genome.fa.s146.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  26  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2876845--2876897	26	2.0	26	92	0	88	28	18	24	28	1.98
2876790--2877311	162	3.3	159	71	13	415	24	27	26	20	1.99
2878020--2878177	45	3.5	45	78	3	165	18	32	29	18	1.96
2878483--2878752	148	1.8	147	82	4	346	25	27	26	20	1.99
2878960--2879012	26	2.0	26	85	7	72	28	20	22	28	1.99
2878802--2879167	196	1.9	196	84	3	495	21	30	27	20	1.98
2880885--2880937	26	2.0	26	96	0	97	28	20	22	28	1.99
2887785--2887947	45	3.6	45	77	8	118	21	30	27	20	1.98
2888204--2888256	26	2.0	26	92	7	90	26	20	26	26	1.99
2888034--2888425	195	2.0	195	79	6	420	22	26	27	23	1.99
2889793--2889845	26	2.0	26	92	0	88	24	18	26	30	1.98
2889989--2890041	26	2.0	26	92	0	88	24	15	28	32	1.95
2890356--2890422	32	2.1	33	97	2	127	38	20	10	29	1.86
2890865--2890932	34	2.0	34	82	0	82	20	26	29	23	1.99
2891429--2891481	26	2.0	26	92	0	88	28	18	24	28	1.98
2891627--2891986	196	1.8	196	80	2	427	23	30	25	20	1.99
2892277--2892443	90	1.9	89	80	6	194	19	30	27	22	1.98
2893111--2893163	26	2.0	26	92	0	88	30	15	24	30	1.95
2893210--2893252	19	2.3	19	91	0	68	37	11	37	13	1.82
2893680--2893732	26	2.0	26	92	0	88	24	18	28	28	1.98
2894850--2895042	45	4.3	45	80	2	183	18	32	30	18	1.95
2894843--2895042	90	2.2	90	81	3	224	19	33	29	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2895824--2895875	25	2.0	26	88	3	79	25	17	28	28	1.97
2896749--2896773	13	1.9	13	100	0	50	24	16	36	24	1.94
2897125--2897574	159	2.8	158	78	4	476	22	29	28	19	1.98
2897610--2897662	26	2.0	26	85	0	70	26	16	26	30	1.97
2898823--2898925	45	2.3	45	84	3	127	23	33	26	16	1.95
2899750--2899801	25	2.0	26	85	3	70	28	19	25	26	1.98
2900673--2900697	13	1.9	13	100	0	50	24	16	36	24	1.94
2902464--2902488	13	1.9	13	100	0	50	24	16	36	24	1.94
2902532--2902688	45	3.5	45	75	6	147	15	29	33	21	1.94
2903498--2903576	26	3.0	26	96	0	140	25	20	27	26	1.99
2903340--2903746	222	1.8	222	84	3	550	22	29	27	20	1.99
2904509--2904710	90	2.3	90	84	0	253	15	33	31	18	1.93
2904509--2904729	45	5.0	45	80	1	221	16	33	31	19	1.94
2905488--2905540	26	2.0	26	92	0	88	26	20	26	26	1.99
2907063--2907105	12	3.6	12	90	0	68	11	30	20	37	1.89
2907128--2907180	26	2.0	26	88	0	79	26	16	28	28	1.97
2908122--2908294	45	3.8	45	82	1	186	15	30	32	21	1.95
2908117--2908323	90	2.3	90	82	2	247	17	30	30	20	1.96
2908957--2909009	26	2.0	26	92	0	88	26	16	26	30	1.97
2909953--2910063	44	2.5	45	82	1	134	17	29	31	21	1.96
2912464--2912516	26	2.0	26	89	7	81	30	18	22	28	1.98
2913886--2913911	13	2.0	13	100	0	52	15	15	46	23	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2913966--2914111	45	3.2	45	72	3	132	17	33	29	19	1.95
2914553--2914605	26	2.0	26	96	0	97	28	16	24	30	1.97
2915849--2915901	26	2.0	26	85	0	70	22	22	26	28	1.99
2915873--2916163	159	1.8	158	80	4	343	23	28	26	20	1.99
2916979--2917021	18	2.4	18	92	0	68	23	27	25	23	2.00
2916988--2917024	18	2.1	18	100	0	74	24	27	21	27	1.99
2917145--2917169	13	1.9	13	100	0	50	24	16	36	24	1.94
2918261--2918368	45	2.4	45	82	4	128	20	28	30	20	1.97
2918671--2918871	45	4.5	45	79	6	203	18	32	28	19	1.96
2918671--2918871	90	2.3	90	83	3	237	18	32	28	19	1.96
2919176--2919426	135	1.9	135	81	2	306	26	25	27	20	1.99
2919311--2919605	159	1.9	159	80	5	346	24	27	28	20	1.99
2919640--2919691	25	2.0	25	88	3	77	30	19	21	28	1.97
2921137--2921189	26	2.0	26	92	0	88	24	18	28	28	1.98
2920966--2921344	196	1.9	196	83	5	489	22	27	27	22	1.99
2922549--2922800	136	1.9	136	85	0	351	24	25	28	20	1.99
2922844--2923266	170	2.5	169	81	5	437	22	28	28	21	1.99
2923836--2924009	90	1.9	90	80	0	204	20	32	27	20	1.97
2924494--2924546	26	2.0	26	88	0	79	26	18	26	28	1.98
2924618--2924758	69	2.0	69	91	0	228	13	37	26	21	1.91
2925235--2925434	89	2.2	90	81	2	224	19	33	27	20	1.96
2925247--2925466	45	4.9	45	73	4	158	17	31	31	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2925291--2925455	90	1.8	89	84	1	222	17	31	32	18	1.94
2927409--2927498	45	2.0	45	84	4	119	16	34	31	17	1.93
2927410--2927508	45	2.2	45	81	3	110	15	34	31	19	1.92
2927740--2928798	159	6.6	159	71	9	625	22	29	28	19	1.98
2928016--2928066	26	2.0	26	84	0	66	27	15	27	29	1.96
2927740--2928798	158	6.6	159	71	8	580	22	29	28	19	1.98
2928493--2928545	26	2.0	26	92	0	88	26	22	22	28	1.99
2927740--2928788	479	2.2	479	84	2	1338	22	29	28	19	1.98
2928848--2928900	26	2.0	26	89	7	81	26	20	24	28	1.99
2935662--2935686	13	1.9	13	100	0	50	24	16	36	24	1.94
2935679--2935795	44	2.6	44	81	8	130	21	35	25	17	1.95
2935767--2935977	45	4.7	45	86	1	262	15	31	30	22	1.95
2935697--2935977	90	3.1	90	79	3	300	16	32	29	21	1.96
2936418--2936468	26	2.0	26	92	0	84	29	21	23	25	1.99
2936522--2936826	159	1.9	159	83	0	394	24	31	25	18	1.98
2936918--2936970	26	2.0	26	85	0	70	28	18	26	26	1.98
2937901--2938100	90	2.2	90	79	0	211	19	32	29	20	1.96
2937901--2938101	45	4.5	45	73	0	159	18	31	28	20	1.97
2938543--2938595	26	2.0	26	85	0	70	33	16	18	30	1.94
2939460--2939559	26	3.6	27	87	6	132	25	18	29	28	1.98
2940449--2940540	45	2.0	45	81	4	105	19	33	26	20	1.96
2940462--2940563	45	2.3	45	79	6	109	19	35	23	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2941108--2941160	26	2.0	26	92	0	88	28	18	24	28	1.98
2942465--2942572	45	2.4	45	75	3	110	19	30	31	18	1.96
2942536--2942599	33	1.9	33	90	0	101	21	31	28	18	1.97
2943370--2943420	26	2.0	26	96	0	93	25	19	29	25	1.99
2943723--2943775	26	2.0	26	88	0	79	24	16	28	30	1.97
2943039--2943846	355	2.3	355	90	0	1240	22	27	28	21	1.99
2944657--2945019	183	2.0	184	90	1	568	19	32	27	20	1.97
2944661--2945048	90	4.3	90	71	7	255	19	32	27	20	1.97
2945544--2945596	26	2.0	26	88	0	79	26	20	24	28	1.99
2946894--2947096	45	4.5	45	78	3	212	20	33	28	18	1.96
2946894--2947096	90	2.3	90	86	1	273	20	33	28	18	1.96
2947551--2947603	26	2.0	26	96	0	97	24	20	28	26	1.99
2947906--2947958	26	2.0	26	92	0	88	24	18	28	28	1.98
2948945--2949058	45	2.5	44	80	6	113	19	34	26	20	1.96
2948991--2949101	45	2.5	45	83	0	141	19	31	28	19	1.97
2949558--2949610	26	2.0	26	96	0	97	28	20	24	26	1.99
2949913--2949965	26	2.0	26	96	0	97	24	20	28	26	1.99
2950843--2950974	45	2.9	44	80	8	131	18	34	26	19	1.95
2950861--2951053	90	2.1	91	82	5	223	18	33	27	20	1.96
2950861--2951050	45	4.2	45	75	7	145	18	33	27	20	1.96
2950893--2951095	90	2.3	90	80	1	219	17	31	29	22	1.97
2951902--2951954	26	2.0	26	92	0	88	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2952258--2952310	26	2.0	26	96	0	97	24	20	28	26	1.99
2953252--2953410	45	3.5	46	80	1	162	16	28	32	23	1.96
2953709--2953995	158	1.8	158	85	4	409	22	28	28	20	1.98
2953883--2954134	136	1.9	136	85	5	357	25	29	26	18	1.98
2954751--2954806	26	2.2	26	93	0	94	30	19	21	28	1.98
2956062--2956194	45	3.0	45	85	0	131	17	31	32	18	1.94
2956096--2956194	45	2.2	45	90	0	153	18	31	33	17	1.94
2957634--2957658	13	1.9	13	100	0	50	24	16	36	24	1.94
2957709--2957862	45	3.4	45	75	5	132	20	30	29	19	1.97
2958904--2958956	26	2.0	26	85	0	70	30	16	24	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120