genome.fa.s146.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  16  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1743243--1743294	26	2.0	26	96	0	95	32	23	17	26	1.96
1743742--1743949	45	4.6	45	74	4	168	19	32	31	16	1.95
1743752--1743945	90	2.2	90	80	1	210	20	33	30	15	1.94
1744882--1744934	26	2.0	26	88	0	79	30	28	16	24	1.97
1745841--1745893	26	2.0	26	88	0	79	26	28	20	24	1.99
1746196--1746247	25	2.0	26	92	3	88	28	23	17	30	1.97
1746890--1746914	13	1.9	13	100	0	50	24	36	16	24	1.94
1747049--1747293	136	1.8	136	84	0	337	19	27	27	25	1.99
1747853--1747905	26	2.0	26	88	0	79	28	26	18	26	1.98
1747738--1748616	354	2.5	354	79	6	920	20	26	28	24	1.99
1748561--1748613	26	2.0	26	96	0	97	26	24	20	28	1.99
1749081--1749212	45	2.9	44	78	2	129	18	30	31	20	1.96
1750918--1751063	45	3.2	45	83	3	159	20	30	30	18	1.96
1750889--1751075	45	4.2	45	79	2	126	22	31	28	17	1.96
1750912--1751075	90	1.8	90	82	0	211	21	30	29	17	1.97
1757927--1757979	26	2.0	26	88	0	79	28	26	18	26	1.98
1758281--1758333	26	2.0	26	92	0	88	28	24	18	28	1.98
1759331--1759383	26	2.0	26	92	0	88	30	24	18	26	1.98
1760922--1760974	26	2.0	26	88	0	79	28	26	18	26	1.98
1761278--1761330	26	2.0	26	92	0	88	30	22	16	30	1.96
1762527--1762842	170	1.9	170	79	5	361	22	25	29	22	1.99
1763510--1763669	45	3.6	45	80	1	160	19	31	31	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1764425--1764740	170	1.9	170	79	5	361	22	25	29	22	1.99
1765409--1765568	45	3.6	45	80	1	160	19	31	31	17	1.95
1767274--1767434	45	3.6	44	79	3	178	19	30	31	19	1.96
1767306--1767484	45	4.0	45	78	5	130	19	30	31	18	1.96
1767277--1767461	90	2.1	90	82	4	221	19	31	30	18	1.96
1768228--1768280	26	2.0	26	88	0	79	26	28	20	24	1.99
1775310--1775440	45	2.9	45	78	2	138	19	29	32	17	1.95
1775389--1775488	45	2.2	45	80	0	110	22	23	30	25	1.99
1776341--1776393	26	2.0	26	96	0	97	30	28	16	24	1.97
1776697--1776747	26	2.0	26	84	0	66	29	25	17	27	1.98
1777534--1777586	26	2.0	26	88	0	79	30	24	16	28	1.97
1778235--1778381	45	3.3	45	75	3	134	22	31	27	18	1.97
1778478--1778533	26	2.2	26	93	0	94	30	25	16	28	1.96
1778678--1778728	26	2.0	26	88	0	75	27	23	17	31	1.97
1779180--1779336	45	3.5	44	77	2	125	19	31	31	18	1.95
1777515--1779663	959	2.3	945	81	5	2425	22	27	27	22	1.99
1779440--1779492	26	2.0	26	89	7	81	30	28	16	24	1.97
1779795--1779847	26	2.0	26	96	0	97	28	26	18	26	1.98
1780302--1780447	45	3.2	45	78	0	139	19	30	32	17	1.95
1788135--1788187	26	2.0	26	92	0	88	28	28	18	24	1.98
1789741--1789792	26	2.0	26	92	0	86	26	23	19	30	1.98
1792061--1792169	45	2.4	45	85	0	137	20	33	31	15	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1793469--1793521	26	2.0	26	92	0	88	24	28	18	28	1.98
1793971--1794121	45	3.4	44	78	3	158	19	29	33	17	1.95
1793971--1794139	90	1.9	91	81	6	209	20	28	33	17	1.95
1795065--1795117	26	2.0	26	92	7	90	26	26	20	26	1.99
1795402--1795452	26	2.0	26	92	0	84	31	25	15	27	1.96
1796940--1796992	26	2.0	26	92	0	88	28	28	18	24	1.98
1797280--1797332	26	2.0	26	92	0	88	28	24	18	28	1.98
1804579--1804631	26	2.0	26	88	0	79	28	26	18	26	1.98
1804922--1804974	26	2.0	26	92	0	88	28	26	16	28	1.97
1805424--1805571	45	3.3	45	77	3	154	20	31	30	16	1.95
1806507--1806559	26	2.0	26	89	7	81	26	22	20	30	1.98
1808271--1808323	26	2.0	26	88	0	79	28	24	20	26	1.99
1810018--1810070	26	2.0	26	88	0	79	26	20	22	30	1.98
1810510--1810755	45	5.5	45	76	3	192	19	30	32	18	1.95
1810513--1810703	90	2.1	90	82	5	226	18	30	31	19	1.96
1810560--1810759	90	2.2	91	77	11	214	19	30	32	18	1.95
1811444--1811593	45	3.3	44	82	5	158	18	29	33	19	1.95
1812880--1812930	26	2.0	26	92	0	84	29	21	19	29	1.98
1813366--1813585	45	4.9	44	73	4	125	21	29	30	18	1.97
1814870--1814922	26	2.0	26	96	0	97	28	26	18	26	1.98
1815401--1815579	45	4.0	46	72	7	150	21	30	30	17	1.96
1816511--1816563	26	2.0	26	92	0	88	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1820012--1820064	26	2.0	26	85	0	70	28	20	20	30	1.98
1825997--1826049	26	2.0	26	88	0	79	30	22	18	28	1.98
1825846--1826221	197	1.9	195	82	6	474	23	25	27	23	2.00
1826983--1827035	26	2.0	26	96	0	97	22	28	20	28	1.99
1826828--1827204	196	1.9	196	80	2	443	19	27	29	23	1.98
1825387--1827355	986	2.0	985	86	3	2787	25	24	24	25	2.00
1828137--1828189	26	2.0	26	96	0	97	26	28	20	24	1.99
1829387--1829636	136	1.8	136	83	1	331	21	30	25	22	1.99
1829250--1829804	295	1.9	295	83	5	737	20	29	26	23	1.99
1829778--1829856	26	3.0	25	94	3	122	27	25	17	29	1.98
1831799--1831851	26	2.0	26	85	0	70	32	20	18	28	1.97
1832294--1832450	45	3.5	45	78	0	179	16	29	36	17	1.92
1832295--1832495	90	2.2	90	79	3	217	17	28	36	17	1.92
1833275--1833325	26	2.0	26	92	0	84	29	27	17	25	1.98
1834107--1834268	45	3.7	43	70	9	110	19	32	30	17	1.95
1835012--1835371	170	2.1	169	84	2	454	18	26	31	23	1.97
1835265--1835487	116	1.9	115	83	2	286	17	29	32	21	1.96
1837283--1837333	26	2.0	26	92	0	84	35	23	13	27	1.93
1838915--1838967	26	2.0	26	92	0	88	24	28	20	26	1.99
1839271--1839323	26	2.0	26	100	0	106	26	26	20	26	1.99
1840871--1840923	26	2.0	26	96	0	97	26	28	20	24	1.99
1841226--1841278	26	2.0	26	85	0	70	26	24	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1842650--1842796	45	3.3	44	75	9	145	21	31	31	15	1.94
1842650--1842814	90	1.8	90	81	5	208	21	30	32	16	1.95
1843718--1843796	26	3.0	26	90	3	124	31	29	15	24	1.95
1850490--1850514	13	1.9	13	100	0	50	24	36	16	24	1.94
1851380--1851432	26	2.0	26	92	0	88	28	28	18	24	1.98
1851734--1851786	26	2.0	26	88	0	79	32	20	18	28	1.97
1853675--1853727	26	2.0	26	96	0	97	26	24	20	28	1.99
1854170--1854385	90	2.4	89	82	4	238	20	29	30	18	1.97
1854168--1854384	45	4.8	45	76	5	190	20	29	30	18	1.97
1854415--1854470	23	2.4	23	100	0	112	21	41	14	23	1.89
1855403--1855434	12	2.7	12	90	0	55	34	21	31	12	1.91
1855685--1855737	26	2.0	26	92	0	88	28	24	20	26	1.99
1856198--1856248	26	2.0	26	88	7	77	31	27	13	27	1.94
1856933--1857134	45	4.5	44	74	3	154	18	27	33	20	1.96
1858064--1858116	26	2.0	26	88	0	79	28	26	18	26	1.98
1858897--1859141	45	5.4	45	74	2	170	22	28	31	18	1.97
1858942--1859133	90	2.1	90	77	1	197	22	28	30	18	1.98
1860045--1860097	26	2.0	26	85	0	70	28	28	20	22	1.99
1861948--1861998	26	2.0	26	88	0	75	27	27	17	27	1.98
1862694--1862846	45	3.4	45	72	8	132	20	28	31	19	1.97
1862644--1862846	90	2.3	90	81	5	214	20	28	31	19	1.97
1863791--1863843	26	2.0	26	92	7	90	30	26	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1863635--1864014	196	1.9	196	84	5	509	21	27	29	22	1.99
1864146--1864198	26	2.0	26	100	0	106	30	26	16	26	1.97
1864651--1864796	45	3.2	45	74	0	148	19	31	28	19	1.97
1865753--1865805	26	2.0	26	92	0	88	24	24	20	30	1.99
1866107--1866159	26	2.0	26	88	0	79	28	22	18	30	1.98
1866615--1866809	45	4.3	46	75	5	157	20	30	32	16	1.95
1867686--1867738	26	2.0	26	88	0	79	28	28	16	26	1.97
1873835--1873966	45	2.9	45	86	0	174	18	31	32	17	1.94
1874909--1874960	26	2.0	26	96	0	95	26	28	19	25	1.98
1875264--1875315	26	2.0	26	88	0	77	30	23	17	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120