genome.fa.s6.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  104  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31485828--31485967	34	4.1	33	82	6	147	13	5	12	68	1.36
31485930--31485979	23	2.1	24	92	3	84	8	2	18	72	1.19
31497557--31497680	23	5.4	23	86	0	160	12	19	21	45	1.83
31497557--31497680	46	2.7	46	89	1	178	12	19	21	45	1.83
31500579--31500612	2	17.0	2	100	0	68	0	50	0	50	1.00
31500612--31500652	2	20.5	2	100	0	82	48	0	0	51	1.00
31502491--31502522	16	2.0	16	93	0	55	84	0	15	0	0.63
31508585--31508624	22	1.9	22	90	10	66	77	2	2	17	0.99
31510123--31510184	29	2.1	29	85	5	81	59	6	14	19	1.56
31513124--31513281	79	2.0	79	92	0	262	30	15	15	38	1.89
31513475--31513503	13	2.2	13	100	0	58	65	6	20	6	1.40
31523057--31523337	135	2.1	135	99	0	553	20	31	13	34	1.91
31525378--31525411	15	2.2	16	89	5	52	32	2	0	64	1.08
31525538--31525683	54	2.7	55	85	2	213	40	8	8	42	1.66
31528674--31528715	16	2.6	17	82	14	54	64	0	4	30	1.14
31536575--31536601	2	13.5	2	100	0	54	51	0	0	48	1.00
31540704--31540780	26	2.9	26	72	12	66	45	9	16	28	1.78
31548430--31548467	8	4.8	8	93	0	67	34	39	0	26	1.57
31552910--31552940	6	5.2	6	96	0	53	35	19	29	16	1.93
31558424--31558490	27	2.5	27	90	0	98	29	16	34	19	1.94
31558864--31558898	18	1.9	18	94	0	61	25	0	14	60	1.35
31558918--31558995	23	3.3	23	74	15	61	24	0	10	65	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31559602--31559644	21	2.0	23	86	9	63	62	0	0	37	0.95
31561462--31561595	45	3.0	45	88	0	187	33	24	20	20	1.97
31561840--31561901	14	4.4	14	73	15	56	43	24	4	27	1.74
31563159--31563344	91	2.0	91	100	0	372	26	24	18	30	1.98
31565019--31565051	4	8.0	4	93	6	57	0	24	0	75	0.80
31565351--31565380	7	4.3	7	100	0	60	86	0	0	13	0.57
31574577--31574659	31	2.8	29	79	13	105	26	12	8	53	1.66
31574580--31574659	30	2.7	29	80	5	106	23	12	8	55	1.65
31574987--31575013	2	13.5	2	100	0	54	51	0	0	48	1.00
31576849--31576882	16	2.1	16	89	10	52	82	2	14	0	0.79
31578560--31578605	25	1.9	25	86	8	69	32	4	6	56	1.45
31585216--31585257	12	3.5	12	87	9	59	76	0	7	16	1.00
31585237--31585273	15	2.4	17	86	13	53	72	0	8	18	1.08
31585273--31585328	28	2.1	26	86	6	76	19	1	5	73	1.12
31586254--31586280	10	2.7	10	100	0	54	77	0	7	14	0.97
31587324--31587369	25	1.9	25	86	8	69	32	4	6	56	1.45
31588809--31589059	58	4.3	58	75	11	210	36	5	23	34	1.77
31588801--31588967	28	5.8	28	65	16	83	37	8	24	29	1.85
31588819--31589085	59	4.6	59	75	11	203	35	4	23	35	1.77
31588949--31589285	60	5.7	59	78	10	273	37	1	24	36	1.65
31589161--31589285	29	4.2	30	80	10	121	40	1	23	35	1.64
31588949--31589271	29	10.9	28	70	18	185	37	1	24	36	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31590073--31590149	32	2.4	31	80	6	82	45	2	2	49	1.29
31590064--31590156	45	2.1	45	83	4	116	43	2	2	52	1.25
31591235--31591730	206	2.4	204	82	2	591	23	22	18	35	1.95
31591539--31591900	170	2.1	169	87	0	499	23	23	17	35	1.96
31591344--31592106	376	2.0	376	95	0	1375	23	23	18	34	1.96
31591708--31592296	206	2.9	206	89	1	914	23	23	18	34	1.96
31594029--31594074	15	3.1	15	81	12	51	0	13	6	80	0.89
31599248--31599429	96	1.9	96	82	6	226	39	13	17	29	1.88
31599682--31599896	59	3.7	59	76	10	187	36	4	24	34	1.76
31599682--31599816	29	4.6	28	73	14	94	38	4	24	32	1.75
31599682--31599884	58	3.5	58	80	10	188	35	4	24	34	1.77
31599856--31600059	59	3.5	57	79	11	216	38	1	25	35	1.65
31599910--31600120	29	7.1	30	71	13	145	35	2	25	36	1.71
31599857--31600088	29	7.9	29	65	18	104	37	1	25	35	1.66
31599799--31600112	59	5.3	58	76	12	204	36	3	24	35	1.72
31601158--31601256	51	1.9	51	83	4	128	42	2	2	53	1.23
31602222--31602298	21	3.8	21	76	8	70	23	6	11	58	1.56
31602285--31602331	20	2.3	20	85	0	58	25	8	12	53	1.67
31603338--31603367	13	2.2	14	94	5	53	53	0	3	43	1.17
31604106--31604165	27	2.3	26	80	5	66	31	5	0	63	1.16
31604165--31604215	26	2.0	24	82	14	59	54	3	7	33	1.47
31604326--31604409	31	2.8	31	81	3	91	39	9	9	41	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31607804--31607842	15	2.5	15	83	4	51	51	0	0	48	1.00
31608627--31608666	20	2.1	20	90	9	66	55	0	0	45	0.99
31608627--31608684	19	3.1	19	80	7	57	50	1	1	46	1.22
31608651--31608696	16	2.6	18	86	10	60	43	2	4	50	1.34
31608604--31608823	113	1.9	118	82	9	283	49	2	5	42	1.40
31608902--31608934	17	1.9	18	88	11	52	45	0	9	45	1.35
31614716--31615003	45	6.8	45	80	8	238	41	19	30	8	1.81
31614871--31614965	36	2.6	36	98	0	181	44	17	26	11	1.83
31620025--31620114	29	3.1	29	68	9	94	20	11	8	60	1.57
31620045--31620133	28	3.1	28	68	9	90	16	12	8	61	1.55
31620020--31620141	57	2.1	57	100	0	244	20	9	8	61	1.53
31620061--31620150	28	3.2	28	66	12	76	20	7	7	64	1.45
31640254--31640325	21	3.4	21	79	11	76	22	33	11	33	1.89
31641673--31641735	30	2.1	30	82	2	74	23	6	12	57	1.58
31641852--31641888	13	3.1	13	81	18	53	59	0	0	40	0.97
31642126--31642300	86	2.0	87	84	6	230	49	5	21	23	1.71
31642626--31642692	16	4.2	16	82	0	62	28	20	1	49	1.58
31651449--31651475	3	9.0	3	100	0	54	0	33	0	66	0.92
31652192--31652225	3	11.7	3	93	6	61	0	32	0	67	0.91
31654498--31654582	30	2.9	30	98	1	163	31	16	20	31	1.94
31659514--31659736	110	2.0	110	93	1	385	30	12	22	34	1.91
31662899--31662931	16	2.1	16	100	0	66	60	6	6	27	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31662931--31663002	25	3.0	24	75	13	58	59	1	4	34	1.25
31669609--31669649	15	2.8	15	88	3	57	68	2	0	29	1.03
31669848--31669900	27	2.0	27	96	0	97	9	24	41	24	1.84
31670798--31670830	16	2.0	17	94	5	59	42	0	0	57	0.98
31672798--31672840	6	7.2	6	94	0	77	16	32	32	18	1.93
31673273--31673325	6	8.8	6	87	8	81	16	1	15	66	1.35
31676284--31676333	25	2.0	25	96	0	91	26	20	6	48	1.72
31676602--31676642	20	1.9	23	85	14	61	31	7	0	60	1.24
31676751--31676831	27	3.0	27	88	0	108	20	30	30	17	1.96
31677859--31677909	21	2.4	21	86	0	75	54	13	3	27	1.56
31679259--31679292	17	2.0	18	88	11	54	29	8	11	50	1.69
31680009--31680033	5	5.0	5	100	0	50	20	40	0	40	1.52
31682703--31682727	12	2.1	12	100	0	50	44	16	16	24	1.86
31684363--31684391	6	4.8	6	100	0	58	17	51	13	17	1.76
31685075--31685131	29	1.9	30	85	3	80	28	10	14	47	1.76
31686556--31686594	18	2.2	19	86	9	55	56	0	23	20	1.42
31688548--31688628	31	2.7	31	79	7	87	41	13	9	34	1.78
31700424--31700518	50	1.9	50	80	4	111	38	6	13	41	1.70
31700474--31700601	31	4.1	32	73	10	95	42	3	12	41	1.61
31703980--31704205	125	1.8	125	98	0	434	45	6	23	24	1.76
31707327--31707359	15	2.2	15	100	0	66	51	0	6	42	1.26
31708495--31708525	3	10.7	3	93	6	55	70	0	29	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31712100--31712392	143	2.0	143	96	1	534	38	12	17	31	1.87
31712143--31712422	143	2.0	141	82	4	323	42	12	15	29	1.84
31718728--31718788	24	2.5	24	86	0	77	27	11	9	50	1.70
31721113--31721161	2	24.5	2	100	0	98	51	0	0	48	1.00
31722231--31722360	68	2.0	65	82	10	156	39	0	0	59	1.09
31722384--31722430	17	2.6	18	78	18	53	59	0	0	40	0.97
31724144--31724192	15	3.3	15	85	0	71	40	18	16	24	1.90
31724127--31724195	30	2.3	30	89	0	102	42	18	13	26	1.87
31731362--31731387	4	6.5	4	100	0	52	23	23	26	26	2.00
31733298--31733359	30	2.0	31	82	14	76	45	1	3	50	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125