genome.fa.s6.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  58  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17679934--17680000	34	2.0	34	100	0	134	50	17	10	20	1.75
17681348--17681385	18	2.1	18	85	9	51	52	15	7	23	1.69
17681522--17681596	33	2.2	34	81	6	91	25	18	1	54	1.51
17683343--17683390	21	2.3	22	79	17	57	37	0	4	58	1.18
17690671--17690785	57	2.0	57	98	0	221	25	18	17	39	1.92
17690864--17690931	31	2.2	31	89	2	102	45	11	7	35	1.69
17700576--17700622	24	2.0	24	84	12	62	51	8	12	27	1.69
17708082--17708147	18	3.6	18	72	8	60	53	1	0	45	1.09
17708057--17708143	38	2.3	38	84	4	122	59	1	0	39	1.05
17711587--17711622	17	2.1	17	90	10	56	27	0	0	72	0.85
17719531--17719870	51	6.6	51	84	3	407	33	15	22	28	1.94
17726001--17726025	2	12.5	2	100	0	50	48	0	0	52	1.00
17726857--17727135	51	5.5	51	86	3	348	32	15	22	29	1.94
17726861--17727082	101	2.2	101	89	1	338	32	14	22	29	1.94
17733942--17733982	17	2.4	18	80	19	52	17	21	14	46	1.84
17738517--17738595	30	2.6	30	95	0	140	31	7	12	48	1.69
17739314--17739359	3	15.3	3	95	0	83	34	30	0	34	1.58
17743199--17743277	20	4.0	20	68	23	58	49	1	2	46	1.23
17743199--17743303	49	2.1	52	84	8	137	48	0	2	47	1.23
17743199--17743307	52	2.2	51	83	8	134	48	0	2	47	1.22
17744634--17744739	29	3.5	30	88	8	160	49	0	0	50	1.07
17744659--17744739	9	10.2	9	67	32	53	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17744700--17744741	20	2.0	22	90	9	70	52	0	0	47	1.00
17750121--17750165	21	2.1	21	84	8	56	20	13	4	62	1.48
17765682--17765722	21	2.0	21	85	0	55	39	14	12	34	1.84
17768111--17768343	126	1.9	122	82	8	292	53	10	3	31	1.53
17772616--17772657	21	2.0	21	95	0	75	14	28	2	54	1.52
17788457--17788507	19	2.5	21	78	18	63	54	1	3	39	1.30
17791923--17791983	25	2.4	25	83	0	68	50	1	1	45	1.21
17791998--17792057	29	2.1	27	84	6	75	68	1	1	28	1.09
17792004--17792055	14	3.6	14	82	12	61	71	0	0	28	0.87
17792016--17792055	20	2.0	20	95	0	71	72	0	0	27	0.85
17792266--17792309	19	2.3	19	84	11	54	61	0	0	38	0.96
17795708--17795844	60	2.2	61	81	10	147	34	9	11	44	1.73
17801213--17801297	20	4.3	20	78	3	91	63	15	16	4	1.47
17803666--17803694	14	2.0	15	93	6	51	0	41	0	58	0.98
17812016--17812054	18	2.1	19	86	13	55	56	2	2	38	1.27
17812413--17812494	30	2.7	30	84	3	112	35	13	18	32	1.90
17817587--17817724	70	2.0	70	91	0	222	36	23	13	25	1.92
17820982--17821018	18	2.1	18	89	0	56	24	27	0	48	1.51
17823907--17823931	13	1.9	13	100	0	50	40	0	0	60	0.97
17832284--17832539	127	2.0	127	100	0	512	32	10	27	28	1.91
17833767--17833849	41	2.0	42	97	2	159	21	26	24	27	1.99
17841953--17842014	14	4.4	14	72	13	56	24	1	30	43	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17842229--17842280	18	2.8	18	82	2	50	46	1	0	51	1.12
17844393--17844496	55	1.9	55	95	0	190	47	13	12	26	1.79
17844750--17844797	6	8.8	5	82	13	51	22	25	0	52	1.48
17844753--17844796	17	2.6	17	78	10	54	22	25	0	52	1.48
17846688--17846729	14	3.1	14	77	16	52	50	2	0	47	1.14
17848441--17848750	72	4.5	72	85	9	455	56	16	5	21	1.61
17848441--17848700	133	2.0	133	92	0	439	56	15	6	21	1.61
17849177--17849246	18	3.9	18	83	7	97	38	10	10	41	1.72
17856295--17856345	22	2.4	22	83	3	68	50	13	5	29	1.65
17858187--17858216	13	2.4	12	89	10	51	0	16	0	83	0.65
17859060--17859084	12	2.1	12	100	0	50	40	16	8	36	1.77
17861651--17861712	11	5.5	11	81	14	74	8	19	0	72	1.09
17862206--17862266	22	2.8	22	80	9	61	14	24	31	29	1.95
17862259--17862311	7	7.7	7	74	4	54	13	26	26	33	1.93
17862280--17862317	20	1.9	20	94	0	67	13	26	23	36	1.91
17868994--17869094	38	2.7	37	77	7	123	31	24	13	29	1.94
17869900--17869930	16	1.9	16	93	0	53	22	16	0	61	1.34
17875300--17875338	15	2.6	15	87	0	51	17	17	35	28	1.94
17875378--17875410	15	2.2	15	89	10	50	33	21	21	24	1.97
17878464--17878506	18	2.4	18	96	0	77	16	51	16	16	1.77
17892132--17892186	21	2.6	21	75	11	58	23	14	23	38	1.92
17898041--17898069	13	2.2	13	100	0	58	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17898154--17898197	22	2.0	22	95	0	79	45	6	0	47	1.29
17906530--17906554	13	1.9	13	100	0	50	24	16	12	48	1.79
17915150--17915180	16	1.9	16	93	0	53	61	0	16	22	1.34
17925743--17925787	16	2.6	18	82	10	58	13	8	0	77	0.98
17942062--17942101	21	1.9	21	89	0	62	0	32	12	55	1.38
17963905--17964143	4	59.8	4	81	1	156	49	15	25	10	1.75
17963875--17964144	12	22.5	12	75	7	163	48	14	25	11	1.77
17964363--17964562	26	7.7	26	78	2	177	27	14	25	34	1.94
17964768--17964802	10	3.5	10	88	0	52	8	2	51	37	1.47
17965218--17965316	39	2.5	39	91	0	162	25	6	16	52	1.66
17965360--17965422	32	2.0	32	87	0	90	33	9	17	39	1.82
17971803--17971901	39	2.5	39	91	0	162	24	5	17	53	1.63
17971947--17972009	32	2.0	32	90	0	99	30	9	19	41	1.83
17978007--17978067	17	3.5	17	79	2	68	49	11	18	21	1.78
17978497--17978543	24	1.9	25	91	4	78	0	36	0	63	0.94
17978497--17978538	12	3.5	12	81	12	59	0	35	0	64	0.94
17978516--17978551	15	2.4	15	90	9	56	2	33	0	63	1.08
17978496--17978550	24	2.3	24	84	6	76	3	34	0	61	1.13
17994373--17995420	525	2.0	525	98	0	2024	29	22	19	28	1.98
18000834--18000897	15	4.3	15	78	6	67	23	35	12	28	1.91
18005256--18005280	13	1.9	13	100	0	50	20	0	0	80	0.72
18006564--18006624	15	4.1	15	76	0	59	24	29	13	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18008837--18008885	19	2.6	18	84	12	55	28	10	2	59	1.41
18012175--18012205	16	1.9	16	100	0	62	32	16	12	38	1.86
18014238--18014361	63	2.0	63	95	0	221	26	21	12	39	1.89
18015506--18015579	25	3.0	25	75	0	85	32	18	17	31	1.95
18017382--18017469	43	2.0	43	100	0	176	22	35	4	37	1.75
18046563--18046620	3	19.3	3	79	13	66	70	0	29	0	0.87
18046563--18046620	12	4.6	12	85	12	80	70	0	29	0	0.87
18046688--18046714	10	2.7	10	100	0	54	29	29	29	11	1.91
18047017--18047060	17	2.6	17	85	0	52	20	15	9	54	1.68
18047029--18047061	17	1.9	17	93	0	57	15	15	12	57	1.65
18053913--18053948	14	2.6	14	90	0	63	47	0	16	36	1.47
18055537--18055693	80	2.0	79	93	1	269	28	14	21	35	1.93
18056126--18056228	48	2.1	49	83	5	138	50	15	10	23	1.75
18056141--18056262	48	2.5	48	87	0	163	54	13	8	23	1.65
18062137--18062289	80	1.9	80	91	0	252	29	15	20	34	1.93
18062780--18062925	48	3.0	48	85	3	186	52	13	9	24	1.71
18067277--18067326	21	2.4	21	86	6	66	34	20	22	24	1.97
18074406--18077733	216	15.6	216	81	6	3580	40	14	17	27	1.89
18078446--18078918	79	5.9	79	85	2	583	22	19	25	32	1.98
18081683--18081753	37	1.9	37	94	0	124	35	21	22	21	1.96
18081799--18081954	85	1.8	85	88	0	240	39	14	23	23	1.90
18081884--18081990	48	2.2	48	86	0	160	39	14	21	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18081720--18082208	257	1.9	256	90	2	784	37	17	22	23	1.94
18082059--18082218	85	1.9	85	89	0	248	36	16	25	21	1.93
18081938--18082972	209	4.9	209	86	3	1428	37	16	21	24	1.93
18082262--18082426	85	1.9	85	83	0	213	36	15	21	25	1.93
18082467--18082637	48	3.6	48	84	3	164	37	12	22	28	1.90
18082514--18082654	48	2.9	48	80	8	169	38	12	21	28	1.89
18081884--18083074	209	5.6	218	83	6	1386	38	16	21	24	1.93
18081938--18083074	429	2.7	427	86	3	1521	37	16	21	23	1.93
18082700--18082855	85	1.8	85	88	0	240	39	14	21	25	1.90
18082897--18083062	48	3.5	48	88	1	226	35	14	25	24	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125