genome.fa.s6.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  74  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23300431--23300477	24	2.0	24	82	0	58	51	10	4	34	1.56
23300508--23300582	36	2.1	35	92	2	123	24	18	14	42	1.88
23300614--23300672	29	2.0	29	93	0	100	33	35	10	20	1.86
23304905--23304961	24	2.4	24	81	0	60	49	10	3	36	1.55
23304980--23305056	36	2.2	35	90	2	118	27	16	12	42	1.85
23306302--23306330	14	2.0	15	93	6	51	20	0	6	72	1.07
23307643--23307691	13	3.8	13	76	15	57	46	4	2	46	1.33
23307640--23307692	25	2.1	25	96	0	97	45	3	1	49	1.31
23309945--23310145	101	2.0	102	92	2	332	38	15	17	28	1.91
23316582--23316649	29	2.3	29	94	0	118	42	4	16	36	1.68
23316684--23316752	30	2.3	30	85	2	86	39	8	24	27	1.85
23316659--23316759	29	3.4	29	74	6	87	36	6	22	33	1.81
23316748--23316849	29	3.4	30	83	4	134	40	0	22	36	1.61
23316748--23316861	29	3.8	29	82	12	110	41	1	21	35	1.64
23317451--23317475	11	2.3	11	100	0	50	24	0	0	76	0.80
23320355--23320410	16	3.5	16	83	9	78	37	1	26	33	1.67
23320538--23320678	54	2.5	57	80	12	164	53	4	1	41	1.29
23320526--23320619	27	3.5	26	69	12	66	53	3	1	42	1.24
23321303--23321332	14	2.2	14	94	5	53	36	10	23	30	1.87
23323910--23323958	21	2.3	21	82	6	64	4	36	0	59	1.17
23327289--23327489	85	2.3	86	81	5	246	30	25	17	26	1.97
23327289--23327490	43	4.7	43	79	3	228	30	25	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23332017--23332061	22	2.2	20	84	15	56	51	0	2	46	1.13
23332098--23332267	41	4.2	41	83	2	209	18	33	18	28	1.95
23332098--23332267	81	2.1	81	89	0	259	18	33	18	28	1.95
23333081--23333324	41	6.0	41	77	11	103	36	15	25	22	1.94
23333132--23333332	41	4.9	41	85	1	260	36	13	28	21	1.92
23333132--23333364	123	1.9	123	84	3	317	34	13	28	22	1.93
23333131--23333364	41	5.7	40	83	3	245	34	14	28	22	1.93
23333095--23333364	82	3.3	80	77	10	226	35	14	27	23	1.93
23333092--23333375	123	2.3	122	77	6	304	35	15	26	22	1.94
23334734--23334803	36	1.9	36	82	5	88	45	12	21	20	1.84
23334772--23334904	38	3.3	41	83	7	155	39	13	24	21	1.90
23336338--23336363	2	13.0	2	100	0	52	50	0	0	50	1.00
23338064--23338092	15	1.9	15	100	0	58	13	13	27	44	1.82
23340833--23340884	24	2.3	22	83	6	59	21	13	11	53	1.70
23345469--23345616	76	1.9	77	90	1	235	44	8	13	33	1.73
23345720--23345938	71	3.1	70	63	21	152	39	9	5	45	1.59
23345599--23345973	138	2.7	138	91	1	581	40	8	5	45	1.59
23347472--23347501	14	2.2	14	94	5	53	36	10	23	30	1.87
23348056--23348373	41	7.8	40	80	8	286	22	25	28	23	1.99
23348057--23348373	124	2.6	122	82	4	334	22	25	28	23	1.99
23348056--23348373	165	1.9	161	85	8	428	22	25	28	23	1.99
23350701--23350731	15	2.1	15	93	0	53	35	35	12	16	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23352266--23352439	8	18.9	9	67	21	51	44	2	2	49	1.32
23352268--23352775	18	27.3	18	66	16	141	45	2	4	47	1.37
23352352--23352428	12	6.6	12	67	15	54	48	1	1	49	1.17
23352210--23352806	112	5.3	111	93	1	926	45	3	4	46	1.39
23352687--23352902	12	17.6	12	64	18	79	46	2	2	48	1.27
23352859--23352912	4	13.0	4	76	7	54	48	1	0	50	1.11
23352932--23352998	33	2.1	33	97	2	127	43	5	8	41	1.60
23357218--23357376	66	2.4	67	86	3	223	44	16	24	14	1.86
23357594--23357622	15	1.9	15	100	0	58	13	3	34	48	1.60
23358906--23358942	16	2.2	17	90	4	58	2	18	0	78	0.87
23361872--23361911	21	1.9	21	89	0	62	65	10	12	12	1.49
23368199--23368240	17	2.4	18	80	15	52	23	23	0	52	1.47
23369256--23369296	18	2.3	18	86	0	55	46	0	0	53	1.00
23369263--23369305	18	2.4	18	84	0	59	48	0	0	51	1.00
23374793--23375214	137	3.1	138	91	3	647	47	5	5	40	1.52
23375608--23375663	11	5.0	11	75	12	51	39	0	1	58	1.08
23375609--23375711	17	6.4	17	78	18	121	43	0	1	53	1.18
23375609--23375716	6	18.8	6	69	12	75	44	0	1	52	1.18
23375641--23375709	29	2.4	28	92	2	111	44	1	1	52	1.19
23375627--23375713	46	1.9	45	95	2	156	44	1	1	52	1.15
23377446--23377818	60	6.4	58	74	9	237	35	26	3	34	1.74
23377446--23377647	90	2.3	90	83	7	243	37	23	2	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23377415--23377647	30	7.8	29	79	10	188	37	23	2	36	1.69
23377541--23377724	28	6.3	29	77	9	128	34	27	3	33	1.75
23377631--23377766	28	4.8	28	80	2	112	30	30	5	32	1.81
23377591--23377809	56	3.8	56	77	7	181	33	29	5	31	1.79
23377746--23377809	30	2.2	29	83	10	78	40	28	3	28	1.71
23389748--23390416	209	3.2	209	90	2	1076	36	17	23	22	1.95
23390714--23390802	11	7.8	11	72	7	61	39	1	4	55	1.28
23390715--23390812	17	5.6	17	76	9	83	41	1	4	53	1.27
23390715--23390811	6	16.8	6	70	12	69	42	1	4	52	1.27
23390743--23390803	23	2.6	24	84	7	81	37	1	4	55	1.31
23392540--23392873	30	11.3	29	77	12	220	35	24	3	36	1.73
23393114--23393306	97	2.0	96	88	1	287	27	17	15	38	1.90
23394717--23394746	12	2.5	12	100	0	60	26	20	23	30	1.98
23399367--23399922	138	4.0	138	89	2	843	44	5	7	41	1.57
23399898--23400044	74	2.0	75	91	1	242	31	12	8	46	1.73
23402627--23402783	57	2.8	57	88	1	226	47	11	20	21	1.81
23402828--23402887	26	2.3	27	85	8	79	46	20	11	21	1.82
23408719--23408782	24	2.6	24	85	2	83	51	3	14	31	1.57
23410378--23410461	36	2.3	36	100	0	168	44	19	7	29	1.77
23416666--23416745	12	6.8	12	72	13	51	10	8	16	65	1.47
23416666--23416798	23	5.8	22	72	11	70	7	6	18	66	1.38
23416641--23416745	33	3.0	36	83	6	126	9	8	16	65	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23416673--23416741	11	6.1	11	72	12	59	11	8	14	65	1.47
23416700--23416754	25	2.3	24	84	12	69	10	7	14	67	1.41
23416713--23416754	13	3.3	13	80	6	59	7	7	14	71	1.29
23416733--23416795	15	4.1	15	74	8	54	4	4	20	69	1.25
23416711--23416816	12	9.1	12	74	10	67	6	4	19	68	1.30
23416741--23416830	44	2.0	44	80	4	101	6	3	22	67	1.29
23416711--23416814	24	4.5	23	79	4	93	6	4	20	68	1.31
23416711--23416816	47	2.3	46	80	4	115	6	4	19	68	1.30
23419122--23419639	29	17.7	30	75	12	307	34	4	26	34	1.78
23419138--23419639	59	8.6	59	78	9	381	34	4	25	35	1.77
23419187--23419585	88	4.6	88	80	8	440	34	3	26	35	1.74
23419187--23419639	88	5.2	86	76	10	404	34	3	25	35	1.74
23419211--23419687	29	16.3	30	74	12	232	35	3	25	35	1.74
23421532--23421645	6	19.3	6	67	7	63	55	2	1	40	1.24
23421551--23421651	18	5.8	17	82	5	121	60	2	1	34	1.23
23421551--23421651	35	2.9	34	82	4	121	60	2	1	34	1.23
23422101--23422497	124	3.2	124	94	0	695	21	24	18	35	1.96
23422348--23422667	172	1.9	172	91	1	525	21	24	19	35	1.96
23422473--23423124	209	3.1	209	94	0	1097	22	24	18	35	1.96
23422938--23423285	161	2.2	161	88	1	509	22	22	19	35	1.96
23424220--23424297	41	1.9	40	86	2	111	15	19	16	48	1.81
23424220--23424295	40	1.9	40	83	5	100	14	19	17	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23435491--23436009	29	17.9	28	76	13	444	35	3	25	35	1.73
23435478--23436047	146	3.9	145	80	9	565	34	4	25	35	1.75
23435525--23436034	88	5.8	87	83	6	492	35	3	25	35	1.74
23437150--23437190	21	2.0	21	85	0	55	60	0	0	39	0.96
23437879--23437942	18	3.6	18	80	2	76	57	4	3	34	1.35
23443316--23443342	13	2.1	13	100	0	54	51	0	0	48	1.00
23444416--23444737	109	3.0	109	82	0	383	28	15	22	32	1.95
23445762--23445816	20	2.7	21	88	2	76	18	23	45	12	1.83
23446756--23446786	2	15.5	2	93	0	53	48	0	3	48	1.17
23447552--23447584	13	2.5	14	85	14	52	69	0	0	30	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125