	99	41	26	12	19	1.87
8438321--8438357	18	2.1	18	89	0	56	29	0	13	56	1.37
8443694--8443721	14	2.0	14	100	0	56	28	7	21	42	1.79
8444458--8444505	20	2.4	20	100	0	96	39	8	6	45	1.59
8445690--8445731	17	2.4	18	80	4	50	23	2	2	71	1.10
8447714--8447980	105	2.5	104	84	7	333	39	4	12	43	1.63
8449329--8449364	18	2.0	18	88	0	54	58	2	8	30	1.42
8454242--8454386	3	53.0	3	74	17	129	35	2	2	60	1.23
8454242--8454386	8	17.4	8	75	16	93	35	2	2	60	1.23
8454242--8454386	5	26.5	6	81	10	129	35	2	2	60	1.23
8454242--8454386	20	7.2	20	81	13	149	35	2	2	60	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8459941--8460032	6	14.7	6	75	20	73	83	4	9	2	0.86
8459961--8460032	19	3.8	19	85	8	87	84	4	9	1	0.81
8459942--8460013	19	3.5	19	85	12	81	83	5	8	2	0.89
8459940--8460032	25	3.7	24	84	12	109	83	4	9	2	0.85
8459940--8460032	11	8.4	11	70	18	68	83	4	9	2	0.85
8459942--8460032	44	2.1	43	87	6	130	83	4	9	2	0.87
8459940--8460032	1	93.0	1	72	0	51	83	4	9	2	0.85
8464183--8464415	115	2.0	115	94	0	403	32	15	13	38	1.87
8466094--8466139	23	2.0	22	84	12	58	67	2	0	30	1.03
8466290--8466322	16	2.1	16	100	0	66	51	0	0	48	1.00
8465133--8466352	612	2.0	612	91	2	1986	47	9	4	39	1.54
8478476--8478640	80	2.1	80	92	0	276	44	11	10	32	1.75
8483496--8483526	7	4.4	7	95	0	53	83	3	0	12	0.75
8484448--8484485	18	2.2	18	86	13	53	63	0	18	18	1.32
8484673--8484737	31	2.0	33	82	5	80	64	1	15	18	1.37
8485241--8485300	30	2.0	30	90	0	93	53	5	3	38	1.39
8494131--8494225	40	2.4	39	86	10	131	47	17	2	32	1.60
8494421--8494460	21	2.0	21	90	5	64	55	10	5	30	1.54
8497283--8497334	7	7.1	7	80	8	59	82	3	13	0	0.80
8498309--8498357	22	2.2	22	79	13	57	22	4	2	71	1.13
8498385--8498434	3	16.7	3	91	8	84	36	0	0	64	0.94
8498497--8498525	3	9.7	3	100	0	58	34	0	31	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8500269--8500298	4	7.5	4	92	0	51	20	0	3	76	0.92
8500269--8500301	12	2.8	12	95	0	57	18	0	6	75	1.00
8504738--8504875	70	2.0	71	91	1	224	36	7	24	30	1.84
8510257--8510316	25	2.4	26	81	13	72	78	5	3	13	1.04
8510218--8510288	18	3.9	18	73	14	74	71	11	1	15	1.20
8510260--8510311	21	2.5	20	78	12	52	80	5	1	11	0.96
8510297--8510394	51	1.9	51	83	6	126	61	11	14	13	1.58
8511432--8511622	71	2.7	70	82	8	194	19	16	12	50	1.77
8511405--8511622	106	2.0	106	81	9	248	19	16	12	51	1.75
8511470--8511920	71	6.3	69	76	6	350	20	18	13	47	1.82
8511576--8511909	144	2.3	144	92	2	566	21	19	13	46	1.83
8511498--8512447	35	26.6	35	70	8	209	19	18	12	49	1.79
8511576--8511950	72	5.2	71	77	5	330	20	18	13	46	1.83
8511858--8512350	144	3.4	142	75	8	385	18	18	12	50	1.77
8512262--8512343	36	2.3	36	83	8	96	18	18	7	56	1.64
8512178--8512350	72	2.4	74	75	12	180	19	19	9	50	1.75
8512563--8512594	14	2.2	15	94	5	57	78	15	0	6	0.95
8516027--8516070	7	6.4	7	82	15	56	11	13	0	75	1.06
8516018--8516070	27	2.0	27	92	0	88	9	15	0	75	1.04
8516031--8516069	20	2.0	19	90	5	60	10	10	0	79	0.94
8518164--8518208	18	2.5	18	85	0	63	17	2	37	42	1.62
8518198--8518294	30	3.2	29	74	10	88	22	3	31	42	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8518212--8518331	6	19.7	6	74	8	91	21	2	30	45	1.65
8518249--8518312	19	3.5	19	87	6	87	17	3	32	46	1.63
8518245--8518347	19	5.6	18	81	12	54	17	1	33	47	1.59
8518584--8518615	17	1.9	16	93	6	55	15	0	31	53	1.43
8525802--8525828	14	1.9	14	100	0	54	29	3	0	66	1.09
8526479--8526511	3	11.0	3	100	0	66	33	0	0	66	0.92
8528553--8528592	16	2.5	16	100	0	80	22	20	20	37	1.94
8528614--8528694	40	2.0	40	90	0	126	32	18	20	28	1.97
8528569--8528744	91	1.9	91	81	4	212	33	18	15	31	1.93
8534356--8534393	18	2.1	18	100	0	76	42	15	13	28	1.85
8538798--8538879	12	7.1	11	74	19	60	18	4	1	75	1.04
8538796--8538877	23	3.5	22	75	11	65	18	4	1	75	1.04
8539007--8539061	19	2.8	19	75	5	56	70	1	0	27	0.97
8539006--8539068	22	3.1	20	76	17	58	66	1	0	31	1.01
8539027--8539068	22	2.0	21	90	4	66	71	2	0	26	0.98
8541507--8541558	16	3.1	16	81	10	59	26	9	5	57	1.53
8541514--8541552	18	2.2	18	95	0	69	28	7	5	58	1.47
8542886--8542920	3	11.7	3	100	0	70	65	0	0	34	0.93
8543296--8543333	19	2.1	19	95	5	69	42	0	0	57	0.98
8544355--8544387	16	2.1	16	100	0	66	24	12	0	63	1.28
8544511--8544558	19	2.3	22	72	24	57	22	41	6	29	1.78
8544523--8544561	19	2.1	19	100	0	78	20	38	5	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8544845--8545513	336	2.0	333	93	1	1142	27	27	11	33	1.91
8546924--8547129	112	1.8	112	87	6	310	44	1	14	38	1.56
8554504--8554535	16	2.0	16	100	0	64	37	12	18	31	1.88
8555974--8556015	22	1.9	22	95	0	75	47	9	26	16	1.77
8556468--8556749	144	2.0	143	83	6	365	40	11	13	34	1.81
8557427--8557535	45	2.4	46	87	6	168	45	19	4	30	1.70
8557923--8558013	40	2.3	40	82	3	103	35	15	15	34	1.89
8558051--8558267	84	2.6	84	78	8	226	39	12	16	32	1.85
8561198--8561335	75	1.9	73	84	6	188	16	7	19	56	1.63
8565221--8565259	18	2.2	18	85	0	51	23	33	0	43	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120