genome.fa.s6.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  65  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19891525--19891624	15	6.7	15	80	8	96	32	16	9	43	1.79
19895629--19895680	21	2.5	21	81	6	61	28	28	15	26	1.96
19899873--19899925	21	2.5	21	93	0	88	49	11	7	32	1.67
19905845--19905883	3	12.7	3	94	5	69	69	0	0	30	0.89
19906952--19907022	20	3.6	19	70	14	54	35	23	22	18	1.96
19906951--19907029	7	11.7	7	76	8	65	34	24	24	17	1.96
19906948--19907042	40	2.4	40	89	0	145	37	22	22	17	1.94
19906949--19907035	27	3.3	25	79	9	84	36	22	22	17	1.94
19906991--19907063	27	2.7	27	85	4	94	36	21	20	20	1.95
19906978--19907042	7	9.7	7	81	9	55	36	23	21	18	1.95
19907048--19907108	22	2.7	22	76	5	68	36	24	24	14	1.93
19912435--19912477	15	2.6	17	82	10	54	23	39	20	16	1.92
19913119--19913148	3	9.7	3	92	7	51	70	0	0	30	0.88
19914205--19914303	20	4.8	20	79	6	92	35	25	20	19	1.95
19914207--19914285	27	2.9	27	84	1	104	36	26	18	17	1.94
19914221--19914299	41	2.0	40	87	2	113	36	25	17	20	1.94
19914206--19914326	7	18.6	7	73	14	89	33	24	23	19	1.97
19914294--19914331	11	3.5	11	88	0	58	26	23	31	18	1.97
19924236--19924391	59	2.6	59	90	6	244	45	14	8	31	1.75
19924287--19924379	29	3.2	29	63	3	78	44	15	8	32	1.76
19924383--19924412	14	2.1	14	93	0	51	70	3	6	20	1.25
19924871--19925092	106	2.1	106	77	4	230	27	22	10	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19930897--19930927	12	2.6	12	94	0	53	12	12	19	54	1.70
19940541--19940585	14	3.3	14	80	19	51	37	2	0	60	1.09
19940630--19940665	16	2.2	16	100	0	72	38	11	8	41	1.71
19951446--19951479	14	2.5	13	86	9	50	67	2	29	0	1.05
19953556--19953611	29	1.9	29	96	0	103	28	26	23	21	1.99
19957881--19957927	24	2.0	24	83	8	60	14	6	27	51	1.67
19959499--19959547	20	2.5	20	80	12	57	48	14	4	32	1.62
19960484--19960540	25	2.2	25	84	9	71	70	3	10	15	1.29
19960537--19960610	26	2.8	26	82	8	71	74	5	1	18	1.08
19960563--19960624	13	4.7	13	78	8	63	75	3	0	20	0.94
19960563--19960624	14	4.8	12	75	20	54	75	3	0	20	0.94
19967551--19967581	14	2.3	13	94	5	53	38	9	0	51	1.35
19974128--19974173	18	2.6	18	96	0	83	26	13	26	34	1.92
19979157--19979202	24	1.9	23	86	8	65	56	6	4	32	1.45
20008626--20008712	20	4.3	20	81	7	79	48	11	5	34	1.63
20008634--20008721	40	2.2	40	82	8	108	47	12	6	32	1.68
20023016--20023073	30	1.9	30	82	0	71	43	24	12	20	1.86
20042381--20042413	11	2.8	12	86	9	50	48	42	3	6	1.43
20049399--20049453	28	2.0	29	85	7	78	41	29	3	25	1.72
20057267--20057325	29	2.0	30	83	6	77	30	3	15	50	1.60
20058162--20058202	17	2.4	16	80	11	55	34	0	2	63	1.08
20059047--20059092	21	2.2	21	84	7	58	54	8	28	8	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20060370--20060405	12	2.8	13	83	8	56	75	0	22	2	0.94
20060370--20060403	6	5.5	6	86	6	50	76	0	20	2	0.92
20078859--20078893	7	5.0	7	96	0	61	42	25	0	31	1.55
20084608--20084677	36	1.9	36	85	0	95	37	25	10	27	1.88
20086543--20086611	23	2.9	23	72	20	61	42	23	4	30	1.73
20086615--20086695	29	2.7	29	81	11	92	49	14	4	30	1.65
20088361--20088401	13	3.2	13	89	3	57	34	2	0	63	1.08
20088438--20088507	36	1.9	36	85	0	95	35	25	10	28	1.88
20095232--20095262	14	2.2	14	94	0	53	54	9	0	35	1.33
20098328--20098377	23	2.1	24	85	10	68	36	2	0	62	1.07
20102896--20102927	16	2.0	16	100	0	64	43	25	12	18	1.85
20116354--20116395	14	3.2	12	84	15	57	42	0	16	40	1.48
20116352--20116394	15	3.1	14	87	12	63	44	0	13	41	1.44
20116789--20116972	90	2.1	89	88	1	269	25	10	27	36	1.89
20124498--20124539	21	2.0	21	95	0	75	50	0	7	42	1.30
20126907--20126980	35	2.1	35	89	0	112	64	6	1	27	1.26
20136271--20136572	158	1.9	158	89	2	471	43	12	4	39	1.64
20137596--20138241	146	4.4	149	85	6	776	45	10	2	41	1.51
20137988--20138241	137	1.8	138	88	5	390	45	9	3	41	1.53
20139153--20139379	42	5.4	42	91	0	355	36	23	18	21	1.95
20139782--20139826	10	4.5	10	81	10	56	4	11	2	82	0.91
20139783--20139824	22	1.9	22	85	0	57	4	9	2	83	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20139788--20139827	21	2.0	20	90	5	62	2	10	2	85	0.80
20148027--20148081	4	13.8	4	88	0	74	43	1	30	23	1.64
20151472--20151786	159	2.0	160	92	2	526	43	12	5	38	1.66
20152784--20153148	52	7.2	52	66	16	174	43	10	3	42	1.56
20152791--20153297	153	3.4	150	85	7	584	43	9	4	43	1.55
20153041--20153297	139	1.9	138	85	5	358	43	8	4	42	1.56
20153716--20153755	3	13.3	3	83	0	53	62	0	5	32	1.17
20154917--20154947	15	2.0	16	93	6	55	64	0	3	32	1.09
20157982--20158053	17	4.2	17	74	0	63	37	4	4	54	1.39
20158276--20158335	25	2.4	25	94	0	102	20	46	11	21	1.82
20159918--20160061	29	4.9	29	75	11	102	34	24	3	37	1.72
20159930--20160572	59	10.9	59	80	7	449	33	27	4	34	1.78
20159969--20160459	29	16.7	29	68	18	234	34	27	4	33	1.78
20159940--20160592	118	5.6	115	77	10	515	33	27	5	33	1.79
20159940--20160590	177	3.7	176	80	5	629	33	27	5	33	1.79
20159940--20160572	29	21.5	29	67	22	134	33	27	5	33	1.79
20162733--20162757	7	3.6	7	100	0	50	64	12	12	12	1.51
20163062--20163093	5	6.2	5	92	7	55	78	0	21	0	0.76
20163640--20163759	41	2.9	39	80	11	134	29	8	9	53	1.62
20164114--20164148	14	2.3	15	90	9	54	25	0	0	74	0.82
20164325--20164378	3	18.0	3	96	0	99	33	1	0	64	1.04
20164335--20164426	9	10.6	8	78	12	69	27	0	5	67	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20178774--20178818	6	7.5	6	94	0	81	33	28	0	37	1.58
20178768--20178818	18	2.8	18	90	0	84	35	25	0	39	1.56
20178768--20178818	12	4.2	12	92	0	75	35	25	0	39	1.56
20178832--20178880	25	1.9	26	87	4	73	26	0	8	65	1.20
20180266--20180290	9	2.8	9	100	0	50	24	56	12	8	1.62
20180612--20180865	127	2.0	127	100	0	508	32	26	14	26	1.94
20181047--20181282	23	10.3	23	91	0	328	45	13	5	36	1.65
20184453--20184496	15	3.0	14	78	21	54	13	2	2	81	0.88
20186765--20186806	18	2.4	18	84	4	50	61	11	9	16	1.55
20189509--20189552	22	2.0	22	100	0	88	22	22	9	45	1.80
20201223--20201554	51	6.5	51	83	4	404	31	14	22	31	1.94
20207639--20207682	20	2.1	21	83	4	54	47	2	13	36	1.56
20208571--20208840	51	5.2	51	84	2	317	33	14	21	30	1.93
20217441--20217561	38	3.3	39	76	11	121	36	24	9	28	1.88
20217566--20217618	26	2.0	26	85	0	70	28	22	20	28	1.99
20219488--20219841	194	1.8	194	83	1	476	33	16	23	26	1.96
20229619--20229809	97	2.0	97	91	0	310	34	14	20	30	1.93
20230056--20230358	30	10.4	30	72	10	130	35	3	26	34	1.73
20230120--20230340	28	7.7	29	80	10	202	35	4	25	34	1.75
20230062--20230340	29	9.6	29	78	8	219	36	3	25	35	1.73
20230062--20230341	116	2.4	114	81	5	305	36	3	25	35	1.73
20230129--20230377	88	2.8	86	82	6	261	34	4	26	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20232055--20232098	23	1.9	23	90	0	70	50	0	4	45	1.22
20232074--20232117	17	2.6	16	82	10	52	59	6	0	34	1.24
20232060--20232098	11	3.5	11	82	6	51	53	0	2	43	1.14
20232060--20232106	23	2.0	23	84	8	60	55	4	2	38	1.31
20252717--20252749	17	1.9	17	93	0	57	78	0	18	3	0.87
20256591--20256697	40	2.7	40	88	0	160	35	21	25	17	1.95
20258576--20258628	19	2.8	19	97	0	97	20	5	3	69	1.25
20261060--20261088	14	2.1	14	100	0	58	48	0	6	44	1.29
20261067--20261140	22	3.4	21	67	14	60	45	0	2	51	1.15
20261071--20261154	44	2.0	42	92	4	141	47	0	2	50	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125