genome.fa.s146.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  88  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11547192--11547220	13	2.3	13	94	5	51	31	0	10	58	1.31
11548323--11548359	19	1.9	19	94	0	65	35	8	16	40	1.78
11558738--11559377	119	5.4	119	80	3	605	19	20	15	44	1.87
11558984--11559200	63	3.6	61	71	17	150	22	20	14	43	1.87
11558947--11559140	56	3.3	56	72	16	169	21	19	15	43	1.87
11558738--11559378	238	2.7	236	81	4	700	19	20	15	44	1.87
11559577--11559636	25	2.3	26	91	2	95	25	30	18	26	1.98
11559666--11559718	3	17.7	3	100	0	106	32	0	0	67	0.91
11560074--11560111	20	1.9	20	89	10	60	23	5	34	36	1.78
11561301--11561342	14	3.1	13	87	12	66	52	28	4	14	1.62
11561952--11561985	17	2.0	17	88	0	50	11	20	8	58	1.59
11563740--11563801	5	12.6	5	74	16	58	75	0	6	17	1.00
11563740--11563801	14	4.2	15	78	14	58	75	0	6	17	1.00
11563740--11563800	26	2.5	23	84	10	77	75	0	6	18	1.01
11563762--11563831	20	3.5	20	75	14	65	74	1	4	20	1.07
11563744--11563835	13	7.2	12	68	23	55	75	1	5	18	1.06
11563766--11563842	39	2.0	39	82	10	95	74	2	5	18	1.13
11564626--11564696	26	2.8	25	79	14	65	53	11	2	32	1.51
11564963--11565572	120	5.1	119	76	4	437	45	14	21	18	1.85
11565918--11566418	120	4.2	120	76	7	396	45	13	22	18	1.84
11565996--11566436	240	1.8	239	80	6	534	44	12	23	19	1.85
11565984--11566527	120	4.5	118	73	8	391	45	12	22	19	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11567300--11567377	22	3.5	21	77	16	77	2	16	3	76	1.04
11567300--11567403	44	2.3	43	81	12	113	2	15	4	76	1.06
11567320--11567412	12	7.6	12	71	16	66	3	13	5	77	1.07
11567320--11567384	25	2.7	24	81	9	62	4	15	3	76	1.07
11567300--11567403	45	2.3	45	80	11	117	2	15	4	76	1.06
11571486--11571526	9	4.7	9	87	6	57	17	2	0	80	0.82
11571582--11571639	5	11.6	5	72	20	50	74	0	5	20	1.01
11571602--11571673	19	3.8	18	77	12	65	75	2	4	18	1.09
11571582--11571639	24	2.3	26	85	5	84	74	0	5	20	1.01
11571652--11571687	19	1.9	18	88	5	54	83	5	2	8	0.89
11572476--11572522	3	16.0	3	91	4	78	70	0	0	29	0.88
11572521--11572552	3	10.7	3	100	0	64	34	0	0	65	0.93
11576822--11576999	89	2.0	90	91	3	288	45	19	16	17	1.86
11577132--11577258	64	2.0	64	93	0	218	45	11	14	27	1.80
11581728--11581877	73	2.1	73	92	2	248	49	7	10	32	1.65
11592313--11592370	22	2.6	23	81	10	66	39	5	5	50	1.47
11592649--11592684	17	2.1	18	89	5	56	47	5	2	44	1.41
11594824--11594864	10	4.2	10	82	14	50	29	0	0	70	0.87
11594824--11594864	20	2.1	19	90	4	64	29	0	0	70	0.87
11594824--11594864	19	2.1	21	86	13	61	29	0	0	70	0.87
11596020--11596067	21	2.3	19	77	19	51	47	0	2	50	1.12
11596036--11596080	21	2.1	21	87	0	63	51	2	0	46	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11597987--11598053	22	2.8	25	76	14	70	38	5	5	49	1.52
11601592--11601627	19	1.9	19	88	5	56	36	0	0	63	0.94
11601809--11601864	17	3.3	17	73	14	53	30	3	1	64	1.21
11602990--11603035	3	15.3	3	86	0	65	41	0	0	58	0.98
11604788--11604866	22	3.4	23	72	16	58	35	6	8	49	1.59
11604789--11604861	25	3.0	25	75	13	73	35	5	8	50	1.55
11604807--11604873	25	2.9	21	70	20	53	35	5	7	50	1.55
11605341--11605389	26	1.9	25	83	4	62	26	6	0	67	1.14
11608977--11609078	36	2.8	36	83	2	125	41	10	19	28	1.85
11614956--11615093	63	2.2	63	85	6	183	41	7	11	39	1.71
11614956--11615111	63	2.5	63	83	8	176	41	8	10	40	1.69
11615264--11615386	62	2.0	61	87	4	176	50	7	5	36	1.54
11615713--11615909	63	3.2	61	79	11	229	45	9	5	40	1.58
11615519--11615815	163	1.8	160	84	4	400	46	8	7	38	1.61
11618436--11618481	20	2.3	20	100	0	92	23	21	4	50	1.67
11627413--11627444	3	10.7	3	93	0	55	34	0	28	37	1.57
11631674--11631716	21	2.0	21	82	8	52	20	11	2	65	1.36
11637218--11637274	10	5.3	10	74	15	51	80	1	14	3	0.92
11637218--11637273	23	2.6	22	83	13	64	80	1	14	3	0.93
11637706--11638265	288	1.9	288	98	0	1075	29	12	11	46	1.77
11639199--11639732	292	1.8	291	84	6	742	27	14	12	45	1.81
11645216--11645268	13	3.8	13	80	14	52	43	0	3	52	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11654902--11654928	2	13.5	2	100	0	54	51	0	0	48	1.00
11656781--11656819	21	1.9	21	84	5	53	61	0	5	33	1.18
11656809--11656837	11	2.5	12	88	11	51	58	0	0	41	0.98
11659280--11659339	27	2.2	27	82	5	68	61	6	5	26	1.42
11659298--11659356	27	2.2	27	82	11	68	62	6	5	25	1.41
11659542--11659601	28	2.1	28	87	0	84	61	3	0	35	1.12
11659558--11659609	18	2.8	18	80	11	61	59	3	1	34	1.27
11659550--11659610	28	2.2	28	81	0	68	65	3	1	29	1.18
11659619--11659674	20	2.8	21	75	8	62	60	14	1	23	1.43
11659550--11659704	62	2.4	63	77	15	147	63	8	1	25	1.33
11659558--11659674	20	5.7	19	66	20	58	61	8	1	28	1.35
11659993--11660036	20	2.3	19	80	4	52	22	9	2	65	1.32
11660014--11660070	27	2.2	26	84	9	71	24	5	10	59	1.51
11661133--11661186	19	2.9	19	78	10	58	64	3	3	27	1.27
11661214--11661294	9	8.8	9	69	15	58	64	6	0	29	1.18
11661213--11661281	17	3.8	17	72	22	50	65	5	0	28	1.16
11661234--11661293	26	2.3	27	88	8	88	65	6	0	28	1.18
11661466--11661513	14	3.6	13	80	11	53	77	2	4	16	1.03
11661758--11661824	24	2.8	23	82	10	73	62	2	4	29	1.29
11661790--11661842	23	2.4	22	84	9	63	64	1	3	30	1.22
11668243--11668294	15	3.4	15	76	10	52	28	0	1	69	0.99
11669575--11670619	48	22.1	47	79	8	873	37	21	13	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11669575--11670620	145	7.4	144	81	7	1038	37	21	13	27	1.91
11669574--11670621	333	3.2	330	83	6	1186	37	21	12	27	1.91
11679534--11679559	11	2.4	11	100	0	52	46	15	0	38	1.46
11683990--11684057	27	2.4	28	78	4	75	25	4	4	66	1.29
11686886--11686923	2	19.0	2	94	0	67	47	0	2	50	1.15
11686980--11687030	15	3.6	14	75	14	52	58	1	0	39	1.09
11687183--11687217	2	18.0	2	94	5	63	51	0	0	48	1.00
11693731--11693758	2	14.0	2	100	0	56	50	0	0	50	1.00
11701242--11701279	16	2.4	16	86	4	51	21	5	2	71	1.19
11704386--11704423	15	2.5	16	79	12	53	73	0	0	26	0.83
11704456--11704518	23	2.4	27	77	17	80	28	3	7	60	1.40
11705451--11705547	34	2.9	32	76	15	83	77	7	2	13	1.06
11712381--11712413	16	2.1	16	88	5	50	51	0	9	39	1.34
11719645--11719711	33	2.0	33	100	0	134	41	0	29	28	1.56
11724207--11724254	24	2.0	24	92	8	80	27	18	12	41	1.86
11724966--11725052	45	1.9	45	83	4	113	35	17	26	20	1.95
11726642--11726672	15	2.1	14	94	5	53	61	0	0	38	0.96
11726890--11726925	18	2.0	18	88	0	54	44	36	2	16	1.63
11738906--11738961	17	3.4	17	73	9	62	66	14	0	19	1.26
11738900--11738967	32	2.3	28	76	14	66	64	11	1	22	1.34
11739800--11739849	25	2.0	25	100	0	100	16	28	4	52	1.61
11740178--11740204	4	6.8	4	100	0	54	77	0	0	22	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11740650--11740703	25	2.2	25	89	0	81	40	3	18	37	1.69
11741518--11741556	17	2.2	18	86	4	53	51	2	0	46	1.14
11742809--11742866	29	2.0	29	93	0	98	37	1	18	41	1.61
11750498--11750522	6	4.2	6	100	0	50	52	0	0	48	1.00
11751053--11751101	25	1.9	26	91	4	82	40	10	2	46	1.49
11751812--11751853	14	3.0	14	85	0	57	14	9	0	76	1.02
11753654--11753708	3	18.3	3	100	0	110	32	0	0	67	0.91
11754046--11754089	20	2.2	20	84	11	56	56	6	0	36	1.26
11757651--11757690	20	2.0	20	85	0	53	57	0	0	42	0.98
11773952--11774010	31	1.9	31	92	0	100	30	18	20	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120