genome.fa.s6.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  4  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1088411--1088857	61	7.5	61	80	10	407	28	19	16	35	1.94
1088457--1088857	172	2.3	177	81	8	476	29	19	15	35	1.93
1088817--1088898	41	2.0	41	90	4	130	26	19	18	35	1.95
1088858--1088994	61	2.3	60	91	3	213	29	19	15	35	1.93
1088761--1088960	102	2.0	102	89	6	307	27	20	18	34	1.95
1092430--1092465	16	2.2	17	90	5	56	41	0	8	50	1.33
1092605--1093209	82	7.3	83	90	2	842	39	5	4	51	1.43
1092605--1093209	165	3.7	165	89	2	860	39	5	4	51	1.43
1092605--1093209	247	2.4	248	88	2	876	39	5	4	51	1.43
1095610--1095674	29	2.2	30	83	8	80	30	4	4	60	1.37
1096302--1096389	31	2.8	31	94	0	149	38	25	12	23	1.90
1096617--1096979	61	6.1	61	84	6	439	31	17	21	28	1.96
1096617--1096979	121	3.1	118	85	8	447	31	17	21	28	1.96
1097421--1097826	59	6.8	59	74	11	231	27	14	15	42	1.86
1097425--1097712	118	2.4	118	81	7	318	26	14	15	43	1.86
1097427--1097763	59	5.7	59	75	12	237	27	13	15	43	1.85
1097425--1097759	118	2.8	117	80	10	315	27	13	15	43	1.84
1097610--1097886	62	4.7	59	76	14	229	29	16	14	39	1.88
1097773--1097878	55	1.9	53	81	12	126	33	16	10	39	1.82
1098089--1098160	35	2.1	35	97	0	135	36	9	20	33	1.86
1098742--1098799	24	2.4	24	91	2	89	62	0	5	32	1.18
1103318--1103757	97	4.6	96	93	2	692	42	6	4	46	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1104916--1105272	170	2.1	171	87	4	517	38	5	3	52	1.42
1106303--1106418	30	3.9	29	85	5	151	25	6	4	63	1.36
1106339--1106382	23	1.9	23	86	9	63	27	6	2	63	1.31
1106303--1106418	60	1.9	59	91	1	187	25	6	4	63	1.36
1107220--1107851	60	10.6	61	76	9	356	40	16	16	26	1.89
1107220--1107964	59	12.6	59	75	11	512	40	17	16	25	1.90
1107542--1107833	113	2.5	114	79	8	286	41	17	16	24	1.89
1107326--1107964	173	3.6	177	76	11	485	40	17	16	25	1.90
1107657--1107985	113	2.9	114	81	7	353	42	17	13	25	1.86
1118889--1119013	57	2.1	59	88	5	182	33	8	28	28	1.87
1118941--1119091	81	1.9	81	90	2	241	34	11	29	25	1.90
1120419--1120443	2	12.5	2	100	0	50	48	0	0	52	1.00
1123090--1123129	20	2.0	20	100	0	80	20	20	15	45	1.86
1132375--1132512	31	4.6	31	70	16	101	47	12	15	24	1.79
1132426--1132514	31	2.9	31	84	0	115	51	8	13	25	1.70
1138982--1139077	41	2.3	41	96	0	174	29	6	28	36	1.81
1140658--1140694	14	2.6	15	83	8	51	48	2	0	48	1.15
1165117--1165152	18	2.1	18	90	10	58	61	8	0	30	1.26
1165461--1165505	16	2.9	15	77	6	54	42	4	2	51	1.34
1174959--1175017	24	2.5	24	81	10	59	37	5	0	57	1.21
1174977--1175136	58	2.8	56	82	12	175	45	1	1	51	1.17
1177199--1177430	75	3.1	75	84	2	279	30	22	25	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1181388--1181448	27	2.3	27	100	0	122	55	3	0	40	1.16
1192733--1192777	19	2.4	19	81	7	56	37	0	4	57	1.19
1198987--1199032	24	1.9	24	81	0	56	43	4	4	47	1.42
1199321--1199377	27	2.1	27	96	0	105	38	0	5	56	1.22
1201022--1201130	29	3.7	29	67	13	80	31	4	31	33	1.78
1200990--1201218	59	3.9	59	86	4	198	33	5	29	31	1.81
1201029--1201130	30	3.4	29	70	14	100	33	2	28	35	1.72
1201022--1201218	59	3.4	59	90	2	301	32	4	29	33	1.76
1201068--1201357	30	9.8	30	78	11	158	34	2	25	36	1.71
1201141--1201394	30	8.6	29	84	8	184	36	1	24	37	1.67
1201171--1201399	30	7.7	30	88	4	252	35	2	24	37	1.70
1203091--1203122	13	2.5	13	100	0	64	12	6	56	25	1.59
1203291--1203345	6	9.7	6	73	11	53	50	1	3	43	1.30
1203290--1203352	11	5.5	11	79	5	72	52	1	3	42	1.27
1203277--1203365	17	5.3	16	82	9	79	50	2	3	43	1.31
1203786--1204102	31	9.4	31	66	22	133	29	20	15	34	1.93
1203715--1204153	68	6.4	68	91	1	623	29	19	16	34	1.94
1216067--1216297	59	3.9	59	86	2	189	33	5	29	31	1.81
1216106--1216266	30	5.5	30	65	19	97	34	3	27	34	1.73
1216099--1216297	59	3.4	59	90	0	310	33	4	29	33	1.76
1216127--1216324	29	6.8	27	67	19	78	34	3	27	34	1.74
1216127--1216295	29	5.8	28	68	14	99	34	3	27	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1216099--1216356	118	2.2	116	82	5	304	33	3	28	34	1.76
1216289--1216418	30	4.3	30	92	1	208	33	3	23	39	1.71
1218102--1218146	13	3.5	13	93	0	81	15	6	53	24	1.66
1218210--1218271	14	4.5	14	68	11	56	22	14	30	32	1.94
1218314--1218369	6	9.7	6	78	7	62	46	3	3	46	1.37
1218314--1218376	23	2.7	22	83	9	81	47	3	3	46	1.34
1218317--1218366	17	2.9	18	94	5	86	46	4	4	46	1.40
1218317--1218366	18	2.9	17	91	5	82	46	4	4	46	1.40
1218297--1218384	23	3.9	22	76	10	70	47	3	2	46	1.31
1222132--1222171	16	2.5	16	88	11	64	37	0	0	62	0.95
1222348--1222377	16	1.9	16	93	6	53	73	3	0	23	0.98
1232275--1232341	23	3.0	22	80	4	62	43	0	1	55	1.09
1238210--1238283	36	2.1	36	89	0	112	28	17	21	32	1.96
1255393--1255457	24	2.7	25	79	9	64	35	6	3	55	1.40
1255949--1255988	16	2.6	16	85	14	57	60	0	0	40	0.97
1266436--1266536	31	3.3	30	71	15	91	28	0	11	59	1.33
1266957--1267170	106	2.0	106	100	0	428	25	15	31	27	1.96
1267287--1267313	14	1.9	14	100	0	54	14	7	33	44	1.73
1272087--1272145	30	1.9	31	89	3	93	52	3	1	42	1.28
1272125--1272165	15	2.5	17	80	11	59	65	0	0	34	0.93
1286343--1286381	17	2.2	19	81	13	55	58	0	0	41	0.98
1288150--1288208	31	1.9	30	83	10	75	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1290660--1290817	29	5.4	29	65	19	85	32	4	32	30	1.78
1290660--1290955	59	5.0	59	92	1	380	34	3	31	31	1.73
1290805--1290955	30	5.1	29	71	23	127	36	1	29	31	1.69
1292872--1292934	16	3.8	17	75	6	67	55	4	0	39	1.21
1292864--1292933	33	2.2	32	84	2	86	54	4	0	41	1.20
1292864--1292916	16	3.2	16	84	5	70	56	1	0	41	1.10
1292875--1292927	27	2.0	27	84	0	70	56	5	0	37	1.23
1293345--1293378	10	3.4	10	91	0	50	20	70	0	8	1.13
1296826--1296865	21	1.9	21	94	0	71	50	12	22	15	1.77
1297531--1297561	2	15.5	2	100	0	62	51	0	0	48	1.00
1305671--1305923	114	2.2	116	82	6	289	29	20	15	34	1.93
1307656--1307804	74	2.0	74	97	0	280	38	19	19	22	1.94
1309750--1309797	12	3.7	12	77	20	51	47	0	10	41	1.37
1309926--1310293	86	4.3	86	89	4	521	39	6	3	50	1.46
1309926--1310293	175	2.1	170	88	5	535	39	6	3	50	1.46
1312699--1312795	30	3.2	30	86	0	122	26	8	3	61	1.39
1313600--1313868	60	4.5	59	77	10	226	34	17	18	28	1.94
1313671--1313884	114	1.9	114	91	1	349	34	17	17	30	1.93
1313791--1313976	95	1.9	96	80	8	218	38	16	16	28	1.90
1313903--1314081	56	3.0	60	80	11	190	38	15	17	27	1.91
1321375--1321421	22	2.0	22	84	8	58	57	8	8	25	1.57
1323276--1323316	17	2.5	17	84	4	57	48	12	4	34	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1323744--1323783	15	2.5	16	84	8	55	35	2	0	62	1.09
1325180--1325350	85	2.0	85	97	0	324	31	23	5	38	1.79
1329428--1329469	21	2.0	21	85	4	57	64	11	2	21	1.38
1362929--1362973	7	6.4	7	97	0	72	15	62	0	22	1.33
1367621--1367688	31	2.2	31	82	7	77	35	7	10	47	1.66
1368727--1368751	2	12.5	2	100	0	50	0	0	48	52	1.00
1377009--1377129	23	5.2	23	82	11	156	11	25	23	39	1.88
1377009--1377129	48	2.6	46	87	7	172	11	25	23	39	1.88
1377094--1377168	39	1.9	39	88	0	114	13	22	20	44	1.86
1378057--1378093	10	3.9	10	79	13	51	40	10	8	40	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125