genome.fa.s6.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  10  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3362001--3362284	138	2.1	138	97	0	532	46	9	8	35	1.65
3364222--3364251	7	4.3	7	100	0	60	16	0	56	26	1.40
3376080--3376116	18	2.1	18	89	0	56	48	0	27	24	1.51
3381960--3381990	16	1.9	16	93	0	53	45	6	9	38	1.63
3394246--3394514	43	6.3	42	84	5	315	30	28	18	22	1.97
3394246--3394514	128	2.1	129	84	6	350	30	28	18	22	1.97
3394246--3394514	86	3.1	86	84	2	353	30	28	18	22	1.97
3399913--3399980	34	2.0	34	85	0	91	47	13	11	27	1.78
3399977--3400114	74	1.9	74	80	7	165	39	7	20	33	1.80
3400672--3400712	14	3.0	14	80	16	50	65	2	0	31	1.05
3402772--3402825	2	27.0	2	100	0	108	50	0	0	50	1.00
3404737--3404982	127	1.9	127	99	0	483	30	13	19	36	1.90
3413981--3414021	21	2.0	21	90	4	66	34	7	4	53	1.50
3415443--3415491	23	2.2	21	78	7	53	55	0	4	40	1.19
3419604--3419650	24	2.0	24	83	8	60	42	2	2	53	1.25
3420162--3420231	23	3.0	23	80	2	86	30	14	15	40	1.87
3420216--3420260	23	2.0	23	82	8	56	46	8	13	31	1.74
3421409--3421466	22	2.6	23	76	15	59	6	6	20	65	1.40
3421486--3421551	24	2.7	25	81	11	75	9	4	18	68	1.34
3429534--3429591	29	2.0	29	86	0	80	48	5	1	44	1.35
3430593--3430645	18	3.1	18	71	20	51	49	5	0	45	1.26
3430670--3430707	18	2.1	19	85	5	51	47	0	7	44	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3431948--3431987	16	2.3	19	79	12	50	50	0	2	47	1.14
3434290--3434316	14	1.9	14	100	0	54	51	14	7	25	1.68
3434374--3434490	47	2.5	47	83	6	132	56	19	3	20	1.56
3434797--3434867	31	2.3	31	86	11	94	23	12	19	43	1.86
3435079--3435120	19	2.3	18	80	15	50	42	16	14	26	1.86
3435353--3435392	16	2.3	19	87	12	59	50	0	0	50	1.00
3435516--3435548	16	2.1	16	94	5	59	0	39	0	60	0.97
3436727--3437073	72	4.7	73	79	6	308	35	13	25	25	1.93
3436817--3437073	75	3.5	73	81	7	272	37	12	25	24	1.90
3444410--3444435	3	8.7	3	100	0	52	69	0	0	30	0.89
3446517--3446551	18	1.9	18	88	0	52	51	14	2	31	1.57
3447605--3447664	31	1.9	30	83	12	77	28	15	10	46	1.77
3447904--3448057	31	5.2	31	63	12	79	47	11	14	25	1.79
3447904--3448057	59	2.6	59	88	0	227	47	11	14	25	1.79
3448866--3448902	6	6.3	6	90	6	58	48	0	2	48	1.15
3448836--3448897	31	2.0	30	87	3	88	43	0	3	53	1.17
3448831--3448917	17	5.4	16	75	19	65	43	0	2	54	1.13
3448867--3448903	11	3.3	11	88	3	56	45	0	2	51	1.15
3448858--3448917	23	2.7	23	68	29	56	45	0	1	53	1.10
3449710--3449756	17	2.7	18	83	6	62	53	4	0	42	1.20
3450130--3450168	12	3.2	12	96	0	69	66	0	33	0	0.92
3450723--3450906	30	6.2	30	86	2	230	38	22	2	35	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3450867--3451002	60	2.3	58	78	13	129	28	25	6	39	1.81
3452739--3452776	18	2.1	18	85	9	51	23	7	15	52	1.69
3453961--3454005	18	2.4	19	77	3	56	53	0	8	37	1.32
3454954--3455007	2	27.0	2	100	0	108	50	0	0	50	1.00
3455971--3456010	20	2.1	19	86	13	55	47	0	0	52	1.00
3456070--3456111	18	2.3	18	91	0	66	54	0	0	45	0.99
3456049--3456242	100	2.0	100	88	1	291	56	9	2	31	1.46
3460468--3460665	99	2.0	99	88	2	290	39	14	22	22	1.91
3461417--3461483	18	3.6	18	74	20	57	58	2	2	35	1.29
3462992--3463053	28	2.2	28	94	0	106	41	12	20	24	1.87
3463821--3463869	23	2.1	23	85	7	64	48	4	2	44	1.33
3467270--3467310	21	2.0	21	85	9	57	36	4	2	56	1.34
3474450--3474515	31	2.1	31	94	0	114	42	15	6	36	1.71
3477145--3477176	6	5.3	6	92	0	55	0	46	3	50	1.17
3477709--3477768	24	2.5	24	80	0	75	18	15	30	36	1.91
3481814--3481843	15	1.9	16	93	6	53	66	26	3	3	1.23
3484273--3484327	24	2.2	24	83	3	65	47	3	3	45	1.38
3484632--3484664	17	1.9	17	93	0	57	36	3	6	54	1.41
3484990--3485019	11	2.9	10	90	9	51	30	0	0	70	0.88
3490196--3490241	21	2.2	21	77	14	51	39	2	15	43	1.59
3490203--3490247	21	2.2	21	84	7	58	37	2	13	46	1.55
3492076--3492120	23	2.0	21	83	8	54	26	11	15	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3492911--3492975	27	2.4	28	82	7	80	35	38	21	4	1.74
3492911--3492993	27	3.1	26	78	3	76	36	36	21	6	1.78
3493095--3493157	12	5.2	12	71	7	56	30	31	12	25	1.93
3493099--3493184	24	3.6	24	78	6	93	25	30	15	29	1.96
3494318--3494371	29	1.9	29	85	7	76	53	5	14	25	1.63
3499618--3499657	18	2.2	20	82	13	50	50	7	0	42	1.30
3506171--3506207	17	2.1	19	90	10	60	32	2	5	59	1.34
3506959--3506997	20	2.1	18	85	9	51	38	17	12	30	1.88
3507356--3507432	40	1.9	41	82	12	97	33	7	5	53	1.52
3513290--3513336	24	2.0	24	91	0	76	27	21	23	27	1.99
3514361--3514611	99	2.5	99	79	6	276	32	15	11	39	1.85
3545385--3545422	17	2.2	17	86	9	51	57	5	0	36	1.21
3548160--3548197	6	6.5	6	96	3	69	86	0	13	0	0.56
3583704--3583733	16	1.9	15	93	6	51	53	0	0	46	1.00
3592735--3592841	55	1.9	55	82	0	133	34	14	11	39	1.82
3593561--3593598	18	2.1	18	85	9	51	52	2	7	36	1.45
3593608--3593976	197	1.9	198	80	4	431	35	19	8	35	1.83
3601481--3601541	31	2.0	31	84	12	83	29	4	13	52	1.61
3601630--3601659	14	2.1	14	100	0	60	36	13	13	36	1.84
3602471--3602507	17	2.2	17	90	0	56	59	2	0	37	1.12
3603562--3603606	23	2.0	23	86	8	65	60	0	11	28	1.31
3604362--3604458	30	3.3	30	74	9	83	34	21	4	40	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3604426--3604592	54	3.0	54	77	13	178	32	31	4	31	1.77
3604475--3604661	58	3.2	58	83	3	221	32	30	3	33	1.76
3604505--3604654	30	5.1	29	70	16	87	34	28	2	34	1.71
3604525--3604625	28	3.5	29	72	16	84	35	30	1	31	1.69
3612916--3613055	72	2.0	69	90	6	221	32	10	16	40	1.83
3614361--3614412	6	8.8	6	77	10	54	42	0	3	53	1.19
3614360--3614411	17	3.0	17	91	2	77	40	0	3	55	1.18
3615213--3615244	16	2.0	16	93	0	55	53	0	0	46	1.00
3615220--3615284	19	3.3	19	80	16	71	52	1	1	44	1.19
3615220--3615284	18	3.3	19	80	10	69	52	1	1	44	1.19
3616366--3616719	29	12.1	29	71	16	189	34	28	3	33	1.73
3616409--3616748	58	5.8	58	84	5	393	33	29	2	33	1.73
3616409--3616750	117	2.9	115	87	4	472	33	29	3	33	1.74
3628453--3629272	76	10.8	76	91	0	1288	33	15	18	32	1.92
3629541--3629620	6	13.8	6	71	16	62	40	1	3	55	1.26
3629554--3629619	17	3.9	17	89	0	96	37	1	3	57	1.23
3629540--3629595	28	2.0	29	89	3	87	37	1	3	57	1.27
3629548--3629613	11	5.9	11	75	3	51	37	1	3	57	1.23
3630622--3630692	30	2.4	28	82	17	83	32	26	4	36	1.76
3630637--3630784	29	5.1	29	69	21	89	32	30	2	34	1.72
3630651--3630828	58	3.1	57	85	4	223	33	26	2	36	1.71
3647400--3647469	32	2.2	32	97	0	131	40	1	28	30	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3647400--3647469	16	4.4	16	89	3	106	40	1	28	30	1.65
3647640--3647785	58	2.5	59	83	8	183	50	2	2	45	1.25
3647759--3647809	24	2.1	24	82	10	59	56	0	5	37	1.23
3653635--3653674	20	2.0	20	85	9	55	60	2	0	37	1.11
3655040--3655077	20	1.9	19	89	5	58	15	15	10	57	1.64
3656017--3656081	30	2.2	30	88	5	96	44	0	1	53	1.09
3660793--3660833	19	2.2	19	90	0	64	14	0	36	48	1.44
3668717--3668767	21	2.5	20	84	6	66	45	3	7	43	1.51
3668723--3668776	21	2.6	21	85	5	65	50	5	9	35	1.58
3672168--3672449	29	9.7	29	73	21	211	31	4	31	32	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125