genome.fa.s146.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  87  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11393534--11393577	20	2.3	19	84	4	52	25	9	4	61	1.45
11393531--11393580	19	2.4	22	83	12	70	26	8	4	62	1.41
11393627--11393672	18	2.4	19	80	20	60	23	17	0	58	1.38
11393739--11393808	17	4.0	16	71	14	50	17	1	5	75	1.06
11393767--11393800	10	3.4	10	92	8	52	8	2	5	82	0.93
11393740--11393809	9	8.0	8	74	16	50	15	1	5	77	1.03
11395028--11395101	38	1.9	39	83	8	98	40	0	1	58	1.07
11395818--11395860	17	2.6	17	81	3	52	37	0	2	60	1.10
11395928--11396002	27	2.8	27	82	7	82	8	12	4	76	1.15
11396066--11396127	29	2.1	29	85	11	83	6	12	1	79	1.00
11396431--11396479	24	2.0	24	84	0	62	40	0	0	59	0.98
11396485--11396514	7	4.4	7	95	4	53	40	0	0	60	0.97
11401467--11401498	2	16.0	2	93	0	55	46	0	0	53	1.00
11404226--11404267	21	2.0	21	95	4	75	76	4	4	14	1.12
11407844--11407893	25	2.0	25	100	0	100	48	8	8	36	1.62
11408351--11408404	17	3.1	17	76	10	56	42	0	0	57	0.98
11408349--11408391	18	2.5	17	84	3	59	44	0	0	55	0.99
11408367--11408421	23	2.4	23	81	6	58	43	0	0	56	0.99
11408412--11408455	22	2.0	22	86	0	61	34	2	0	63	1.07
11408361--11408490	18	7.2	18	63	22	51	37	1	0	60	1.06
11411193--11411246	9	5.8	9	77	12	56	51	20	12	14	1.75
11419006--11419044	2	19.5	2	100	0	78	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11421085--11421118	17	1.9	18	88	5	52	67	0	8	23	1.18
11421565--11421631	32	2.1	33	85	2	91	40	10	5	43	1.63
11427254--11427307	28	1.9	28	88	7	83	29	25	5	38	1.79
11428454--11428496	23	1.9	23	90	4	70	20	0	13	65	1.27
11433845--11434138	61	4.8	60	70	14	197	35	11	13	40	1.80
11433960--11434261	123	2.4	123	76	8	272	37	11	13	37	1.81
11434108--11434349	62	3.9	63	76	9	174	38	13	10	37	1.80
11439233--11439271	15	2.8	13	81	11	51	82	7	2	7	0.94
11439617--11439649	14	2.4	14	90	5	50	45	0	18	36	1.49
11440122--11440189	34	2.0	34	82	5	84	27	8	17	45	1.78
11440393--11440701	46	6.8	46	75	7	222	36	7	14	41	1.74
11440418--11440677	137	1.9	137	82	7	323	36	7	15	40	1.75
11441881--11441930	6	8.7	6	82	8	59	18	2	16	64	1.39
11441967--11442006	19	2.0	20	85	4	55	80	2	12	5	0.98
11442323--11442387	34	1.9	34	81	6	78	30	7	12	49	1.68
11442589--11442633	20	2.2	20	84	0	63	22	2	11	64	1.36
11443010--11443051	18	2.3	18	80	8	50	9	7	2	80	0.97
11443110--11443163	24	2.2	24	90	6	83	31	3	11	53	1.53
11443105--11443143	19	2.1	19	85	0	51	25	5	12	56	1.57
11443268--11443300	14	2.3	15	89	5	50	30	9	15	45	1.77
11445517--11445558	19	2.2	19	91	0	66	14	2	35	47	1.57
11446787--11447081	146	2.0	145	96	0	545	37	7	8	45	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11448600--11450039	357	4.0	357	97	0	2742	40	12	6	40	1.68
11453469--11453500	13	2.5	13	95	5	57	34	0	0	65	0.93
11453469--11453500	6	5.2	6	92	7	55	34	0	0	65	0.93
11459602--11459633	17	1.9	16	93	6	55	12	9	3	75	1.16
11460804--11460832	14	2.1	14	93	6	51	27	0	10	62	1.28
11460859--11460920	31	2.0	31	83	0	79	25	8	12	53	1.66
11465688--11465714	12	2.2	12	100	0	54	85	7	7	0	0.75
11466065--11466186	18	7.1	16	80	15	79	77	0	14	7	1.03
11466065--11466161	9	11.1	9	86	10	139	79	0	12	8	0.93
11466116--11466187	25	3.0	23	82	12	65	75	1	16	6	1.10
11466071--11466191	9	14.2	8	80	14	50	76	0	15	6	1.03
11467395--11467437	22	2.0	22	90	0	68	34	4	18	41	1.71
11467393--11467450	22	2.6	22	81	5	64	36	6	17	39	1.76
11467983--11468460	43	11.0	43	83	3	539	24	13	18	42	1.87
11467983--11468460	130	3.7	130	85	4	597	24	13	18	42	1.87
11469865--11469896	15	2.1	15	94	0	55	78	0	0	21	0.76
11475434--11475458	3	8.3	3	100	0	50	32	0	0	68	0.90
11475464--11475502	10	3.8	10	80	6	51	12	12	0	74	1.08
11475463--11475509	21	2.4	19	89	10	76	10	10	0	78	0.96
11485797--11485839	9	4.8	9	91	8	70	86	0	0	13	0.58
11485799--11485844	8	5.5	8	89	10	58	86	0	0	13	0.56
11485799--11485850	17	2.9	18	83	11	72	86	0	1	11	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11485797--11485852	28	2.0	29	89	3	87	85	0	1	12	0.67
11485798--11485852	20	2.8	19	86	10	67	87	0	1	10	0.63
11485797--11485852	14	3.9	14	79	11	60	85	0	1	12	0.67
11486608--11487298	119	5.8	119	78	5	551	19	21	14	43	1.87
11487766--11487839	3	24.7	3	97	0	139	32	1	0	66	1.00
11487838--11487886	22	2.2	22	85	7	64	4	14	2	79	0.97
11488720--11488754	5	7.0	5	87	12	54	20	0	2	77	0.90
11488712--11488752	15	2.9	14	86	10	57	14	2	2	80	0.92
11489302--11489335	2	17.0	2	100	0	68	50	0	0	50	1.00
11491083--11491114	3	10.7	3	93	0	55	65	0	3	31	1.08
11494598--11494628	13	2.3	14	94	5	55	90	0	9	0	0.46
11499674--11499727	9	6.4	8	80	19	65	70	0	1	27	0.98
11499674--11499727	17	3.2	16	80	19	65	70	0	1	27	0.98
11499678--11499731	16	3.1	18	82	17	69	62	0	1	35	1.06
11500157--11500200	20	2.2	20	92	4	72	45	0	0	54	0.99
11500157--11500207	20	2.6	20	87	3	59	47	0	1	50	1.12
11501706--11501744	17	2.4	16	84	12	53	38	0	2	58	1.12
11508812--11508843	14	2.3	14	94	0	55	84	0	3	12	0.74
11508933--11508967	15	2.3	15	90	0	52	77	2	11	8	1.10
11509056--11509116	17	3.6	16	80	10	59	67	0	3	29	1.07
11509068--11509123	12	4.7	12	80	6	51	73	0	1	25	0.93
11509160--11509207	21	2.3	20	86	10	62	58	2	2	37	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11509492--11509555	18	3.3	19	79	14	69	60	3	6	29	1.36
11521812--11521941	43	2.9	43	80	6	143	36	9	15	38	1.79
11521808--11521986	45	4.0	45	76	5	155	34	9	15	40	1.80
11521782--11521992	45	4.7	45	74	8	117	34	9	15	41	1.78
11522880--11522990	31	3.5	30	72	12	96	22	18	9	48	1.78
11522839--11523024	65	2.8	65	80	4	212	22	17	10	50	1.76
11523017--11523478	43	10.8	43	78	3	396	26	14	13	44	1.83
11523134--11523247	42	2.7	41	83	4	129	27	11	15	45	1.81
11529893--11529932	19	2.2	17	86	13	53	17	5	0	77	0.94
11535077--11535102	13	2.0	13	100	0	52	23	7	15	53	1.67
11536544--11536588	17	2.6	18	89	3	65	73	4	0	22	1.01
11536526--11536582	22	2.6	22	81	10	64	71	3	1	22	1.10
11536540--11536595	22	2.5	23	80	11	62	73	3	1	21	1.08
11537713--11537922	37	5.7	36	77	6	172	42	12	21	22	1.86
11537728--11537922	74	2.6	74	76	4	198	43	12	21	22	1.86
11537890--11538113	121	1.9	121	83	0	295	45	14	20	19	1.85
11539339--11539386	21	2.2	23	85	7	64	8	16	2	72	1.18
11543690--11543761	18	3.7	18	71	28	58	72	1	4	22	1.10
11543705--11543781	22	3.3	23	82	15	79	71	2	3	22	1.15
11543681--11543781	25	4.2	22	77	20	80	72	2	3	20	1.14
11543731--11543773	17	2.4	18	85	11	54	76	4	0	18	0.95
11544231--11544269	20	2.0	20	94	0	69	53	28	0	17	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11544636--11544665	3	10.3	3	92	7	53	66	0	0	33	0.92
11544637--11544727	37	2.4	36	80	12	94	56	3	4	36	1.36
11544636--11544733	42	2.3	44	77	12	105	58	3	4	34	1.33
11544934--11545104	85	2.0	85	86	2	236	28	16	8	46	1.76
11546167--11546196	11	2.6	11	94	5	51	50	0	3	46	1.18
11546377--11546420	19	2.2	20	84	4	54	59	9	0	31	1.29
11546868--11546911	21	2.2	20	87	4	61	36	2	6	54	1.40
11546872--11546917	21	2.2	21	84	0	56	45	2	8	43	1.47
11547007--11547062	18	3.1	17	80	10	58	39	0	7	53	1.28
11547158--11547207	19	2.5	20	87	3	66	30	0	4	66	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120