genome.fa.s6.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  110  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33511583--33511616	17	2.0	17	88	11	52	26	20	0	52	1.46
33518391--33518550	79	2.0	80	97	1	304	28	18	19	33	1.96
33533568--33533614	19	2.5	18	80	10	58	46	14	14	23	1.82
33539544--33539569	4	6.5	4	100	0	52	26	0	0	73	0.84
33540765--33541042	119	2.4	117	85	6	391	26	19	16	36	1.93
33540765--33541042	58	4.7	60	81	10	338	26	19	16	36	1.93
33541871--33541935	30	2.2	30	94	0	112	58	16	3	21	1.52
33552689--33552729	20	2.1	19	86	4	55	31	4	0	63	1.15
33552698--33552748	21	2.7	18	72	18	50	35	5	0	58	1.22
33565683--33565744	30	2.1	30	87	6	90	53	20	6	19	1.67
33583945--33583969	13	1.9	13	100	0	50	64	4	0	32	1.12
33598227--33598289	31	2.0	31	100	0	126	36	0	31	31	1.58
33604638--33604734	48	2.0	48	97	0	185	39	8	17	35	1.80
33615377--33615409	15	2.2	15	94	0	57	12	21	21	45	1.84
33617707--33617751	18	2.5	18	85	0	54	64	8	2	24	1.34
33619356--33619380	7	3.6	7	100	0	50	88	0	0	12	0.53
33620421--33620459	12	3.2	12	79	13	53	23	0	5	71	1.05
33620421--33620471	24	2.1	24	89	7	77	21	1	5	70	1.18
33625672--33625739	30	2.3	30	76	0	73	38	19	11	30	1.87
33632521--33632566	24	2.0	24	86	4	67	56	8	8	26	1.58
33642721--33642755	6	5.8	6	93	0	61	34	2	14	48	1.58
33644910--33644934	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33653706--33653735	15	2.1	14	93	6	51	0	10	0	90	0.47
33658820--33658850	2	15.5	2	100	0	62	48	0	51	0	1.00
33665303--33665336	2	17.0	2	87	0	50	50	0	47	2	1.16
33671088--33671151	29	2.2	30	77	8	69	54	4	3	37	1.37
33674337--33674384	15	3.2	15	74	11	53	58	4	6	31	1.42
33674332--33674386	16	3.5	16	75	12	60	58	5	5	30	1.44
33677150--33677199	21	2.4	21	89	0	73	24	14	28	34	1.93
33689170--33689194	3	8.3	3	100	0	50	32	0	68	0	0.90
33696398--33696429	16	2.0	16	100	0	64	31	0	18	50	1.48
33696743--33696811	30	2.3	30	92	0	111	31	18	17	31	1.94
33701203--33701233	4	7.8	4	100	0	62	51	0	22	25	1.48
33703151--33703191	19	2.2	19	86	8	57	60	0	2	36	1.10
33703142--33703191	17	2.7	18	84	12	66	56	0	2	42	1.11
33705605--33705650	23	2.0	23	82	0	56	36	19	8	34	1.83
33705969--33706060	34	2.6	36	77	6	107	60	7	8	22	1.51
33706494--33706553	28	2.1	28	90	6	95	16	1	11	70	1.25
33706505--33706564	28	2.1	28	82	11	70	18	0	15	66	1.25
33714324--33714370	25	1.9	24	87	12	69	19	6	10	63	1.47
33720179--33720205	13	2.1	13	100	0	54	0	14	0	85	0.61
33737605--33737658	22	2.4	23	81	3	56	51	1	1	44	1.22
33737632--33737692	31	2.0	31	93	3	106	47	0	1	50	1.10
33737698--33737732	18	1.9	18	94	0	61	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33748038--33748067	6	5.0	6	100	0	60	0	66	0	33	0.92
33749335--33749535	98	2.1	98	94	0	348	44	6	20	28	1.76
33753692--33753741	18	2.8	18	85	11	75	42	12	12	34	1.79
33754175--33754565	72	5.5	72	87	3	578	23	5	13	56	1.58
33754175--33754554	144	2.7	139	93	2	643	23	5	13	56	1.59
33762563--33762622	28	2.1	28	100	0	120	46	6	13	33	1.69
33763132--33763180	14	3.1	16	80	17	57	51	0	2	46	1.12
33796284--33796365	42	2.0	42	100	0	164	40	9	24	25	1.86
33797803--33797831	14	2.0	15	93	6	51	65	6	0	27	1.18
33806828--33806875	18	2.7	17	78	9	51	70	2	2	25	1.09
33806829--33806876	19	2.7	18	81	15	55	70	2	2	25	1.09
33810189--33810265	31	2.5	31	85	4	102	29	12	12	44	1.81
33814146--33814182	19	1.9	19	100	0	74	51	16	16	16	1.77
33814942--33814986	16	2.8	16	82	3	63	53	0	2	44	1.13
33815596--33815644	25	2.0	25	83	0	62	24	12	24	38	1.90
33815610--33815659	25	2.0	25	84	7	66	30	14	24	32	1.94
33822847--33822900	24	2.1	26	83	13	67	62	0	3	33	1.12
33826407--33826434	12	2.3	12	100	0	56	89	0	10	0	0.49
33828606--33828746	71	2.0	71	85	2	194	30	12	8	48	1.70
33838478--33838502	11	2.3	11	100	0	50	32	8	16	44	1.76
33842318--33842356	6	6.5	6	82	11	53	46	0	30	23	1.53
33843600--33843647	18	2.7	18	80	0	51	22	4	6	66	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33850227--33850286	15	3.7	15	71	16	57	48	0	3	48	1.18
33853530--33853599	31	2.3	31	97	0	131	20	18	35	25	1.95
33854022--33854087	33	2.0	33	93	0	114	30	9	15	45	1.77
33858042--33858097	28	2.0	28	100	0	112	39	3	14	42	1.63
33865801--33865849	24	2.1	24	92	3	82	30	12	6	51	1.64
33865801--33865865	24	2.8	24	85	2	69	30	12	7	49	1.68
33872640--33872685	24	1.9	24	90	0	74	58	6	2	32	1.36
33873033--33873073	22	1.9	22	85	5	57	65	4	4	24	1.32
33877966--33878003	18	2.1	19	85	5	51	42	5	5	47	1.48
33882054--33882099	24	1.9	23	86	8	65	58	15	2	23	1.48
33908996--33909036	7	6.1	7	83	11	50	68	2	0	29	1.03
33909001--33909036	13	2.8	13	86	0	54	69	2	0	27	1.02
33911160--33911207	24	2.0	24	100	0	96	29	12	33	25	1.92
33914524--33914570	23	2.0	25	87	8	71	53	4	4	38	1.40
33917172--33917297	63	2.0	63	98	0	243	34	23	19	21	1.96
33929489--33929525	17	2.2	17	100	0	74	59	10	0	29	1.31
33934066--33934107	5	8.4	5	89	0	57	14	4	2	78	1.01
33934051--33934107	15	3.9	15	75	9	55	14	5	3	77	1.08
33938914--33938977	16	3.9	16	73	15	60	60	1	0	37	1.06
33958024--33958067	21	2.1	21	83	8	54	22	2	11	63	1.38
33962497--33962524	3	9.3	3	100	0	56	67	0	0	32	0.91
33962529--33962568	21	1.9	21	84	0	53	67	7	5	20	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33963985--33964023	10	4.1	9	81	12	51	51	0	0	48	1.00
33963989--33964028	20	2.1	20	90	9	66	47	0	0	52	1.00
33966505--33966548	3	14.3	3	83	4	52	59	4	36	0	1.18
33966504--33966549	19	2.5	19	89	3	76	56	6	36	0	1.25
33987129--33987351	116	1.9	113	83	7	281	40	8	8	43	1.64
33989004--33989061	29	2.0	30	89	3	91	51	1	1	44	1.21
33999064--33999277	23	9.5	23	78	13	194	43	20	22	12	1.85
33999089--33999277	48	4.2	45	77	15	203	43	21	22	12	1.86
33999119--33999197	39	2.0	39	92	0	131	44	22	20	12	1.85
34002382--34002427	24	1.9	24	86	0	65	80	4	10	4	0.99
34002409--34002463	15	3.8	15	76	13	62	78	0	21	0	0.76
34002425--34002462	12	2.9	13	84	11	51	78	0	21	0	0.74
34002417--34002461	20	2.2	21	88	11	67	77	0	22	0	0.76
34002409--34002464	28	2.0	29	86	10	80	78	0	21	0	0.75
34003348--34003569	49	4.5	49	75	3	178	33	18	29	19	1.95
34003618--34003701	42	2.0	43	81	11	102	34	15	22	27	1.94
34003939--34004073	39	3.4	39	82	4	164	30	27	15	26	1.96
34004104--34004201	50	2.0	50	89	0	151	35	17	25	21	1.95
34004253--34004584	40	8.4	40	80	8	304	32	25	15	25	1.96
34004253--34004584	118	2.8	118	86	1	387	32	25	15	25	1.96
34008659--34008705	25	2.0	23	87	8	67	31	2	6	59	1.34
34013846--34013896	14	3.3	15	75	22	52	70	1	0	27	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34029838--34029884	22	2.1	22	84	7	60	61	2	0	36	1.08
34029842--34029892	21	2.5	21	76	20	54	64	1	0	33	1.05
34029863--34029910	14	3.7	13	77	5	53	60	2	0	37	1.09
34029856--34029906	27	1.9	26	88	11	77	64	1	0	33	1.05
34029843--34029917	22	3.2	22	72	20	62	64	1	0	34	1.02
34032747--34032771	2	12.5	2	100	0	50	0	0	48	52	1.00
34033748--34033788	21	2.0	21	90	9	66	56	9	0	34	1.32
34036094--34036231	61	2.3	62	82	6	167	41	21	18	18	1.91
34037618--34037789	89	1.9	89	94	2	301	29	16	18	36	1.92
34050260--34050316	29	2.0	30	83	13	75	35	1	15	47	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125