genome.fa.s6.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  66  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20261060--20261160	14	7.1	14	70	19	57	46	0	2	50	1.16
20261124--20261149	8	3.2	8	100	0	52	38	0	0	61	0.96
20261081--20261173	30	2.9	33	78	18	106	45	0	1	53	1.07
20282604--20282660	27	2.1	28	83	3	71	29	1	5	63	1.27
20286196--20286238	22	2.0	22	81	9	52	34	0	13	51	1.42
20288894--20288926	15	2.1	16	88	5	50	36	18	0	45	1.49
20293456--20293500	23	1.9	23	90	4	72	66	2	8	22	1.30
20295034--20295218	86	2.1	89	82	6	218	34	14	8	42	1.76
20295075--20295284	86	2.4	87	80	10	202	38	14	9	38	1.78
20295375--20295429	9	5.6	10	74	8	51	65	1	1	30	1.13
20295378--20295429	19	2.7	20	75	6	61	65	1	1	30	1.14
20295622--20295773	10	16.3	9	66	20	55	28	5	1	64	1.23
20295669--20295773	18	5.8	17	78	11	95	29	2	1	65	1.17
20295670--20295774	37	2.9	34	77	13	88	29	2	1	65	1.17
20296767--20296831	31	2.1	31	83	11	80	60	0	0	40	0.97
20298282--20298346	32	2.0	32	81	0	76	18	20	36	24	1.94
20302303--20302354	23	2.3	23	83	6	70	46	17	7	28	1.75
20303585--20303650	15	4.6	14	77	20	66	10	13	1	74	1.15
20303577--20303651	15	4.8	15	76	15	64	9	13	1	76	1.09
20307878--20307971	38	2.5	38	76	8	102	31	25	13	28	1.94
20307961--20308018	26	2.3	26	84	3	73	32	18	22	25	1.97
20311175--20311240	17	3.9	17	79	0	69	18	21	12	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20312381--20312434	26	2.1	26	89	0	81	25	18	24	31	1.97
20317633--20317692	9	7.2	8	78	14	52	1	28	0	70	0.97
20317640--20317692	17	2.9	17	77	20	54	0	28	0	71	0.86
20317643--20317690	22	2.2	22	85	7	62	0	31	0	68	0.90
20317643--20317690	15	3.3	15	75	13	55	0	31	0	68	0.90
20317633--20317692	25	2.4	26	81	10	72	1	28	0	70	0.97
20332160--20332199	20	2.0	20	100	0	80	60	25	5	10	1.49
20346622--20347161	268	2.0	268	93	0	929	31	20	18	30	1.96
20351579--20352166	294	2.0	294	97	0	1104	26	16	15	40	1.89
20355191--20355290	47	2.1	47	98	0	191	26	12	10	52	1.70
20359169--20359247	41	1.9	41	92	0	131	27	15	17	39	1.90
20363331--20363379	15	3.2	15	82	2	53	0	22	0	77	0.77
20363333--20363381	26	1.9	26	91	4	82	0	22	0	77	0.77
20378661--20378705	16	2.9	16	83	6	56	22	0	2	75	0.91
20378661--20378705	5	8.6	5	80	9	54	22	0	2	75	0.91
20380449--20380488	21	1.9	21	85	10	55	25	5	45	25	1.73
20381537--20381562	2	13.0	2	100	0	52	50	0	0	50	1.00
20383490--20383551	21	3.0	20	80	15	63	64	3	1	30	1.19
20385814--20385860	10	5.0	9	80	19	60	0	21	0	78	0.75
20385814--20385860	19	2.5	18	83	16	60	0	21	0	78	0.75
20385814--20385860	13	3.3	13	83	16	58	0	21	0	78	0.75
20395701--20395806	23	4.7	23	81	9	92	46	15	3	34	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20395701--20395805	46	2.3	46	79	9	117	45	15	3	35	1.64
20395724--20395811	22	3.9	22	83	4	104	47	15	4	31	1.66
20395892--20396019	66	1.9	66	88	3	195	41	28	13	17	1.86
20396268--20396566	36	8.2	36	86	1	402	38	24	8	29	1.84
20396268--20396566	72	4.1	72	90	0	445	38	24	8	29	1.84
20419485--20419519	18	1.9	18	88	11	54	51	25	0	22	1.48
20427888--20427936	24	2.0	24	96	0	89	48	12	18	20	1.79
20443322--20443379	26	2.2	27	87	3	82	39	24	15	20	1.91
20457921--20457999	41	1.9	41	100	0	158	34	10	31	24	1.88
20468685--20468739	28	2.0	28	92	0	92	30	18	27	23	1.97
20476780--20476820	18	2.4	17	88	12	57	19	17	12	51	1.76
20477399--20477438	11	3.3	12	89	6	55	77	0	22	0	0.77
20477406--20477439	12	2.6	14	81	18	54	79	0	20	0	0.73
20480961--20481032	36	2.0	36	100	0	144	19	16	25	38	1.92
20489239--20489303	34	1.9	34	90	0	103	33	15	24	26	1.95
20502216--20502247	15	2.1	16	88	11	50	12	6	3	78	1.06
20507949--20508025	39	2.0	39	94	0	136	14	24	11	49	1.76
20508201--20508233	16	2.1	16	100	0	66	24	6	45	24	1.75
20513151--20513189	8	4.9	8	80	0	51	58	23	2	15	1.49
20523133--20523180	17	2.8	17	81	6	51	58	8	14	18	1.61
20523147--20523180	18	1.9	18	88	5	52	55	5	14	23	1.61
20527653--20527677	13	1.9	13	100	0	50	40	8	28	24	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20531796--20531828	16	2.1	16	88	11	50	0	18	0	81	0.68
20538672--20538754	28	2.9	28	89	1	112	31	4	24	39	1.76
20551079--20551174	28	3.4	29	82	5	99	34	28	11	26	1.91
20552860--20553340	245	2.0	246	89	2	752	38	10	8	43	1.69
20552860--20553346	123	4.0	123	89	2	739	38	10	8	43	1.69
20596212--20596274	24	2.6	24	84	0	81	49	9	14	26	1.74
20598210--20598260	24	2.1	24	88	0	75	58	9	7	23	1.56
20601756--20601816	23	2.6	23	84	2	68	40	3	8	47	1.49
20602111--20602192	32	2.5	34	78	11	91	51	9	4	34	1.56
20603933--20603976	5	8.2	5	80	14	52	54	0	20	25	1.45
20603934--20603976	11	3.9	11	88	8	61	53	0	20	25	1.46
20611367--20611463	51	1.9	51	89	0	149	22	28	19	28	1.98
20614765--20614804	16	2.6	15	92	4	62	30	15	20	35	1.93
20625392--20625465	24	3.1	24	84	3	96	56	0	39	4	1.18
20625399--20625465	12	5.5	12	77	15	75	56	0	40	2	1.14
20625917--20625995	17	4.6	18	71	13	53	24	16	13	45	1.84
20628120--20628282	50	3.3	50	84	1	211	33	23	14	27	1.94
20630367--20630482	44	2.6	43	83	6	126	25	19	15	39	1.91
20631481--20631734	45	5.7	45	71	13	156	26	18	14	40	1.88
20631486--20631729	88	2.8	86	80	13	252	26	18	14	40	1.88
20634224--20634566	52	6.6	52	85	3	399	34	22	16	27	1.95
20634224--20634566	156	2.2	157	84	4	444	34	22	16	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20640116--20640164	16	3.0	15	75	18	53	0	22	0	77	0.77
20659524--20659562	12	3.2	12	88	0	51	64	0	35	0	0.94
20669343--20669382	20	2.0	20	85	9	55	65	0	2	32	1.06
20669361--20669399	15	2.5	16	83	4	53	58	0	2	38	1.12
20674021--20674063	18	2.4	18	85	14	54	58	2	2	37	1.24
20676066--20676546	158	3.0	158	91	0	773	29	24	23	22	1.99
20676669--20676693	2	12.5	2	100	0	50	52	0	0	48	1.00
20682891--20682943	21	2.5	21	90	0	88	30	18	24	26	1.98
20683675--20684079	158	2.6	158	90	0	623	30	24	22	23	1.99
20687810--20687928	60	2.0	60	96	0	220	15	19	15	48	1.81
20690321--20690363	18	2.4	18	85	14	54	58	2	2	37	1.24
20693300--20693352	28	1.9	27	84	3	70	39	0	5	54	1.24
20694073--20695158	83	13.4	82	78	10	907	36	14	6	41	1.72
20694073--20695157	167	6.7	166	80	9	1053	36	14	6	42	1.72
20694500--20694659	84	1.9	82	88	2	239	37	16	5	40	1.71
20694585--20694729	70	2.1	70	89	2	222	36	17	6	38	1.77
20694073--20695125	250	4.3	235	78	10	921	36	15	6	41	1.72
20694653--20695157	157	3.1	164	79	7	459	36	13	6	43	1.70
20694343--20694969	310	2.0	305	82	7	764	37	15	6	40	1.74
20694891--20695157	87	3.2	84	82	5	322	35	11	5	46	1.65
20694891--20695169	84	3.3	82	80	10	310	35	11	6	46	1.66
20695595--20695627	17	1.9	17	88	11	50	24	6	0	69	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20708431--20708457	12	2.2	12	100	0	54	18	0	33	48	1.49
20715653--20715702	24	2.1	24	88	0	73	4	28	8	60	1.43
20732190--20732222	17	1.9	17	88	11	50	18	6	3	72	1.18
20735267--20735320	26	2.1	26	82	0	63	35	22	16	25	1.95
20737922--20737961	21	1.9	21	90	10	64	67	10	15	7	1.41
20739715--20739750	12	3.0	12	83	0	54	16	2	8	72	1.21
20743136--20743192	3	19.0	3	85	0	69	28	8	0	63	1.24
20743642--20744142	153	3.3	150	87	3	675	43	4	9	41	1.59
20745179--20745654	243	2.0	238	90	2	756	37	6	13	42	1.71
20757626--20758203	42	13.8	42	88	2	831	20	18	25	35	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125