genome.fa.s6.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  83  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25881057--25881318	82	3.2	81	86	4	357	36	10	25	27	1.89
25881040--25881285	41	6.0	41	87	1	350	35	11	26	26	1.90
25881053--25881318	41	6.5	40	85	5	277	36	11	25	27	1.90
25882388--25882455	27	2.5	27	95	0	118	23	16	20	39	1.91
25882449--25882677	24	9.6	24	89	0	334	27	23	20	28	1.99
25886040--25886199	4	39.5	4	82	2	149	65	3	5	25	1.29
25886421--25886469	23	2.1	25	82	17	61	65	4	4	26	1.29
25886861--25886920	31	1.9	31	86	0	84	26	16	11	45	1.82
25887545--25887656	57	1.9	57	81	3	134	51	12	12	23	1.73
25887958--25888018	19	3.3	19	73	17	65	40	3	0	55	1.16
25891651--25891911	132	2.0	132	91	0	423	29	26	22	20	1.99
25898365--25898390	13	2.0	13	100	0	52	0	30	23	46	1.53
25898483--25898536	24	2.2	24	90	0	81	22	12	22	42	1.87
25900608--25900815	111	1.8	112	88	5	321	31	7	4	56	1.47
25902488--25902533	19	2.4	19	85	3	56	60	2	0	36	1.09
25902496--25902558	28	2.2	28	83	5	74	60	6	0	33	1.22
25902518--25902553	19	1.9	19	88	5	56	61	8	0	30	1.26
25902526--25902564	19	2.1	19	90	4	62	58	7	0	33	1.26
25902517--25902564	18	2.6	19	83	6	55	60	6	0	33	1.22
25902554--25902590	16	2.3	16	90	0	56	59	0	0	40	0.97
25902808--25902854	24	2.0	22	88	8	67	40	2	2	55	1.24
25906787--25906960	84	2.0	84	95	4	312	22	14	9	53	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25913629--25913666	14	2.6	15	87	8	60	52	13	7	26	1.67
25914046--25914091	24	1.9	23	86	8	65	54	4	4	36	1.40
25914157--25914190	13	2.6	13	85	0	50	58	11	0	29	1.33
25915112--25915175	23	2.7	23	83	9	76	10	12	1	75	1.13
25915119--25915164	23	1.9	25	91	8	78	13	13	0	73	1.09
25916094--25916163	12	6.2	11	80	12	72	74	1	5	18	1.09
25916094--25916159	6	11.3	6	80	6	57	74	1	6	18	1.10
25916096--25916139	22	2.0	23	86	4	63	72	2	4	20	1.13
25916094--25916159	18	3.8	17	80	13	64	74	1	6	18	1.10
25916182--25916221	21	1.9	21	84	0	53	27	5	0	67	1.11
25917845--25917883	14	2.7	15	80	8	53	56	10	7	25	1.59
25918234--25918278	24	1.9	23	90	4	72	55	4	4	35	1.40
25920258--25920327	5	12.8	5	80	14	61	72	1	5	20	1.12
25920259--25920327	12	6.2	11	80	9	70	73	1	5	18	1.10
25920259--25920323	6	11.3	6	80	3	55	73	1	6	18	1.11
25920261--25920303	22	2.0	22	86	9	61	72	2	4	20	1.14
25920330--25920368	20	2.0	20	84	0	51	25	7	2	64	1.33
25923424--25923462	14	2.7	15	80	8	53	56	10	7	25	1.59
25923841--25923886	24	1.9	23	86	8	65	54	4	4	36	1.40
25923952--25923985	13	2.6	13	85	0	50	58	11	0	29	1.33
25927450--25927498	17	2.8	18	80	17	59	67	0	4	28	1.09
25927450--25927505	16	3.3	17	80	11	53	66	0	7	26	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25927504--25927535	14	2.1	16	88	11	50	46	0	0	53	1.00
25933365--25933393	14	2.1	14	100	0	58	51	6	20	20	1.70
25940046--25940078	17	2.0	17	88	5	50	33	0	3	63	1.10
25940206--25940441	114	2.1	114	95	0	436	38	16	15	29	1.89
25940463--25940492	6	5.2	6	96	4	53	86	0	0	13	0.57
25940745--25940841	31	2.8	35	76	17	105	51	1	2	45	1.19
25940746--25940831	29	2.6	33	82	15	90	52	1	2	44	1.21
25952610--25952704	39	2.4	39	92	0	154	53	10	27	8	1.64
25956033--25956057	11	2.3	11	100	0	50	56	0	8	36	1.29
25958939--25958977	18	2.2	18	90	0	60	25	25	12	35	1.92
25961008--25961073	34	1.9	34	100	0	132	31	7	15	45	1.74
25961982--25962055	29	2.6	29	88	0	103	44	18	6	29	1.76
25962013--25962062	15	3.4	15	70	13	50	42	16	8	34	1.77
25962877--25962918	21	2.0	22	90	4	68	38	9	21	30	1.85
25968886--25968929	21	2.0	22	87	12	65	43	4	2	50	1.35
25971746--25971849	31	3.4	31	71	11	81	36	0	12	50	1.40
25972293--25972466	88	2.0	88	94	2	305	29	12	20	37	1.88
25974468--25974798	29	11.3	29	79	8	312	37	1	25	35	1.65
25974468--25974800	59	5.7	57	77	8	301	37	1	24	35	1.65
25974468--25974814	88	3.9	90	78	8	313	38	1	24	35	1.65
25974796--25974874	30	2.6	30	76	8	79	40	7	20	31	1.80
25975745--25975793	20	2.4	21	83	10	57	30	4	0	65	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25976901--25977076	85	2.1	85	83	2	219	23	22	17	36	1.94
25977110--25977284	85	2.0	86	82	1	208	22	22	16	38	1.93
25976788--25977398	207	2.9	207	84	1	810	23	22	17	36	1.94
25977200--25977570	171	2.2	172	88	1	539	23	23	15	37	1.93
25977368--25978156	210	3.8	210	85	2	951	24	22	15	37	1.93
25977371--25978156	420	1.9	419	85	1	1092	24	22	15	37	1.93
25978186--25978359	38	4.4	39	81	9	194	24	17	32	25	1.96
25978186--25978361	77	2.2	79	84	5	223	25	17	32	25	1.96
25978596--25978941	50	7.0	49	76	6	277	18	30	16	34	1.93
25978596--25978948	99	3.6	99	83	0	411	18	30	16	34	1.93
25979881--25979927	8	5.6	8	78	16	51	4	14	0	80	0.85
25979881--25979938	18	3.3	19	79	15	63	6	13	0	79	0.93
25985396--25985717	59	5.4	60	76	7	264	37	2	24	34	1.70
25985396--25985768	30	12.6	30	74	4	238	37	3	23	34	1.73
25986594--25986639	20	2.3	20	85	7	58	30	4	0	65	1.12
25986612--25986641	16	1.9	15	93	6	51	30	3	0	66	1.07
25992032--25992084	20	2.5	21	81	12	63	45	1	1	50	1.23
25992756--25992781	13	2.0	13	100	0	52	46	0	0	53	1.00
25995076--25995115	20	2.0	20	85	4	55	37	7	10	45	1.66
25996102--25996140	20	1.9	21	84	5	53	28	2	2	66	1.18
25996249--25996276	14	2.0	14	100	0	56	21	21	14	42	1.88
25999982--26000029	24	2.0	24	84	4	62	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26005366--26005426	21	2.6	23	80	17	72	49	1	0	49	1.10
26005366--26005442	26	3.2	25	76	14	72	50	1	0	48	1.09
26005525--26005558	14	2.3	14	90	10	50	41	0	2	55	1.15
26006967--26007035	33	2.1	32	91	2	111	40	17	2	39	1.64
26007427--26007502	28	2.7	29	76	13	77	22	13	14	50	1.77
26007424--26007528	29	3.7	29	76	13	85	22	16	11	49	1.77
26007423--26007598	57	3.1	58	79	4	171	23	17	10	48	1.78
26007486--26007601	29	4.1	28	77	8	117	25	16	7	50	1.71
26009344--26009560	23	9.4	23	82	2	247	35	3	12	47	1.60
26009344--26009560	69	3.1	69	86	0	299	35	3	12	47	1.60
26009639--26009740	36	2.9	35	78	15	113	28	16	21	33	1.95
26026202--26026248	24	2.0	24	88	12	71	53	8	10	27	1.64
26028261--26028298	11	3.5	11	83	16	53	7	18	15	57	1.62
26030079--26030242	30	5.5	30	87	0	220	36	4	19	39	1.71
26030084--26030275	60	3.2	60	81	5	176	36	4	20	38	1.72
26030086--26030271	90	2.1	90	85	6	252	36	4	20	39	1.72
26031250--26031287	17	2.2	17	86	9	51	78	2	0	18	0.86
26032384--26032864	23	20.9	23	85	1	586	34	3	14	46	1.63
26032922--26032999	36	2.2	36	88	0	111	25	15	26	32	1.95
26033035--26033071	3	12.0	3	94	5	65	64	0	0	35	0.94
26036654--26036696	20	2.2	20	87	8	61	20	2	4	72	1.14
26036642--26036679	11	3.2	12	85	14	53	23	0	2	73	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26036723--26036780	23	2.4	25	77	19	68	22	0	8	68	1.16
26044513--26045000	123	4.0	124	84	4	560	40	18	19	22	1.92
26044918--26045039	48	2.6	48	93	3	203	37	18	21	22	1.94
26044794--26045163	171	2.2	170	85	2	483	39	17	20	21	1.92
26044918--26045059	48	3.0	48	87	5	173	40	17	21	20	1.91
26044672--26045240	294	1.9	293	86	1	800	39	17	20	21	1.92
26045088--26045180	48	1.9	48	86	0	132	38	15	23	22	1.92
26044965--26045413	123	3.8	124	80	11	477	39	17	21	21	1.92
26045133--26045338	109	1.9	109	93	0	358	37	18	21	22	1.94
26045321--26045462	48	3.0	48	86	0	194	41	14	21	21	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125