genome.fa.s146.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  42  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4744408--4744460	26	2.0	26	88	0	79	28	22	22	26	1.99
4745303--4745355	26	2.0	26	85	0	70	30	16	22	30	1.96
4745278--4745884	185	3.3	183	81	5	693	22	29	27	20	1.99
4745672--4745730	26	2.2	27	87	6	93	27	22	22	28	1.99
4746554--4746606	26	2.0	26	96	0	97	28	18	26	26	1.98
4747275--4747308	15	2.3	15	100	0	68	17	47	23	11	1.81
4747429--4747481	26	2.0	26	92	0	88	28	22	24	24	2.00
4748326--4748378	26	2.0	26	96	0	97	28	20	24	26	1.99
4747182--4749200	897	2.2	895	87	4	2887	25	25	24	25	2.00
4749925--4749977	26	2.0	26	92	0	88	28	18	24	28	1.98
4749210--4751535	903	2.6	895	88	2	3369	26	22	24	27	2.00
4752332--4752383	26	2.0	26	84	0	68	26	23	23	26	2.00
4753232--4753284	26	2.0	26	100	0	106	26	20	26	26	1.99
4755681--4756094	185	2.2	185	82	4	478	24	26	27	21	1.99
4758572--4758624	26	2.0	26	92	0	88	28	18	24	28	1.98
4759471--4759522	26	2.0	27	92	3	88	30	17	25	26	1.97
4760362--4760414	26	2.0	26	92	0	88	26	18	24	30	1.98
4761261--4761311	26	2.0	26	92	0	84	33	15	23	27	1.95
4755864--4764879	900	10.1	898	86	2	11888	25	24	24	25	2.00
4762158--4762210	26	2.0	26	92	0	88	28	18	24	28	1.98
4763067--4763117	26	2.0	26	92	0	84	27	19	27	25	1.99
4765868--4765920	26	2.0	26	96	0	97	30	18	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4766762--4766812	26	2.0	26	96	0	93	25	15	29	29	1.96
4767666--4767717	26	2.0	26	92	0	86	26	15	26	30	1.96
4768560--4768610	26	2.0	26	96	0	93	25	15	29	29	1.96
4769463--4769514	26	2.0	26	92	0	86	26	15	26	30	1.96
4770342--4770394	26	2.0	26	88	0	79	28	16	24	30	1.97
4771948--4772000	26	2.0	26	100	0	106	26	20	26	26	1.99
4770368--4779156	902	9.8	890	85	3	11085	25	24	24	25	2.00
4772843--4772895	26	2.0	26	96	0	97	26	22	24	26	2.00
4774636--4774688	26	2.0	26	92	7	90	28	16	26	28	1.97
4775539--4775591	26	2.0	26	96	0	97	28	20	24	26	1.99
4776436--4776487	26	2.0	26	96	0	95	28	19	25	26	1.98
4770368--4790091	903	21.6	899	73	11	12553	25	23	24	25	2.00
4777339--4777390	26	2.0	26	96	0	95	28	17	26	26	1.97
4778396--4780588	708	3.1	707	91	2	3403	25	23	24	26	2.00
4780563--4780614	26	2.0	26	92	3	88	26	21	25	26	1.99
4783956--4784008	26	2.0	26	89	7	81	30	20	20	28	1.98
4786559--4786611	26	2.0	26	96	0	97	26	18	26	28	1.98
4787437--4787486	25	2.0	25	92	0	82	28	16	26	30	1.96
4789330--4789382	26	2.0	26	92	0	88	26	22	26	24	2.00
4790103--4790155	26	2.0	26	92	0	88	26	18	24	30	1.98
4790095--4792044	862	2.3	857	91	2	3114	24	23	25	26	2.00
4793574--4793626	26	2.0	26	88	0	79	26	16	24	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4794469--4794521	26	2.0	26	92	0	88	28	18	24	28	1.98
4793504--4797181	895	4.1	896	83	5	4668	25	24	24	25	2.00
4795376--4795426	26	2.0	26	96	0	93	27	21	27	23	1.99
4797236--4797555	158	2.0	162	82	4	398	19	29	31	19	1.96
4798160--4798212	26	2.0	26	92	0	88	30	18	20	30	1.97
4799060--4799109	26	1.9	26	95	0	91	26	16	32	26	1.96
4797305--4800898	897	4.0	900	85	4	4542	25	24	24	25	2.00
4799963--4800014	26	2.0	26	92	0	86	26	15	26	30	1.96
4802448--4802500	26	2.0	26	100	0	106	26	20	26	26	1.99
4803343--4803395	26	2.0	26	100	0	106	26	20	26	26	1.99
4804242--4804294	26	2.0	26	92	7	90	28	16	26	28	1.97
4805147--4805199	26	2.0	26	96	0	97	28	20	24	26	1.99
4800868--4811299	891	11.7	898	85	4	13087	25	23	24	25	2.00
4806043--4806094	26	2.0	26	92	0	86	28	19	23	28	1.98
4806943--4806994	26	2.0	26	96	0	95	28	17	26	26	1.97
4807846--4807896	26	2.0	26	84	0	66	29	19	21	29	1.98
4809603--4809655	26	2.0	26	88	0	79	28	16	24	30	1.97
4810481--4810533	26	2.0	26	88	0	79	28	20	24	26	1.99
4812084--4812136	26	2.0	26	88	0	79	22	18	28	30	1.98
4811822--4812730	475	1.9	476	87	1	1340	22	28	28	20	1.99
4813464--4813516	26	2.0	26	96	0	97	28	20	24	26	1.99
4812299--4816995	862	5.3	860	85	5	5563	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4818044--4818095	26	2.0	26	92	3	88	26	19	26	26	1.99
4818037--4818095	26	2.4	25	86	8	86	25	20	27	27	1.99
4818885--4818935	26	2.0	26	100	0	102	27	15	27	29	1.96
4819785--4819837	26	2.0	26	96	0	97	28	22	22	26	1.99
4820683--4820735	26	2.0	26	92	0	88	26	20	26	26	1.99
4823247--4823297	26	2.0	26	96	0	93	27	19	25	27	1.99
4824129--4824181	26	2.0	26	96	0	97	26	18	26	28	1.98
4824983--4825033	26	2.0	26	96	0	93	29	17	27	25	1.98
4825883--4825933	26	2.0	26	96	0	93	27	17	23	31	1.97
4826782--4826834	26	2.0	26	100	0	106	26	20	26	26	1.99
4828391--4828443	26	2.0	26	100	0	106	26	20	26	26	1.99
4829289--4829363	26	2.9	26	97	0	141	24	17	28	30	1.97
4831112--4831164	26	2.0	26	92	0	88	28	15	24	32	1.95
4827530--4832245	904	5.2	900	83	5	5565	25	24	24	25	2.00
4832017--4832071	26	2.1	26	89	0	83	27	20	27	25	1.99
4833440--4833492	26	2.0	26	96	0	97	26	18	26	28	1.98
4832719--4839289	878	7.4	878	84	6	8030	25	24	24	25	2.00
4836120--4836172	26	2.0	26	92	0	88	28	18	22	30	1.98
4837874--4837929	26	2.2	26	100	0	112	26	19	25	28	1.99
4838765--4838817	26	2.0	26	92	0	88	30	18	26	24	1.98
4839572--4839624	26	2.0	26	92	0	88	28	18	24	28	1.98
4840110--4840162	26	2.0	26	96	0	97	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4839290--4840749	538	2.7	538	96	0	2607	25	27	24	22	2.00
4840648--4840700	26	2.0	26	88	0	79	30	16	26	26	1.97
4840309--4842662	885	2.6	891	85	4	3151	25	25	24	25	2.00
4843247--4843296	26	1.9	26	95	0	91	30	16	24	30	1.96
4844149--4844198	26	1.9	26	95	0	91	30	16	24	30	1.96
4842736--4853231	875	11.8	899	86	4	12685	25	23	24	25	2.00
4849417--4849469	26	2.0	26	92	0	88	26	16	26	30	1.97
4850302--4850354	26	2.0	26	96	0	97	26	18	26	28	1.98
4851199--4851276	26	3.0	26	87	10	124	28	19	25	26	1.99
4853019--4853072	27	2.0	28	92	3	92	27	18	22	31	1.97
4853021--4853079	27	2.1	28	87	3	84	30	20	22	27	1.98
4853207--4853257	26	2.0	26	88	0	75	31	15	25	27	1.96
4852995--4853406	185	2.2	186	85	3	544	23	26	28	22	1.99
4855362--4855414	26	2.0	26	92	0	88	26	16	26	30	1.97
4854589--4857179	874	2.9	875	86	3	3346	24	24	24	26	2.00
4857980--4858032	26	2.0	26	96	0	97	26	18	26	28	1.98
4858877--4858929	26	2.0	26	96	0	97	26	18	26	28	1.98
4857194--4859660	896	2.7	893	87	2	3529	24	23	24	26	2.00
4859792--4859924	21	6.6	20	68	24	75	30	2	2	65	1.17
4859777--4859924	42	3.7	37	70	24	99	29	2	2	66	1.17
4859788--4859911	17	7.5	18	69	19	58	29	2	2	65	1.18
4860518--4860567	20	2.5	20	86	0	73	44	26	14	16	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4860963--4861002	17	2.4	16	84	8	53	22	5	0	72	1.04
4860989--4861039	17	2.9	18	78	21	63	13	3	1	80	0.94
4861054--4861290	58	4.0	57	89	6	357	45	8	11	34	1.71
4861054--4861290	59	4.0	60	90	4	365	45	8	11	34	1.71
4865157--4865213	11	5.1	11	78	6	53	75	0	19	5	0.99
4865145--4865230	22	3.9	21	77	15	84	73	0	19	6	1.06
4865184--4865235	17	3.1	17	80	5	52	75	0	21	3	0.97
4866478--4866899	41	10.1	41	91	2	673	22	16	24	36	1.94
4866478--4866899	83	5.1	84	94	3	730	22	16	24	36	1.94
4866906--4866954	1	49.0	1	79	0	53	89	10	0	0	0.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120