genome.fa.s6.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  64  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19634256--19634379	48	2.5	48	93	2	212	33	16	21	29	1.95
19634252--19634422	50	3.5	50	87	3	238	33	15	21	28	1.94
19636892--19636940	22	2.3	22	85	3	73	79	4	6	10	1.03
19637748--19637790	19	2.3	19	84	8	52	58	4	0	37	1.19
19638581--19638677	10	10.2	9	71	13	52	54	3	5	37	1.38
19638605--19638677	28	2.5	28	73	8	67	54	0	5	39	1.23
19644036--19644071	17	2.1	17	90	10	56	41	8	0	50	1.33
19644024--19644071	16	3.0	16	82	14	55	41	8	0	50	1.33
19644087--19644131	23	2.0	23	95	0	81	42	20	4	33	1.72
19650077--19650125	20	2.5	20	82	0	71	34	22	28	14	1.93
19652878--19653417	264	2.0	265	91	2	861	42	15	19	22	1.88
19659217--19659256	21	1.9	21	84	0	53	32	17	17	32	1.93
19659796--19659980	27	6.8	27	85	3	237	36	25	14	23	1.92
19659796--19659983	54	3.5	54	88	2	261	36	25	13	24	1.92
19661941--19662172	51	4.5	51	91	0	365	32	15	22	29	1.95
19669278--19669515	51	4.6	51	82	4	264	31	14	23	29	1.95
19676536--19676720	51	3.6	51	89	1	273	31	15	23	29	1.95
19679461--19679563	20	5.1	20	70	10	66	49	9	5	34	1.60
19681290--19681360	34	2.1	34	91	0	115	29	14	12	43	1.82
19681855--19681910	22	2.5	22	83	8	78	42	17	3	35	1.67
19687698--19687746	16	3.3	16	67	21	52	26	8	4	61	1.42
19698905--19698949	17	2.6	18	79	10	58	60	2	0	37	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19700758--19700832	32	2.3	32	81	0	87	24	4	25	46	1.69
19700844--19700935	45	2.0	45	87	4	132	21	2	32	43	1.65
19704967--19705235	30	9.2	29	63	16	108	35	4	27	32	1.76
19704960--19705272	58	5.4	60	85	6	380	35	4	28	32	1.77
19704960--19705272	117	2.7	119	83	5	392	35	4	28	32	1.77
19705076--19705235	30	5.4	30	67	11	114	33	4	31	31	1.77
19705113--19705285	30	5.9	29	69	11	97	32	4	30	32	1.76
19705775--19705803	14	2.1	14	100	0	58	13	13	0	72	1.13
19707096--19707165	37	1.9	37	88	8	108	14	14	31	40	1.86
19707209--19707287	11	7.0	11	72	12	54	56	3	2	36	1.31
19707192--19707270	28	2.8	28	81	7	90	56	1	1	40	1.15
19707209--19707287	17	4.7	16	76	9	59	56	3	2	36	1.31
19707209--19707264	11	4.9	12	79	14	57	57	1	1	39	1.20
19707211--19707266	6	9.7	6	78	7	53	58	1	1	37	1.19
19707209--19707287	22	3.5	22	75	13	72	56	3	2	36	1.31
19707679--19708040	38	9.5	37	64	23	144	32	17	17	32	1.94
19707634--19708098	78	6.0	78	93	2	748	33	18	16	31	1.93
19718818--19718859	14	2.9	15	86	10	52	47	26	9	16	1.77
19720182--19720339	29	5.5	28	68	17	99	32	1	29	36	1.66
19720176--19720369	57	3.4	58	87	5	277	31	2	31	34	1.72
19720270--19720382	28	3.9	28	74	4	91	29	3	33	33	1.75
19720279--19720396	29	4.1	30	72	14	86	27	4	31	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19720319--19720396	30	2.7	29	80	5	86	28	6	30	34	1.82
19722194--19722263	37	1.9	37	88	8	108	14	14	31	40	1.86
19722288--19722367	23	3.6	21	75	11	70	55	2	3	38	1.32
19722306--19722355	12	4.5	11	80	11	50	58	2	4	36	1.29
19722306--19722357	5	9.6	5	79	8	50	55	1	3	38	1.29
19725488--19725587	44	2.3	44	84	6	123	45	33	1	21	1.59
19728897--19728928	15	2.1	15	100	0	64	50	12	6	31	1.65
19730096--19730139	22	2.0	22	95	0	79	15	27	11	45	1.81
19733084--19733123	20	2.0	20	85	9	55	72	2	0	25	0.97
19733503--19733539	13	2.8	13	95	0	65	18	45	18	16	1.85
19735337--19735387	26	2.0	26	92	0	84	37	23	1	37	1.66
19736404--19736471	35	1.9	35	87	0	100	20	17	8	52	1.71
19739180--19739240	5	12.2	5	87	6	88	78	1	19	0	0.83
19748094--19748119	9	2.9	9	100	0	52	65	11	11	11	1.48
19749453--19749555	50	2.1	50	85	3	136	52	6	11	29	1.63
19753157--19753246	45	2.0	45	100	0	180	31	4	15	48	1.65
19753165--19753238	25	3.2	25	65	31	72	28	5	14	51	1.65
19755293--19756067	266	2.9	266	95	0	1407	28	13	13	44	1.83
19758318--19758754	220	2.0	220	91	1	707	31	16	14	37	1.89
19761170--19761322	60	2.5	61	87	5	211	51	9	16	22	1.72
19761201--19761296	32	3.1	30	70	17	81	56	7	17	18	1.64
19764821--19764900	40	2.0	41	85	7	110	32	5	2	60	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19764830--19764899	22	3.4	22	72	18	69	32	5	2	58	1.36
19764918--19764954	10	3.5	11	85	7	51	40	2	0	56	1.13
19765023--19765100	29	2.6	30	75	4	77	25	3	2	67	1.20
19768365--19768401	15	2.3	17	86	9	51	8	37	0	54	1.30
19769391--19769456	32	2.1	32	88	8	100	21	3	1	74	1.04
19780265--19780335	17	4.3	15	76	16	61	21	5	1	71	1.14
19780279--19780332	12	4.8	12	80	8	51	18	7	0	74	1.05
19780267--19780335	11	6.0	11	77	13	59	20	5	1	72	1.13
19781266--19781305	15	2.8	15	75	25	50	70	0	20	10	1.16
19790417--19790527	44	2.5	44	92	0	186	49	8	12	29	1.69
19793234--19793266	12	2.8	12	86	13	50	60	3	0	36	1.12
19793353--19793408	27	2.1	27	83	6	69	62	7	0	30	1.22
19798731--19798783	14	3.8	14	75	7	54	47	30	0	22	1.52
19798779--19798884	26	4.1	26	90	0	158	60	11	3	24	1.47
19799907--19800037	26	5.0	26	88	0	190	25	3	11	60	1.45
19800039--19800098	21	2.9	21	85	5	77	23	0	30	46	1.52
19800731--19800826	14	6.9	14	72	9	70	41	29	4	25	1.74
19800762--19800826	7	9.3	7	80	6	69	40	32	3	24	1.71
19800822--19800955	26	5.2	26	90	0	214	59	10	3	26	1.47
19801321--19801389	24	2.8	24	80	6	75	27	33	14	24	1.94
19801318--19801401	27	3.2	27	76	8	84	27	29	16	26	1.97
19801423--19801452	6	5.0	6	95	0	51	36	33	13	16	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19809293--19809440	36	4.1	36	91	0	233	31	9	22	36	1.86
19810982--19811111	58	2.2	59	79	4	147	38	6	23	30	1.81
19811067--19811465	30	13.5	30	78	9	284	33	3	25	37	1.74
19811069--19811465	88	4.5	87	74	9	265	33	3	25	37	1.73
19811093--19811465	59	6.3	56	76	8	266	33	3	25	37	1.72
19812780--19812804	13	1.9	13	100	0	50	32	0	0	68	0.90
19813655--19813748	17	5.4	17	78	7	91	52	6	1	40	1.34
19813639--19813729	6	15.7	6	72	15	57	50	3	1	45	1.25
19814241--19814280	17	2.4	17	91	0	62	30	20	12	37	1.89
19818403--19818442	20	2.0	21	85	5	55	65	10	5	20	1.42
19828650--19828689	18	2.3	18	86	4	55	17	15	10	57	1.64
19829289--19829322	10	3.6	9	88	11	50	85	0	14	0	0.60
19829274--19829325	22	2.3	23	87	9	72	78	0	19	1	0.84
19831193--19831237	16	2.7	18	77	22	53	24	11	20	44	1.83
19834560--19834607	15	3.2	15	88	5	62	37	8	25	29	1.85
19839847--19839953	36	3.0	37	86	5	157	22	26	14	36	1.93
19842096--19842129	11	3.1	11	95	0	59	47	23	0	29	1.52
19844875--19844975	36	2.8	35	91	4	166	22	29	15	31	1.95
19857174--19857205	2	16.0	2	93	0	55	46	0	53	0	1.00
19864252--19864286	17	2.1	17	100	0	70	17	17	31	34	1.93
19869420--19869515	40	2.4	40	85	0	129	41	17	19	20	1.90
19869532--19869843	41	7.6	41	81	0	390	29	24	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19871488--19871631	43	3.3	43	91	0	216	24	20	27	27	1.99
19874101--19874335	41	5.7	41	88	3	312	25	22	13	38	1.91
19874109--19874334	82	2.7	82	91	0	353	25	23	13	38	1.91
19886659--19886699	19	2.2	19	100	0	82	29	36	19	14	1.92
19886808--19886868	6	10.3	6	87	10	90	18	0	1	80	0.80
19886865--19886905	6	6.8	6	100	0	82	0	31	0	68	0.90
19886825--19886998	12	14.5	12	85	2	80	9	11	4	74	1.19
19886859--19886905	18	2.6	18	93	0	67	2	27	0	70	0.99
19886865--19886958	6	15.7	6	86	4	64	2	21	8	68	1.27
19886943--19886998	6	9.3	6	94	0	94	14	1	1	82	0.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125