genome.fa.s6.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  53  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16249157--16249210	26	2.1	26	89	0	81	12	16	20	50	1.78
16254882--16254917	16	2.2	16	90	0	54	36	0	11	52	1.37
16257922--16257992	32	2.2	32	97	0	133	16	5	26	50	1.67
16267853--16267928	33	2.3	32	84	10	93	68	0	5	26	1.11
16273236--16273287	26	2.0	26	92	3	88	34	15	19	30	1.93
16275198--16275240	3	14.3	3	100	0	86	67	0	0	32	0.91
16275417--16275441	7	3.6	7	100	0	50	52	0	16	32	1.44
16285886--16285970	36	2.3	36	75	13	84	32	2	1	63	1.15
16292796--16292854	27	2.2	27	84	0	73	50	1	3	44	1.28
16296672--16296855	37	5.0	37	79	6	185	30	27	21	20	1.98
16306462--16306498	17	2.2	16	86	9	56	32	5	21	40	1.76
16308098--16308151	27	2.0	27	85	7	74	24	3	5	66	1.29
16308043--16308189	67	2.2	65	76	11	147	25	6	3	64	1.34
16308301--16308360	8	7.5	8	74	12	52	30	1	3	65	1.19
16308291--16308349	30	2.0	29	86	3	82	28	5	1	64	1.24
16323264--16323306	12	3.7	11	81	9	50	25	0	2	72	0.97
16327251--16327359	7	15.9	7	71	16	59	44	25	1	27	1.64
16327254--16327341	28	3.2	27	76	10	79	44	26	2	27	1.66
16327290--16327359	27	2.5	28	78	15	74	51	24	0	24	1.49
16327345--16327388	19	2.2	20	88	8	63	43	20	4	31	1.72
16327592--16327625	18	1.9	18	88	5	52	50	0	0	50	1.00
16330775--16330815	16	2.8	15	78	14	50	29	0	4	65	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16330795--16330843	17	2.8	18	78	12	57	24	0	8	67	1.18
16339081--16339136	21	2.7	21	80	5	60	16	44	19	19	1.87
16342569--16343173	99	6.1	99	80	4	636	17	32	17	33	1.93
16342580--16343143	297	1.9	297	84	3	769	17	32	16	33	1.93
16344060--16344234	88	2.0	88	93	2	298	26	24	16	33	1.96
16348788--16348813	12	2.2	12	100	0	52	34	19	0	46	1.50
16351691--16351737	19	2.5	19	100	0	94	44	0	29	25	1.54
16353167--16353310	34	4.2	34	78	3	155	37	32	11	18	1.87
16353163--16353310	68	2.2	68	92	0	251	37	33	11	18	1.87
16357333--16358017	342	2.0	342	95	0	1244	34	19	13	32	1.91
16362035--16362187	68	2.3	67	89	4	227	39	33	10	16	1.83
16363637--16363682	22	2.1	21	84	11	58	39	2	0	58	1.10
16363731--16363784	24	2.3	23	87	3	72	64	1	3	29	1.21
16367689--16367779	11	8.0	11	70	15	60	40	1	2	56	1.19
16367689--16367782	6	16.3	6	70	16	65	40	1	2	56	1.18
16367689--16367782	35	2.7	35	83	4	120	40	1	2	56	1.18
16367689--16367782	17	5.5	17	83	6	118	40	1	2	56	1.18
16368510--16368555	3	15.0	3	86	4	65	67	0	0	32	0.91
16369560--16369818	30	8.8	30	81	5	192	38	24	2	34	1.70
16369568--16370020	60	7.8	56	78	7	266	34	25	3	36	1.73
16369657--16369933	29	9.5	29	81	6	294	33	25	3	36	1.75
16369657--16369971	86	3.6	86	81	3	328	32	26	4	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16369654--16369971	29	11.0	29	79	6	265	32	26	4	36	1.76
16370246--16370430	97	1.9	97	88	2	282	27	16	18	37	1.92
16378099--16378139	18	2.3	18	83	8	57	48	2	0	48	1.14
16379165--16379203	18	2.2	19	86	9	55	58	0	20	20	1.39
16395442--16395492	21	2.4	20	75	18	50	31	0	5	62	1.19
16395793--16395864	35	2.1	35	86	5	101	58	6	6	27	1.50
16401148--16402258	452	2.4	458	92	2	1864	35	18	10	35	1.86
16402163--16402347	89	2.1	89	93	1	318	44	15	7	32	1.75
16404273--16404326	21	2.6	21	100	0	108	24	0	12	62	1.30
16404632--16404664	3	11.0	3	100	0	66	33	0	0	66	0.92
16406512--16406569	30	2.0	30	83	10	75	37	1	1	58	1.18
16411516--16411687	26	6.7	26	80	1	184	33	19	20	26	1.97
16411516--16411700	77	2.4	78	79	6	205	32	19	21	26	1.97
16418803--16419030	26	8.8	26	86	1	296	33	19	21	25	1.96
16421382--16421423	20	2.1	20	95	0	75	21	28	19	30	1.97
16423259--16423346	39	2.3	39	86	7	117	38	23	4	32	1.75
16428835--16428899	26	2.5	26	82	0	85	24	15	15	44	1.85
16429143--16429171	9	3.0	10	90	10	51	17	20	0	62	1.33
16430999--16431053	28	2.0	28	88	0	83	25	27	16	30	1.96
16431027--16431125	36	2.8	36	89	6	164	23	27	15	34	1.94
16433035--16433068	13	2.6	13	85	0	50	58	11	0	29	1.33
16440609--16440648	5	8.4	5	84	15	50	85	0	15	0	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16440608--16440654	18	2.3	19	79	20	51	80	4	14	0	0.85
16441131--16441177	2	23.5	2	100	0	94	51	0	48	0	1.00
16448020--16448049	14	2.1	14	93	0	51	30	13	16	40	1.87
16453380--16453852	236	2.0	236	97	0	883	35	24	11	29	1.90
16454591--16454648	31	2.0	28	83	10	71	62	5	12	20	1.49
16454997--16455055	23	2.6	23	81	5	75	42	18	27	11	1.85
16493603--16493726	39	3.2	39	96	1	230	37	10	15	37	1.82
16495984--16496038	27	2.0	27	96	0	101	16	41	9	32	1.80
16497445--16497497	27	2.0	27	88	0	79	24	18	0	56	1.42
16503166--16503211	18	2.6	18	83	10	51	36	4	0	58	1.18
16504996--16505309	157	2.0	157	98	0	610	25	27	17	29	1.97
16508046--16508079	9	3.8	9	84	0	50	2	5	2	88	0.70
16508045--16508079	18	1.9	18	94	0	61	5	5	2	85	0.81
16509803--16510092	98	3.0	96	78	12	233	46	14	5	34	1.66
16512588--16512654	33	2.0	33	97	0	125	32	10	8	47	1.69
16513063--16513107	22	2.1	21	87	4	63	53	0	6	40	1.27
16513657--16513699	18	2.2	20	88	8	63	41	0	0	58	0.98
16513889--16514073	90	2.1	89	82	5	221	30	7	18	42	1.78
16515491--16515543	16	3.4	16	74	10	65	54	0	1	43	1.11
16515491--16515550	9	7.6	9	72	25	55	55	0	1	43	1.10
16515478--16515548	30	2.4	30	95	2	126	50	0	1	47	1.09
16524262--16524328	23	2.9	23	90	2	107	19	32	23	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16524559--16524599	21	1.9	21	85	5	55	65	4	12	17	1.42
16537356--16537403	17	2.8	17	96	0	87	52	12	14	20	1.74
16537354--16537411	17	3.4	17	83	9	73	50	10	20	18	1.76
16538436--16538542	49	2.2	49	100	0	214	21	28	15	34	1.94
16539687--16539726	20	2.0	21	85	9	57	70	5	2	22	1.19
16549514--16549866	123	2.9	121	89	3	528	39	10	8	42	1.69
16549960--16549985	8	3.2	8	100	0	52	26	0	11	61	1.30
16549960--16549993	16	2.2	16	89	5	52	29	0	11	58	1.33
16556569--16556812	122	2.0	125	88	4	370	38	11	7	43	1.68
16567889--16567937	18	2.7	18	78	9	55	40	24	20	14	1.89
16578597--16578657	30	2.0	30	87	0	86	11	34	29	24	1.91
16578987--16579011	13	1.9	13	100	0	50	32	8	8	52	1.60
16584550--16584637	29	3.0	29	84	0	104	25	12	29	32	1.92
16588616--16588640	13	1.9	13	100	0	50	32	8	0	60	1.26
16590574--16590628	13	4.2	13	71	15	51	65	0	1	32	1.03
16595862--16596121	41	6.3	41	82	1	306	38	10	23	28	1.87
16595898--16596156	123	2.1	124	81	2	306	40	8	22	28	1.83
16595862--16596121	82	3.2	82	88	2	362	38	10	23	28	1.87
16602183--16602230	22	2.2	21	77	3	51	50	0	14	35	1.44
16603022--16603105	43	1.9	44	87	2	125	39	10	25	25	1.87
16602872--16603336	231	2.0	231	97	0	885	31	13	24	29	1.94
16603260--16603365	43	2.5	43	86	6	144	37	11	26	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16612258--16612675	209	2.0	209	96	0	773	39	17	16	26	1.91
16616871--16617063	25	7.7	25	78	8	178	21	17	24	37	1.94
16623341--16623411	35	2.0	35	97	0	133	7	16	18	57	1.61
16624696--16624743	21	2.1	24	81	11	57	62	6	12	18	1.50
16633072--16633122	25	2.0	25	84	3	66	25	17	25	31	1.97
16633295--16633336	21	2.0	22	85	4	59	11	4	14	69	1.34
16646655--16646772	3	38.7	3	74	18	61	70	3	3	22	1.17
16646646--16646765	45	2.7	45	81	8	138	70	5	4	20	1.22
16647493--16647560	35	1.9	35	84	0	91	16	26	29	27	1.97
16653215--16653257	13	3.2	13	84	12	52	16	2	4	76	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125