genome.fa.s6.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  105  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31740001--31740041	2	20.5	2	100	0	82	0	51	0	48	1.00
31743294--31743355	31	2.0	30	82	14	74	46	3	4	45	1.40
31751315--31751340	2	13.0	2	100	0	52	0	50	0	50	1.00
31753133--31753171	17	2.3	17	81	0	51	7	25	0	66	1.18
31754065--31754136	32	2.2	32	81	16	78	30	2	12	54	1.52
31755004--31755047	14	3.1	14	90	3	52	40	6	6	45	1.57
31755012--31755047	14	2.6	14	95	0	63	33	8	8	50	1.63
31763234--31763381	10	14.9	10	69	19	78	61	2	1	34	1.19
31763283--31763321	11	3.5	12	83	16	57	61	0	0	38	0.96
31763832--31763963	9	15.1	9	70	17	66	34	2	3	59	1.28
31763846--31763944	19	5.6	19	74	17	65	34	2	3	60	1.23
31763832--31763944	52	2.2	52	82	10	133	35	1	3	59	1.25
31763810--31763930	61	1.9	63	83	11	160	36	1	4	57	1.31
31763845--31763963	52	2.3	51	76	16	120	33	2	3	60	1.27
31763932--31763976	17	2.5	17	85	7	54	28	4	4	62	1.34
31764200--31764230	3	10.3	3	100	0	62	32	0	0	67	0.91
31765275--31765315	1	41.0	1	100	0	82	0	0	100	0	0.00
31768030--31768077	24	2.0	24	83	0	60	18	31	4	45	1.68
31771851--31771903	2	26.5	2	100	0	106	50	0	49	0	1.00
31772425--31772462	20	1.9	20	88	0	58	28	0	23	47	1.52
31789173--31789257	30	2.8	31	82	8	88	25	3	7	63	1.36
31802335--31802365	16	1.9	16	93	0	53	12	29	9	48	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31807160--31807199	12	3.4	12	87	12	57	32	0	0	67	0.91
31807916--31807974	24	2.4	24	78	13	66	57	3	1	37	1.25
31812778--31812824	14	3.4	14	76	5	51	57	0	2	40	1.11
31812833--31812878	23	2.0	23	91	0	74	34	4	6	54	1.46
31819468--31819532	31	2.2	29	86	5	85	35	7	10	46	1.68
31819468--31819555	30	2.9	29	83	5	86	34	6	12	46	1.68
31832431--31832492	33	2.0	32	87	9	92	27	11	20	40	1.87
31832659--31832742	34	2.4	34	88	2	123	28	15	1	54	1.48
31839687--31839750	32	2.0	32	100	0	128	34	21	18	25	1.96
31852961--31853041	19	4.4	19	79	13	89	49	6	0	44	1.27
31852954--31853040	36	2.4	36	96	1	156	49	5	0	44	1.26
31852970--31853048	18	4.6	16	69	17	59	53	5	0	41	1.23
31853626--31853680	24	2.3	24	100	0	110	38	20	12	29	1.89
31853924--31853951	11	2.5	11	100	0	56	25	0	0	75	0.81
31853976--31854023	25	2.0	24	84	12	62	58	10	0	31	1.32
31859966--31859994	7	4.1	7	100	0	58	31	0	27	41	1.56
31861679--31861743	19	3.5	18	73	12	60	44	1	3	50	1.26
31863400--31863470	34	2.1	34	94	0	124	32	26	5	35	1.80
31868731--31868780	21	2.4	21	80	3	57	38	4	4	54	1.38
31869381--31869422	17	2.4	18	81	18	54	35	0	2	61	1.09
31869472--31869556	19	4.4	19	73	16	68	30	2	2	64	1.18
31869476--31869540	30	2.2	28	86	10	87	27	3	1	67	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31870426--31870579	71	2.2	71	91	0	245	22	20	23	33	1.97
31891928--31891973	23	2.0	23	86	0	65	32	13	19	34	1.90
31892184--31892302	57	2.1	58	90	4	188	49	20	0	30	1.49
31892639--31892674	19	1.9	19	88	5	56	16	5	19	58	1.58
31895130--31895191	13	4.7	14	71	11	51	35	17	6	40	1.76
31902577--31902625	23	2.1	23	85	7	64	28	4	4	63	1.31
31903754--31903782	5	5.8	5	100	0	58	62	37	0	0	0.96
31904695--31904720	3	8.7	3	100	0	52	0	0	30	69	0.89
31905631--31905669	2	19.5	2	100	0	78	51	0	48	0	1.00
31908962--31909016	26	2.1	26	100	0	110	30	18	10	40	1.85
31911176--31911238	29	2.1	29	85	8	83	46	14	7	31	1.73
31911185--31911243	29	2.0	30	90	3	93	47	16	6	28	1.72
31915370--31915460	36	2.6	35	71	13	87	59	10	7	21	1.56
31921092--31921136	19	2.4	19	80	0	54	42	2	8	46	1.47
31924705--31924752	15	3.3	15	75	16	55	35	0	4	60	1.16
31927100--31927129	1	30.0	1	93	0	51	0	96	0	3	0.21
31930191--31930230	21	1.9	21	89	0	62	40	12	7	40	1.71
31930218--31930250	2	16.5	2	100	0	66	51	0	0	48	1.00
31933297--31933357	28	2.2	28	83	11	74	62	3	3	31	1.27
31933334--31933383	19	2.7	18	76	11	57	58	2	6	34	1.34
31933360--31933437	26	2.9	27	80	5	86	64	1	5	29	1.23
31933377--31933418	18	2.3	18	84	8	50	69	2	0	28	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31934473--31934530	23	2.5	23	81	15	66	55	10	1	32	1.44
31938754--31938784	1	31.0	1	100	0	62	0	0	100	0	0.00
31950806--31950850	17	2.6	17	96	0	81	73	8	2	15	1.18
31951133--31951192	31	1.9	31	83	6	77	28	20	5	46	1.71
31959300--31959345	19	2.4	19	79	13	58	43	8	4	43	1.55
31963146--31963194	16	3.1	16	80	14	57	44	2	0	53	1.12
31963229--31963275	20	2.3	20	92	0	76	23	0	12	63	1.28
31978342--31978382	13	3.2	13	82	0	55	51	12	7	29	1.66
31979351--31979411	27	2.2	27	80	11	70	44	3	1	50	1.28
31980226--31980250	7	3.6	7	100	0	50	12	0	0	88	0.53
31993099--31993142	22	2.0	22	86	0	61	50	2	2	45	1.27
31994325--31994381	27	2.1	28	81	15	66	56	5	14	24	1.59
31996615--31996671	28	2.0	28	89	0	87	35	5	22	36	1.77
31997075--31997135	32	1.9	32	89	0	95	55	4	0	39	1.21
31997546--31997580	6	5.8	6	100	0	70	31	51	0	17	1.45
32000013--32000048	4	9.0	4	90	0	54	19	2	27	50	1.62
32006741--32006781	18	2.2	19	91	8	66	12	0	34	53	1.38
32006746--32006783	18	2.1	18	100	0	76	10	0	34	55	1.34
32038929--32038977	19	2.4	22	73	20	59	46	0	6	46	1.27
32039196--32039403	110	1.9	110	93	3	319	34	17	18	29	1.94
32040988--32041021	17	1.9	18	88	5	52	47	2	0	50	1.16
32048655--32048759	52	2.0	52	90	0	165	21	25	9	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32052430--32052491	30	2.1	30	90	0	97	27	4	9	58	1.50
32054417--32054447	14	2.2	14	94	0	53	61	6	6	25	1.45
32055208--32055251	16	2.8	16	89	0	61	50	2	0	47	1.13
32059319--32059352	14	2.4	14	85	0	50	67	5	2	23	1.26
32059365--32059407	23	1.9	23	90	4	70	74	16	4	4	1.16
32060242--32060290	22	2.2	23	85	3	64	46	2	4	46	1.33
32060227--32060290	23	2.7	24	81	11	71	53	1	3	42	1.26
32061854--32061893	21	1.9	21	89	0	62	15	7	17	60	1.57
32061933--32061987	16	3.2	16	72	18	56	23	14	27	34	1.94
32077792--32077819	2	14.0	2	100	0	56	50	0	0	50	1.00
32079000--32079083	39	2.2	39	81	12	93	40	1	3	54	1.25
32079212--32079238	12	2.2	12	100	0	54	70	0	0	29	0.88
32082222--32082266	12	3.8	12	93	0	63	17	6	24	51	1.70
32082230--32082266	4	9.2	4	93	0	65	21	2	24	51	1.61
32087235--32087266	3	10.7	3	100	0	64	65	0	0	34	0.93
32090949--32091038	26	3.4	25	70	18	67	35	0	2	62	1.08
32091781--32091826	25	1.9	24	86	8	67	32	6	6	54	1.52
32095228--32095274	24	2.0	24	82	0	58	38	2	10	48	1.50
32097842--32097891	23	2.3	21	77	12	55	68	6	2	24	1.23
32098370--32098420	23	2.2	23	86	10	68	70	1	0	27	0.98
32100244--32100323	31	2.6	31	82	4	90	28	12	11	47	1.76
32100543--32100701	59	2.7	56	79	10	160	50	9	13	27	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32103640--32103667	2	14.0	2	100	0	56	50	0	0	50	1.00
32107732--32107783	15	3.5	15	75	19	54	57	11	1	28	1.44
32111209--32111256	20	2.4	20	82	10	62	75	0	4	20	0.97
32133218--32133252	2	17.5	2	93	0	61	48	2	0	48	1.16
32134908--32134937	13	2.4	13	94	5	53	63	0	0	36	0.95
32135211--32135253	22	2.0	22	86	9	61	27	0	0	72	0.85
32135237--32135281	24	1.9	23	86	4	63	28	2	2	66	1.15
32135302--32135335	15	2.3	15	89	0	50	17	0	2	79	0.86
32136312--32136339	7	4.0	7	100	0	56	57	0	28	14	1.38
32144189--32144228	6	6.7	6	100	0	80	32	32	0	35	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125