genome.fa.s146.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  4  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315978--316030	26	2.0	26	96	0	97	26	24	20	28	1.99
316868--316918	26	2.0	26	88	7	77	29	27	15	27	1.96
311335--322091	890	12.1	890	85	4	12925	25	25	23	25	2.00
321321--321373	26	2.0	26	82	13	65	30	20	16	32	1.95
322065--322117	26	2.0	26	92	0	88	26	26	20	26	1.99
322930--322982	26	2.0	26	96	0	97	28	18	26	26	1.98
323357--323392	10	3.7	10	92	7	65	36	0	11	52	1.37
323359--323390	9	3.4	9	95	4	55	37	0	9	53	1.34
324562--324617	26	2.2	26	93	0	94	26	16	26	30	1.96
325458--325510	26	2.0	26	88	0	79	30	20	20	28	1.98
326349--326399	27	2.0	26	92	7	86	25	17	27	29	1.98
329913--329964	26	2.0	26	92	0	86	26	19	26	26	1.99
330797--330849	26	2.0	26	96	0	97	26	18	26	28	1.98
331696--331749	26	2.1	26	89	0	81	31	16	22	29	1.96
323737--332554	899	9.9	893	83	4	10402	25	23	24	25	2.00
333211--333263	26	2.0	26	92	0	88	28	18	24	28	1.98
335865--335920	26	2.2	26	86	0	76	26	17	21	33	1.96
336753--336805	26	2.0	26	96	0	97	26	18	26	28	1.98
332573--338401	863	6.6	887	83	6	6847	25	23	24	26	2.00
337616--337668	26	2.0	26	92	0	88	30	20	24	24	1.99
339892--339944	26	2.0	26	88	0	79	28	16	22	32	1.96
338399--344311	900	6.7	875	83	6	6912	25	23	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341627--341705	26	3.0	26	98	0	149	27	20	25	26	1.99
342544--342596	26	2.0	26	100	0	106	26	20	26	26	1.99
343445--343497	26	2.0	26	100	0	106	26	20	26	26	1.99
344471--344526	26	2.2	26	93	0	94	28	21	21	28	1.99
344825--345438	308	2.0	310	90	2	986	28	17	17	36	1.93
345684--345736	26	2.0	26	92	7	90	26	16	26	30	1.97
347003--347054	26	2.0	26	92	0	86	28	17	21	32	1.96
347735--347787	26	2.0	26	85	0	70	28	15	24	32	1.95
348258--348310	26	2.0	26	92	0	88	28	18	24	28	1.98
347651--348668	523	1.9	522	85	1	1387	23	25	27	22	2.00
349155--349205	26	2.0	26	100	0	102	29	19	23	27	1.98
349886--349937	25	2.0	26	88	3	79	30	17	25	26	1.97
350780--350832	26	2.0	26	96	0	97	26	18	26	28	1.98
353765--353817	26	2.0	26	92	0	88	28	24	18	28	1.98
355398--355450	26	2.0	26	96	0	97	26	24	20	28	1.99
357079--357131	26	2.0	26	92	0	88	26	22	20	30	1.98
357969--358021	26	2.0	26	88	0	79	26	20	20	32	1.98
358845--358900	26	2.2	26	93	0	94	28	21	19	30	1.98
356401--359617	887	3.6	887	89	3	4713	25	24	23	26	2.00
358874--360356	715	2.1	716	93	1	2544	26	23	23	26	2.00
360463--360515	26	2.0	26	100	0	106	26	26	20	26	1.99
361198--361250	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362988--363040	26	2.0	26	96	0	97	26	24	20	28	1.99
361174--363781	904	2.9	898	86	4	3714	25	25	23	25	2.00
363014--365202	708	3.1	710	90	3	3316	26	24	23	25	2.00
365306--365357	26	2.0	26	92	0	86	28	25	17	28	1.97
364641--366654	890	2.2	884	84	7	2534	26	24	22	26	2.00
366815--366871	26	2.2	26	83	0	78	31	21	19	28	1.97
366845--368267	719	2.0	714	84	6	1856	26	24	23	25	2.00
368456--368508	26	2.0	26	92	0	88	24	24	22	28	2.00
369361--369410	26	1.9	26	91	0	82	24	28	20	28	1.99
370570--370624	28	2.0	28	86	6	78	25	21	20	32	1.97
371478--371530	26	2.0	26	92	0	88	28	24	18	28	1.98
372371--372423	26	2.0	26	96	0	97	28	26	18	26	1.98
369605--376936	893	8.2	892	84	5	8982	25	24	24	25	2.00
374164--374218	26	2.0	28	82	6	69	29	23	21	25	1.99
375931--375981	26	2.0	26	100	0	102	27	27	15	29	1.96
374538--376939	903	2.7	896	87	2	3542	25	25	24	24	2.00
376825--376877	26	2.0	26	96	0	97	26	24	20	28	1.99
378457--378508	26	2.0	26	96	0	95	26	25	19	28	1.98
380998--381050	26	2.0	26	92	0	88	26	22	20	30	1.98
381891--381943	26	2.0	26	88	0	79	26	20	20	32	1.98
382780--382835	26	2.2	26	93	0	94	28	21	19	30	1.98
379674--383581	892	4.4	892	89	2	5603	25	25	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382809--384281	717	2.1	709	93	1	2480	26	23	23	26	2.00
384394--384446	26	2.0	26	100	0	106	26	26	20	26	1.99
385151--385203	26	2.0	26	96	0	97	28	26	18	26	1.98
386940--386992	26	2.0	26	96	0	97	26	24	20	28	1.99
385146--387737	904	2.9	899	86	3	3642	26	24	23	25	2.00
386973--389152	716	3.1	707	88	3	3133	26	23	23	26	2.00
389265--389316	26	2.0	26	92	0	86	28	25	17	28	1.97
388508--390601	890	2.3	892	84	5	2798	26	24	23	26	2.00
389983--391224	623	2.0	614	84	3	1634	23	24	26	25	2.00
392390--392442	26	2.0	26	92	0	88	24	24	22	28	2.00
391511--393516	901	2.2	903	90	1	3070	24	24	25	25	2.00
393226--393827	312	1.9	311	86	1	848	18	26	31	23	1.97
394504--394556	26	2.0	26	92	0	88	26	22	20	30	1.98
395402--395454	26	2.0	26	92	0	88	28	24	18	28	1.98
393537--400899	894	8.2	899	86	3	9493	25	24	24	25	2.00
396296--396348	26	2.0	26	100	0	106	30	26	16	26	1.97
398092--398144	26	2.0	26	88	0	79	28	24	22	24	2.00
399863--399913	26	2.0	26	100	0	102	27	27	15	29	1.96
398466--400958	905	2.8	890	87	1	3689	25	25	24	24	2.00
400756--400808	26	2.0	26	96	0	97	26	24	20	28	1.99
402379--402430	26	2.0	26	92	0	86	26	23	19	30	1.98
403046--403075	4	7.5	4	92	0	51	3	73	23	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403256--403308	26	2.0	26	92	0	88	28	24	18	28	1.98
404149--404201	26	2.0	26	92	0	88	28	24	18	28	1.98
402843--405441	895	2.9	893	86	4	3498	25	24	24	24	2.00
405047--405096	26	1.9	26	91	0	82	28	26	18	28	1.98
405737--405789	26	2.0	26	92	0	88	26	26	18	28	1.98
406636--406687	26	2.0	25	85	3	68	26	23	19	30	1.98
407489--407544	26	2.2	26	90	0	85	33	23	16	26	1.95
409065--409459	159	2.5	159	84	3	483	18	28	29	22	1.97
412076--412128	26	2.0	26	85	0	70	30	24	18	26	1.98
412976--413026	26	2.0	26	96	0	93	29	23	19	27	1.98
409413--427999	898	20.6	895	79	8	17211	25	24	24	25	2.00
413879--413929	26	2.0	26	96	0	93	29	21	21	27	1.99
414776--414828	26	2.0	26	92	0	88	26	24	18	30	1.98
415663--415713	26	2.0	26	96	0	93	29	21	19	29	1.98
418338--418388	26	2.0	26	92	0	84	29	23	19	27	1.98
419071--419123	26	2.0	26	89	7	81	28	26	18	26	1.98
420352--420402	26	2.0	26	96	0	93	27	25	15	31	1.96
422122--422174	26	2.0	26	92	0	88	28	24	18	28	1.98
423021--423072	26	2.0	26	96	0	95	28	26	17	26	1.97
423924--423976	26	2.0	26	96	0	97	24	22	22	30	1.99
421250--427999	894	7.6	892	86	4	8697	25	24	24	25	2.00
424818--424870	26	2.0	26	96	0	97	24	22	22	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
425713--425765	26	2.0	26	96	0	97	28	26	18	26	1.98
426584--426636	26	2.0	26	92	0	88	28	22	20	28	1.99
427460--427511	26	2.0	26	92	0	86	28	28	17	25	1.97
427404--428605	610	2.0	612	89	2	1842	26	24	23	25	2.00
429882--429934	26	2.0	26	96	0	97	28	26	18	26	1.98
427998--441537	902	15.1	900	85	4	16977	25	25	23	25	2.00
432584--432636	26	2.0	26	92	0	88	33	26	13	26	1.93
433479--433531	26	2.0	26	96	0	97	26	28	18	26	1.98
434381--434430	26	1.9	26	83	0	64	24	26	20	30	1.98
436155--436207	26	2.0	26	89	7	81	28	22	18	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120