genome.fa.s6.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  21  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6458644--6458793	40	3.5	40	71	23	124	35	18	14	31	1.91
6458684--6459035	52	7.5	50	65	25	187	34	18	15	32	1.91
6458828--6458977	40	3.5	40	69	23	124	36	20	12	30	1.90
6467851--6467928	30	2.6	31	84	11	101	38	3	23	34	1.73
6467912--6467942	15	2.1	15	100	0	62	35	0	19	45	1.51
6467882--6467973	45	2.0	45	89	4	141	34	3	22	39	1.71
6467852--6468002	75	2.0	75	87	2	214	34	3	23	38	1.72
6467927--6468003	30	2.6	30	87	4	111	32	2	23	41	1.68
6469045--6469111	11	6.0	11	76	10	57	55	4	0	40	1.20
6469023--6469111	28	3.2	27	80	10	83	53	3	0	42	1.17
6469027--6469131	45	2.3	45	86	3	140	55	3	0	40	1.25
6469070--6469125	17	3.4	17	85	7	71	53	3	1	41	1.29
6469046--6469111	6	11.7	6	73	12	59	54	4	0	40	1.21
6470128--6470190	24	2.6	24	84	0	90	49	12	14	23	1.78
6476809--6476885	34	2.5	29	78	17	77	44	0	1	54	1.08
6476850--6476961	13	8.6	14	75	18	59	46	0	0	52	1.06
6476865--6476962	28	3.8	28	68	21	86	48	0	1	50	1.07
6476865--6476961	13	7.4	14	73	20	84	48	0	1	50	1.07
6476912--6476991	15	5.2	15	72	19	58	52	1	1	45	1.16
6478102--6478160	6	9.8	6	75	14	59	40	6	0	52	1.28
6478102--6478159	17	3.6	17	81	13	86	39	6	0	53	1.28
6479250--6479283	17	1.9	18	88	5	52	55	14	14	14	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6479331--6479357	8	3.4	8	100	0	54	74	0	14	11	1.08
6487435--6488093	205	3.2	205	89	3	985	37	20	22	19	1.95
6488446--6488493	6	7.8	6	77	13	53	41	6	0	52	1.27
6488435--6488492	17	3.6	17	77	13	68	39	5	1	53	1.33
6488500--6488532	12	2.8	12	86	4	50	57	3	0	39	1.14
6490357--6490508	58	2.6	58	82	8	180	35	24	3	36	1.74
6490368--6490477	29	3.8	29	79	6	114	38	24	1	35	1.66
6490375--6490713	59	5.7	59	76	9	257	34	23	3	38	1.71
6490401--6490507	29	3.6	29	77	14	103	33	24	3	38	1.73
6490553--6490647	29	3.2	29	68	21	79	36	24	2	36	1.67
6491580--6491814	87	2.7	87	89	2	335	39	14	16	29	1.88
6494222--6494345	62	2.0	62	100	0	248	33	6	29	30	1.83
6498541--6498620	39	2.0	40	80	7	92	10	6	15	68	1.36
6498628--6498676	12	4.3	12	77	15	50	4	4	18	73	1.15
6498613--6498668	24	2.5	23	85	8	71	7	7	16	69	1.33
6498611--6498660	24	2.1	24	92	0	82	8	8	18	66	1.42
6498656--6498718	23	2.7	24	87	2	92	4	3	22	69	1.21
6499906--6500219	29	10.7	30	70	10	211	34	5	28	31	1.79
6499906--6500219	117	2.7	118	92	1	533	34	5	28	31	1.79
6499906--6500222	59	5.4	59	91	1	521	34	5	29	31	1.79
6500201--6500283	30	2.8	30	87	3	123	32	3	27	36	1.74
6499908--6500279	176	2.1	176	89	5	565	34	4	28	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6502147--6502220	17	4.6	16	81	11	89	58	1	1	39	1.15
6502144--6502211	6	11.3	6	78	12	77	54	1	1	42	1.18
6502146--6502205	31	1.9	31	93	0	102	55	1	1	41	1.20
6503060--6503118	20	3.0	20	80	5	66	69	20	3	6	1.26
6504080--6504242	84	2.0	82	87	7	240	38	4	10	46	1.58
6510749--6510797	21	2.3	20	83	13	55	57	6	2	34	1.35
6517352--6517390	17	2.3	17	86	0	51	15	7	28	48	1.72
6520471--6520505	18	2.0	18	94	5	63	31	5	11	51	1.61
6525572--6525626	20	2.7	21	83	5	60	30	12	29	27	1.93
6528700--6528739	20	2.0	20	90	0	62	27	5	35	32	1.79
6533959--6533985	13	2.1	13	100	0	54	59	0	0	40	0.98
6543156--6543196	21	2.0	21	90	0	64	29	9	9	51	1.67
6546268--6546417	49	3.0	49	85	3	185	26	18	25	30	1.98
6546307--6546462	49	3.2	49	80	7	127	25	19	25	29	1.98
6547810--6548334	235	2.2	235	91	0	861	28	10	41	20	1.85
6548980--6549010	9	3.3	9	95	4	53	22	0	0	77	0.77
6549107--6549162	27	2.1	27	89	0	85	32	23	33	10	1.89
6549348--6549373	9	2.9	9	100	0	52	46	0	46	7	1.31
6549723--6549765	21	2.1	21	91	4	70	25	0	13	60	1.34
6549736--6550184	94	4.8	93	89	5	649	38	2	12	46	1.54
6549867--6550012	47	3.1	47	63	21	106	42	2	10	44	1.51
6549884--6550029	47	3.1	47	63	18	104	40	0	10	47	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6549737--6550184	190	2.4	184	88	5	659	38	2	12	46	1.54
6550375--6550424	16	3.2	16	73	21	61	60	4	0	36	1.16
6550457--6550558	30	3.4	30	66	9	82	36	5	12	45	1.67
6552283--6552322	12	3.3	12	85	0	62	52	0	47	0	1.00
6555677--6555703	13	2.1	13	100	0	54	0	33	0	66	0.92
6563499--6563548	22	2.3	22	80	13	59	26	2	6	66	1.26
6570041--6570096	27	2.1	26	83	9	69	41	3	1	53	1.29
6570461--6570508	3	16.0	3	100	0	96	33	0	0	66	0.92
6575200--6575236	15	2.5	15	100	0	74	51	10	27	10	1.70
6577159--6577195	17	2.2	17	90	0	56	16	13	24	45	1.83
6580325--6580374	23	2.2	23	96	0	91	36	18	10	36	1.84
6587088--6587517	140	3.0	142	94	3	747	24	16	39	20	1.91
6591140--6591172	16	2.1	16	88	11	50	18	6	6	69	1.30
6591140--6591172	15	2.1	16	88	5	50	18	6	6	69	1.30
6591728--6591763	18	2.0	18	94	0	63	27	13	22	36	1.92
6591876--6591934	29	2.0	29	87	6	84	18	35	0	45	1.50
6592054--6592111	30	2.0	29	83	10	73	24	39	0	36	1.55
6599901--6600063	81	2.0	81	100	0	326	39	24	14	21	1.91
6601714--6601738	3	8.3	3	100	0	50	0	32	68	0	0.90
6608520--6608574	26	2.0	28	86	6	78	20	1	7	70	1.20
6609135--6609194	30	2.0	30	93	0	102	26	13	16	43	1.85
6610246--6610277	16	2.0	16	93	0	55	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6610247--6610318	16	4.6	16	70	16	51	65	2	0	31	1.07
6610260--6610320	29	2.0	31	90	6	99	60	3	0	36	1.13
6610271--6610328	29	2.0	29	89	0	89	60	5	1	32	1.29
6623701--6623765	34	1.9	34	93	0	112	41	3	0	55	1.15
6623698--6623755	17	3.4	17	68	0	53	46	1	0	51	1.11
6626998--6627041	15	2.9	15	77	12	54	11	15	43	29	1.82
6627736--6627780	19	2.4	18	78	10	54	35	17	8	37	1.81
6631932--6631963	16	2.1	15	94	5	55	71	0	0	28	0.86
6636512--6636561	6	8.3	6	77	16	50	28	2	0	70	0.99
6636537--6636566	14	2.1	14	100	0	60	20	6	0	73	1.05
6638591--6638675	27	3.1	27	77	5	73	44	28	2	24	1.66
6639994--6640315	166	1.9	169	81	10	399	38	0	36	24	1.58
6640393--6640447	24	2.3	24	100	0	110	41	20	9	29	1.82
6643664--6643737	36	2.1	36	84	5	96	60	6	2	29	1.36
6655506--6655575	30	2.3	30	80	4	79	35	4	10	50	1.56
6655988--6656038	22	2.3	22	96	0	93	33	5	9	50	1.59
6657480--6657526	17	2.7	18	83	9	62	25	0	10	63	1.26
6660086--6660115	14	2.1	14	93	6	51	90	0	0	10	0.47
6661916--6661971	16	3.6	16	72	18	64	41	8	7	42	1.63
6661921--6661995	30	2.5	30	100	0	150	44	9	9	37	1.69
6668922--6668971	23	2.2	22	82	3	55	38	18	6	38	1.75
6672189--6672213	10	2.5	10	100	0	50	32	20	32	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6681697--6681734	18	2.1	18	90	9	60	42	0	0	57	0.98
6681722--6681758	16	2.3	17	81	13	51	48	8	0	43	1.32
6681728--6681758	8	3.8	8	95	4	53	51	9	0	38	1.35
6685021--6685064	21	2.1	21	82	0	52	20	4	27	47	1.69
6688397--6688423	2	13.5	2	100	0	54	51	0	0	48	1.00
6688674--6688775	49	2.1	49	98	0	195	30	8	16	44	1.78
6693085--6693369	29	9.8	28	67	22	126	34	3	28	33	1.74
6693050--6693397	59	6.0	59	84	5	372	34	4	27	33	1.77
6693092--6693397	59	5.3	59	88	3	442	34	2	27	34	1.71
6693092--6693397	117	2.6	118	90	2	476	34	2	27	34	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125