genome.fa.s146.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  83  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10637375--10637455	20	4.1	21	75	22	86	38	3	7	50	1.48
10637395--10637474	37	2.1	38	88	9	119	36	3	6	53	1.44
10637369--10637485	57	2.1	57	80	3	128	35	3	7	52	1.47
10637603--10637638	17	2.1	17	89	5	54	30	5	11	52	1.59
10637602--10637714	39	2.9	39	72	23	105	31	7	9	50	1.64
10637607--10637714	20	5.7	19	72	27	88	31	7	10	50	1.63
10637583--10637751	57	3.1	53	77	15	161	30	6	10	52	1.60
10639089--10639154	34	1.9	34	93	0	114	48	15	15	21	1.81
10641300--10641359	29	2.0	30	93	3	104	46	11	6	35	1.67
10642075--10642109	18	2.0	18	88	5	54	11	20	14	54	1.70
10642073--10642243	84	2.0	84	82	2	209	16	24	14	44	1.85
10643042--10643078	16	2.4	15	86	8	56	48	0	0	51	1.00
10644712--10644741	15	2.0	15	100	0	60	40	13	0	46	1.43
10644845--10644875	2	15.5	2	93	0	53	51	0	0	48	1.00
10645780--10645828	25	2.0	25	84	4	64	16	12	4	67	1.37
10651452--10651532	25	3.2	25	61	19	58	38	4	16	40	1.70
10652033--10652115	42	2.0	42	81	9	98	37	13	7	42	1.72
10654970--10655013	20	2.2	20	83	0	52	31	18	6	43	1.76
10663751--10663813	3	21.0	3	96	0	117	33	1	0	65	1.03
10663937--10664041	54	1.9	55	82	3	131	34	16	11	38	1.84
10665496--10665563	3	22.7	3	96	0	55	67	13	0	19	1.22
10667930--10667984	24	2.2	25	90	6	94	30	0	9	60	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10668951--10669022	26	2.8	26	82	14	78	51	4	4	40	1.40
10668950--10669014	13	4.8	14	81	10	64	52	3	4	40	1.38
10669914--10670215	155	1.9	155	89	0	460	30	18	12	37	1.89
10675506--10675557	8	6.4	8	78	12	61	19	0	1	78	0.84
10675504--10675557	9	6.4	9	78	20	55	20	0	1	77	0.86
10675504--10675557	26	2.2	26	90	6	85	20	0	1	77	0.86
10675507--10675563	16	3.7	15	80	13	55	19	0	1	78	0.83
10675517--10675565	14	2.9	17	85	14	59	18	0	2	79	0.83
10675761--10675804	8	5.0	8	80	20	52	79	4	0	15	0.89
10676820--10677294	42	11.5	41	84	2	515	42	20	12	24	1.87
10676803--10677294	84	5.9	84	85	4	590	42	20	12	24	1.87
10678732--10678807	8	9.0	9	79	20	85	9	10	0	80	0.91
10678730--10678807	17	4.7	16	82	9	95	8	10	0	80	0.90
10678733--10678804	33	2.2	33	90	9	112	8	9	0	81	0.86
10688661--10688711	24	2.1	24	89	7	77	31	0	9	58	1.30
10689220--10689258	10	3.7	11	83	13	55	30	25	0	43	1.55
10689715--10689828	3	39.3	3	84	6	65	52	0	12	35	1.39
10689752--10689867	8	13.9	8	72	16	60	53	2	6	37	1.39
10689760--10689813	11	4.8	11	81	4	72	57	0	7	35	1.27
10689740--10689799	31	1.9	31	100	0	120	51	0	13	35	1.41
10689715--10689828	34	3.3	35	82	8	135	52	0	12	35	1.39
10694455--10694524	34	2.1	34	100	0	140	35	17	15	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10698498--10698797	22	13.8	22	69	9	96	36	8	5	50	1.54
10698498--10698661	44	3.8	44	71	11	124	34	8	4	51	1.54
10698580--10698667	43	2.0	44	84	2	115	34	10	6	48	1.63
10698746--10698806	22	2.8	21	78	9	59	39	8	0	52	1.31
10698838--10698904	22	3.0	21	78	4	62	40	8	2	47	1.50
10698967--10699037	22	3.2	22	72	7	63	33	2	7	56	1.41
10699236--10699279	21	2.1	21	100	0	88	38	9	13	38	1.77
10699637--10699667	15	2.1	15	100	0	62	19	12	12	54	1.70
10700369--10700403	17	2.1	17	100	0	70	48	11	0	40	1.39
10701148--10701187	14	2.9	14	85	11	55	42	2	0	55	1.13
10701147--10701193	13	3.4	14	80	11	53	42	2	2	53	1.25
10702394--10702445	18	3.0	17	77	11	52	61	5	0	32	1.20
10702425--10702457	16	2.1	16	94	0	57	60	0	0	39	0.97
10702440--10702473	13	2.8	12	91	8	52	52	0	0	47	1.00
10702766--10702826	32	1.9	32	83	12	81	26	1	4	67	1.20
10704517--10704559	2	21.5	2	80	0	50	44	2	2	51	1.27
10710078--10710246	52	3.3	50	76	11	148	42	10	11	36	1.75
10710644--10710686	21	2.0	21	82	8	52	32	0	20	46	1.51
10710742--10710767	13	2.0	13	100	0	52	23	0	23	53	1.46
10712722--10712758	3	13.0	3	83	11	51	67	2	0	29	1.04
10712767--10712839	6	11.7	6	76	13	58	78	5	4	12	1.07
10712731--10712803	12	6.5	11	72	15	51	71	6	0	21	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10712767--10712839	19	3.9	19	79	12	64	78	5	4	12	1.07
10712812--10712845	6	5.8	6	86	6	52	85	0	11	2	0.71
10712812--10712847	11	3.2	11	88	4	54	86	0	11	2	0.68
10713877--10714116	39	6.3	39	79	3	213	42	20	10	26	1.85
10713877--10714117	78	3.2	76	81	7	258	41	20	10	26	1.85
10713851--10714083	118	2.0	118	81	5	274	41	20	12	25	1.87
10714051--10714116	33	2.0	33	84	0	87	37	19	12	30	1.88
10713929--10714117	73	2.5	73	78	12	211	41	20	11	26	1.87
10714208--10714333	39	3.2	39	78	4	135	42	15	11	29	1.83
10726717--10726773	25	2.3	25	81	6	71	70	10	0	19	1.16
10726764--10726813	13	3.9	13	82	10	59	78	8	6	8	1.11
10726717--10726785	25	2.7	25	80	8	68	69	11	0	18	1.18
10731746--10731938	95	2.0	94	82	3	226	33	5	21	39	1.75
10731841--10732551	159	4.5	158	77	4	603	32	6	20	40	1.79
10733630--10733671	12	3.6	12	77	3	50	40	0	9	50	1.35
10733630--10733673	23	1.9	23	90	0	70	40	0	9	50	1.34
10733664--10733695	16	1.9	17	93	6	57	56	6	0	37	1.25
10737356--10737390	17	1.9	19	88	11	56	37	0	0	62	0.95
10739338--10739400	20	3.5	20	67	24	66	46	9	0	44	1.36
10739338--10739405	34	2.0	34	97	0	127	47	10	0	42	1.37
10741744--10741786	3	14.3	3	90	0	59	0	60	0	39	0.97
10743255--10743295	20	2.0	20	90	0	64	51	4	0	43	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10747195--10747286	44	2.1	44	97	0	175	40	11	11	35	1.79
10748128--10748283	61	2.6	59	78	12	163	38	8	10	42	1.70
10750181--10750208	12	2.3	12	100	0	56	35	0	0	64	0.94
10751425--10751457	2	16.5	2	100	0	66	48	0	0	51	1.00
10761011--10761052	22	2.0	22	95	4	77	59	2	19	19	1.49
10761784--10761829	2	23.0	2	90	0	74	45	0	4	50	1.21
10763239--10763299	23	2.7	23	76	0	68	36	13	3	47	1.59
10775094--10775122	15	1.9	15	100	0	58	24	6	0	68	1.13
10776417--10776485	23	2.9	23	82	8	77	7	27	10	55	1.60
10776687--10776724	7	5.4	7	87	9	51	73	2	0	23	0.95
10776686--10776717	13	2.4	13	94	5	55	71	0	0	28	0.86
10776975--10777228	41	6.2	41	80	6	282	45	14	16	23	1.84
10776975--10777228	82	3.1	81	83	3	314	45	14	16	23	1.84
10777655--10777710	22	2.5	22	82	5	69	35	17	7	39	1.78
10778842--10778936	19	5.1	19	79	5	86	6	13	0	80	0.90
10778842--10778936	9	10.1	9	79	7	91	6	13	0	80	0.90
10778855--10778951	48	2.0	47	84	5	124	7	18	0	74	1.04
10783891--10783990	51	2.0	51	87	0	146	47	8	19	26	1.76
10786257--10786301	20	2.1	22	88	8	67	57	15	0	26	1.38
10786595--10786670	7	10.4	7	78	10	55	75	2	2	19	1.05
10786625--10786662	12	2.9	13	88	7	51	71	0	0	28	0.87
10786618--10786672	20	2.7	20	82	5	65	70	1	0	27	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10792099--10792143	12	3.8	12	78	0	54	57	0	40	2	1.11
10792100--10792140	21	2.0	21	90	0	64	58	0	39	2	1.11
10792099--10792143	18	2.5	18	85	0	63	57	0	40	2	1.11
10795179--10795298	63	1.9	63	83	6	154	35	11	14	38	1.82
10795545--10795951	186	2.2	184	80	6	448	33	15	12	38	1.86
10799427--10799473	23	2.0	25	83	8	62	38	0	10	51	1.37
10803791--10804071	142	2.0	142	84	7	365	35	11	16	35	1.85
10804239--10804283	23	2.0	22	86	4	63	40	2	15	42	1.59
10804572--10804629	29	2.0	29	83	6	73	56	1	1	39	1.19
10806117--10806150	15	2.2	16	89	5	52	41	0	0	58	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120