genome.fa.s6.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  95  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28562817--28562952	29	4.7	28	75	12	107	36	2	22	37	1.70
28563409--28563437	15	1.9	15	100	0	58	41	48	10	0	1.37
28564764--28564801	18	2.1	19	90	5	60	15	13	15	55	1.70
28565250--28565539	134	2.2	134	97	0	544	24	25	15	33	1.95
28565384--28565777	206	1.9	206	91	2	648	24	22	18	34	1.96
28577979--28578037	20	3.0	20	97	0	109	33	5	32	28	1.79
28578089--28578194	30	3.6	29	83	7	124	41	2	18	36	1.66
28578700--28578752	23	2.3	25	75	18	60	32	20	0	47	1.51
28579981--28580019	19	2.1	19	100	0	78	15	10	15	58	1.62
28580033--28580068	18	2.0	18	94	0	63	41	5	0	52	1.24
28583694--28583741	25	1.9	26	83	8	64	41	4	2	52	1.32
28592149--28592182	2	17.0	2	100	0	68	50	0	0	50	1.00
28596667--28596694	2	14.0	2	100	0	56	50	0	50	0	1.00
28597890--28597936	17	2.7	18	83	6	60	61	0	2	36	1.08
28598020--28598093	27	2.8	25	74	13	69	56	4	0	39	1.18
28598280--28598321	20	2.1	20	91	8	68	38	0	0	61	0.96
28602583--28602666	31	2.7	31	76	10	82	42	2	5	48	1.40
28607692--28607733	18	2.3	18	87	4	57	52	0	2	45	1.13
28617292--28617351	21	2.8	21	87	2	93	58	6	1	33	1.34
28617298--28617351	11	4.9	12	74	19	55	53	7	1	37	1.40
28620625--28620663	10	3.6	11	83	16	55	66	5	0	28	1.12
28620695--28620767	19	3.8	18	77	13	67	64	2	4	28	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28620625--28620762	9	14.3	9	67	17	64	60	3	4	31	1.33
28632424--28632479	23	2.4	24	82	8	71	7	17	19	55	1.65
28635121--28635148	2	14.0	2	100	0	56	50	0	0	50	1.00
28636057--28636117	33	1.9	31	86	6	86	42	16	11	29	1.83
28636334--28636384	20	2.5	21	82	14	63	68	1	0	29	1.00
28636350--28636397	24	2.0	25	83	4	62	62	4	2	31	1.26
28636747--28636787	2	20.5	2	85	9	57	48	2	0	48	1.14
28636886--28636928	20	2.2	19	83	4	50	25	0	2	72	0.97
28640341--28640386	2	23.5	2	95	4	85	0	50	0	50	1.00
28656896--28657101	43	4.8	43	90	0	313	35	11	21	31	1.89
28661148--28661190	23	1.9	23	90	4	70	58	2	9	30	1.42
28673879--28673912	3	11.0	3	93	6	59	64	0	2	32	1.08
28674981--28675023	18	2.5	17	88	11	61	32	2	2	62	1.20
28675043--28675083	21	1.9	22	85	5	57	21	2	4	70	1.18
28677468--28677512	22	2.0	22	83	8	56	35	17	6	40	1.76
28679643--28679673	16	1.9	16	93	0	53	29	0	3	67	1.06
28681165--28681247	41	2.1	41	91	6	136	31	9	4	54	1.54
28682154--28682178	8	3.1	8	100	0	50	52	0	12	36	1.39
28682797--28682835	17	2.3	17	82	13	53	79	2	17	0	0.84
28683211--28683247	16	2.2	17	90	4	58	72	10	0	16	1.10
28684175--28684207	16	2.0	17	88	5	50	45	9	0	45	1.35
28684370--28684426	17	3.5	17	76	13	57	49	5	1	43	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28684692--28684731	20	2.0	20	90	4	64	45	0	0	55	0.99
28695222--28695263	21	2.0	21	85	0	57	59	0	0	40	0.97
28695222--28695272	18	2.8	18	84	0	66	54	0	1	43	1.11
28696673--28696702	15	2.0	15	100	0	60	46	0	6	46	1.29
28702968--28703275	58	5.3	58	85	5	381	35	1	27	34	1.67
28702998--28703286	30	9.9	27	70	18	127	34	2	29	34	1.69
28703064--28703300	30	8.2	28	70	21	134	32	2	29	35	1.70
28702984--28703333	116	3.0	113	79	8	355	34	3	28	34	1.73
28705226--28705325	6	16.8	6	72	16	75	55	3	2	40	1.27
28705227--28705326	17	6.0	17	75	12	91	56	3	2	39	1.26
28705233--28705318	11	7.9	11	72	12	70	56	2	2	38	1.25
28705227--28705285	31	1.9	31	92	0	100	55	1	3	38	1.26
28705258--28705318	23	2.7	23	89	2	88	55	1	1	40	1.19
28705619--28705972	38	9.4	37	65	20	153	32	18	14	34	1.91
28705594--28706031	76	5.8	76	93	0	673	32	18	15	33	1.92
28705594--28706031	151	2.9	152	92	1	709	32	18	15	33	1.92
28718033--28718200	29	5.8	27	76	14	122	32	4	29	32	1.78
28718032--28718200	28	5.8	29	75	14	125	33	4	29	32	1.78
28718069--28718288	29	7.5	28	73	17	153	36	1	27	34	1.68
28718031--28718314	58	4.9	58	87	6	335	34	3	28	33	1.75
28718065--28718314	29	8.6	27	72	17	123	35	2	28	34	1.70
28718065--28718343	116	2.4	115	84	5	341	35	2	26	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28720253--28720329	6	12.8	6	73	14	61	55	2	1	40	1.22
28720254--28720316	17	3.9	16	80	16	76	58	1	1	38	1.17
28720260--28720322	11	5.9	11	75	14	60	58	1	1	38	1.17
28720254--28720330	17	4.6	17	79	11	72	57	2	1	38	1.21
28720780--28720822	17	2.5	17	84	3	50	20	25	2	51	1.60
28722202--28722277	29	2.7	29	83	2	100	26	7	2	63	1.35
28725594--28725630	19	1.9	19	89	10	58	51	5	29	13	1.63
28727983--28728018	17	2.1	18	89	5	56	27	5	5	61	1.41
28739907--28739969	29	2.3	27	81	10	74	47	4	0	47	1.23
28740449--28740502	9	5.5	10	73	18	51	64	1	0	33	1.04
28740471--28740516	18	2.6	18	82	6	58	65	2	0	32	1.05
28740481--28740539	29	2.1	28	87	3	82	59	5	0	35	1.20
28740988--28741066	23	3.4	23	73	3	79	29	1	1	68	1.05
28746742--28746813	10	7.6	10	76	14	64	62	1	1	34	1.13
28746753--28746822	36	1.9	36	88	5	106	65	2	2	28	1.21
28746742--28746831	26	3.2	28	78	16	105	63	2	2	32	1.19
28746820--28746871	19	2.7	20	75	6	61	67	1	7	23	1.27
28749006--28749044	20	2.0	20	89	0	60	30	0	2	66	1.05
28750750--28750817	22	3.0	22	76	4	82	48	4	2	44	1.38
28750742--28750819	23	3.4	23	78	3	95	48	5	2	43	1.38
28761282--28761336	22	2.5	22	85	2	76	43	9	5	41	1.59
28762511--28762558	19	2.6	18	83	9	60	68	2	0	29	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28762511--28762558	20	2.5	19	83	9	62	68	2	0	29	1.01
28762686--28762732	10	4.8	10	82	10	53	63	0	0	36	0.94
28762686--28762740	9	6.0	9	81	10	67	65	0	0	34	0.93
28762686--28762730	19	2.4	19	85	7	65	64	0	0	35	0.94
28767957--28768030	31	2.4	31	86	0	94	37	14	27	20	1.92
28777658--28777704	21	2.2	21	88	7	69	25	2	25	46	1.64
28782072--28782113	2	21.0	2	100	0	84	50	0	0	50	1.00
28784095--28784181	28	3.0	27	72	20	77	57	0	0	42	0.98
28784107--28784155	24	2.0	26	84	8	66	59	0	0	40	0.98
28784096--28784184	32	2.9	32	73	15	82	58	0	0	41	0.98
28791653--28791680	6	4.7	6	100	0	56	32	17	35	14	1.90
28798957--28799048	38	2.4	38	78	5	98	35	20	13	30	1.91
28799976--28800014	2	19.5	2	100	0	78	51	0	0	48	1.00
28800014--28800077	2	32.0	2	100	0	128	50	0	50	0	1.00
28802568--28802600	6	5.3	6	96	3	57	3	15	0	81	0.80
28803572--28803642	30	2.4	30	100	0	142	47	9	8	33	1.67
28804120--28804163	23	1.9	24	86	9	65	40	9	13	36	1.76
28804440--28804491	18	2.8	18	77	14	52	69	3	0	26	1.06
28813923--28813955	6	5.7	6	96	3	59	36	33	0	30	1.58
28818124--28818586	49	9.4	49	70	11	234	37	17	25	19	1.94
28818119--28818651	98	5.5	97	84	2	577	36	18	25	19	1.94
28826250--28826315	31	2.1	31	100	0	132	37	10	9	42	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28827123--28827209	43	2.0	43	100	0	174	13	16	20	49	1.79
28835979--28836005	1	27.0	1	100	0	54	0	0	100	0	0.00
28837868--28837900	16	2.1	16	100	0	66	30	0	18	51	1.46
28848148--28848224	17	4.4	17	76	15	77	42	0	2	54	1.14
28848156--28848247	37	2.5	34	83	11	103	48	0	2	48	1.13
28848138--28848224	11	7.5	11	72	18	61	42	0	3	54	1.17
28848148--28848255	6	18.0	6	75	14	89	48	0	1	49	1.18
28849773--28850085	162	1.9	163	88	3	472	25	16	12	46	1.81
28850166--28850289	30	4.2	28	83	9	140	34	27	4	33	1.78
28850335--28850564	30	7.7	29	67	14	119	31	29	6	33	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125