genome.fa.s146.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  59  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6754129--6754193	30	2.1	32	88	8	98	50	0	0	49	1.00
6754134--6754202	32	2.2	32	84	10	88	53	1	0	44	1.09
6754570--6754632	13	4.7	13	74	14	56	55	3	1	39	1.25
6754622--6754661	19	2.1	19	86	9	55	47	0	0	52	1.00
6754750--6754790	19	2.2	19	86	0	55	48	4	0	46	1.23
6754820--6754856	12	3.1	12	92	0	56	48	8	5	37	1.56
6754987--6755054	26	2.7	24	75	6	64	48	0	5	45	1.26
6755197--6755239	22	2.0	22	81	9	52	39	2	6	51	1.42
6755409--6755466	12	4.6	12	74	19	55	53	1	1	43	1.21
6755380--6755468	39	2.4	35	85	12	108	52	1	2	43	1.20
6755409--6755465	27	2.1	27	83	6	71	52	1	1	43	1.21
6755475--6755545	26	2.8	26	72	10	65	49	0	1	49	1.09
6755451--6755537	26	3.4	26	78	13	65	48	0	0	51	1.00
6755645--6755702	14	4.2	14	69	20	50	51	0	1	46	1.11
6755710--6755741	16	2.0	16	93	0	55	46	0	0	53	1.00
6755712--6755774	25	2.4	25	75	15	58	44	1	1	52	1.20
6757040--6757106	30	2.3	29	87	5	100	50	2	5	40	1.42
6757259--6757291	17	1.9	17	93	0	57	33	0	6	60	1.21
6757879--6757950	37	1.9	38	85	2	101	37	2	8	51	1.47
6758366--6758407	13	3.2	13	83	10	50	47	0	0	52	1.00
6758597--6758637	15	2.6	16	88	3	66	46	0	2	51	1.14
6758703--6758757	21	2.6	22	83	13	64	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6758930--6758963	11	3.1	11	86	0	50	52	0	0	47	1.00
6759563--6759608	21	2.2	20	88	3	65	50	2	0	47	1.13
6760480--6760526	23	2.0	24	83	4	60	51	0	0	48	1.00
6761128--6761526	182	2.2	182	80	4	430	42	8	9	40	1.66
6760902--6761526	179	3.5	179	76	7	548	42	8	9	39	1.68
6761705--6761747	10	4.4	10	88	2	61	55	0	2	41	1.12
6764065--6764115	22	2.4	22	83	9	61	45	0	3	50	1.20
6764263--6764346	12	7.2	12	75	18	63	46	1	1	51	1.16
6764281--6764317	13	3.2	12	85	14	51	56	2	0	40	1.13
6764291--6764324	17	1.9	17	88	5	50	52	2	2	41	1.31
6764339--6764394	19	3.0	19	73	19	55	53	0	3	42	1.18
6764485--6764554	27	2.4	30	81	13	76	44	1	5	48	1.35
6764501--6764568	24	2.9	24	72	12	61	48	0	5	45	1.26
6764501--6764591	47	1.9	47	80	8	105	48	0	6	45	1.28
6764551--6764601	18	2.8	18	72	21	61	54	0	7	37	1.29
6765104--6765150	24	2.0	24	83	8	60	40	2	2	55	1.24
6765858--6765909	14	3.7	14	80	7	61	50	0	0	50	1.00
6765902--6765946	22	2.0	23	86	4	65	48	6	0	44	1.29
6765985--6766070	28	3.1	28	73	18	81	44	1	1	53	1.15
6766268--6766330	23	2.7	23	85	7	92	50	4	3	41	1.39
6766985--6767031	16	3.1	17	82	17	59	48	4	0	46	1.21
6767017--6767088	29	2.5	30	80	12	80	48	1	1	48	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6767171--6767221	27	1.9	26	88	11	77	47	3	1	47	1.32
6767325--6767371	16	2.9	17	81	12	55	51	0	0	48	1.00
6767526--6767567	22	2.0	22	86	9	61	54	0	4	40	1.21
6768490--6768534	22	2.0	22	91	0	72	51	0	2	46	1.13
6768742--6768785	19	2.3	19	80	0	52	54	0	0	45	0.99
6769675--6769722	14	3.3	15	82	8	55	60	2	2	35	1.20
6769919--6769960	19	2.2	20	86	4	59	50	2	2	45	1.27
6770014--6770062	24	2.0	24	84	0	62	44	0	2	53	1.12
6770026--6770068	12	3.5	12	78	6	50	48	0	0	51	1.00
6770019--6770100	22	3.7	23	70	13	64	51	0	2	46	1.14
6770209--6770318	13	8.6	13	69	16	61	47	1	0	50	1.18
6770798--6770866	32	2.0	33	83	10	86	43	4	2	49	1.37
6770927--6770960	15	2.3	15	90	5	52	0	8	14	76	1.01
6771185--6771237	6	8.7	6	79	4	61	79	1	3	15	0.96
6771492--6771580	43	2.2	40	86	8	124	44	20	14	20	1.86
6771877--6772074	22	8.9	22	77	8	141	36	16	9	37	1.81
6771971--6772072	21	4.7	21	77	9	96	36	15	8	39	1.79
6771902--6772074	67	2.5	68	85	2	249	37	15	9	37	1.80
6771996--6772121	46	2.8	46	91	1	191	36	14	10	38	1.80
6772572--6773013	63	7.0	63	77	7	303	29	25	9	35	1.87
6773796--6773828	15	2.3	15	94	5	59	6	15	0	78	0.93
6773783--6773827	20	2.1	21	88	8	65	6	15	0	77	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6774173--6774218	24	1.9	24	82	8	58	4	26	2	67	1.21
6776074--6776130	24	2.4	22	82	11	69	45	3	0	50	1.18
6776266--6776415	12	12.6	12	73	18	95	49	2	0	48	1.17
6776257--6776331	22	3.2	25	76	19	72	44	2	0	53	1.14
6776255--6776318	26	2.6	26	80	11	73	42	1	0	56	1.09
6776247--6776417	19	8.4	21	67	22	80	49	1	0	47	1.16
6776299--6776441	48	2.9	48	91	4	216	53	2	0	44	1.17
6776334--6776446	25	4.6	25	78	13	121	54	1	0	43	1.10
6776336--6776448	6	18.7	6	68	21	67	54	1	0	43	1.10
6776314--6776415	23	4.4	23	70	23	63	53	1	0	43	1.18
6776333--6776448	29	4.0	29	75	14	100	55	1	0	43	1.10
6776342--6776439	17	5.8	18	68	22	61	55	2	0	42	1.11
6776660--6776700	11	3.6	11	83	6	55	53	0	2	43	1.13
6777611--6777789	39	4.6	39	76	13	113	46	0	0	52	1.04
6777635--6777788	29	5.3	29	80	10	158	47	0	0	52	1.00
6777635--6777789	48	3.2	48	99	0	301	47	0	0	52	1.00
6777821--6777869	19	2.4	21	83	6	57	53	0	4	42	1.20
6778108--6778175	29	2.5	27	78	17	70	47	1	0	51	1.09
6778105--6778185	18	4.5	16	73	17	54	48	1	0	50	1.08
6778259--6778311	25	2.1	25	83	13	65	52	0	0	47	1.00
6778585--6778634	16	2.7	19	70	20	52	50	0	0	50	1.00
6778573--6778635	25	2.4	25	80	15	65	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6778693--6778752	31	1.9	32	86	10	88	51	3	0	45	1.17
6778742--6778861	61	2.0	59	81	15	140	48	2	2	46	1.29
6779603--6779670	29	2.5	27	78	17	70	45	1	0	52	1.09
6779600--6779681	18	4.6	18	77	15	66	47	1	0	51	1.08
6779671--6779716	22	2.0	23	84	12	60	54	2	0	43	1.12
6779694--6779738	16	3.1	15	75	24	51	53	0	0	46	1.00
6779787--6779865	15	5.3	15	71	15	58	54	0	0	45	0.99
6779961--6780002	15	2.9	14	86	13	50	45	2	2	50	1.27
6780111--6780160	16	2.7	19	70	20	52	50	0	0	50	1.00
6780218--6780284	31	2.2	32	82	15	88	50	2	0	46	1.16
6780773--6780829	23	2.6	23	78	10	57	49	3	1	45	1.29
6781767--6781829	26	2.2	31	75	18	73	52	1	0	46	1.10
6781958--6782045	22	4.3	21	72	18	69	43	1	1	54	1.15
6782036--6782079	4	10.0	4	81	18	52	52	2	0	45	1.13
6782042--6782079	14	2.7	14	84	11	51	52	2	0	44	1.14
6782036--6782079	18	2.5	16	80	20	52	52	2	0	45	1.13
6782112--6782149	19	2.0	20	84	5	51	44	0	2	52	1.14
6782120--6782179	12	5.0	12	73	15	52	46	0	0	53	1.00
6782119--6782175	19	3.0	19	82	14	57	47	0	0	52	1.00
6782425--6782473	24	2.0	24	85	14	66	46	0	2	51	1.12
6782545--6782595	13	3.3	15	79	20	52	52	1	1	43	1.23
6782527--6782585	26	2.3	25	80	13	75	52	1	0	45	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6782697--6782752	9	6.2	9	76	14	53	64	1	0	33	1.04
6784687--6784764	25	3.0	27	80	9	92	51	1	1	46	1.17
6784707--6784754	16	2.9	16	81	12	62	45	0	2	52	1.12
6784704--6784761	18	3.4	18	75	17	54	50	0	1	48	1.11
6784844--6784891	16	3.3	14	78	18	53	60	4	2	33	1.27
6784800--6784885	43	2.0	44	81	2	102	54	4	3	37	1.38
6784996--6785095	19	5.4	18	71	22	75	48	1	3	48	1.23
6785138--6785167	9	3.2	9	95	4	51	43	0	3	53	1.17
6785835--6785878	23	1.9	23	86	9	63	52	2	0	45	1.13
6786145--6786704	181	3.1	179	81	4	655	40	11	8	39	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120