genome.fa.s6.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  63  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19310180--19310204	7	3.6	7	100	0	50	28	44	0	28	1.55
19316210--19316290	16	4.9	16	72	14	58	9	24	3	61	1.43
19316383--19316440	20	2.9	20	70	14	57	15	18	0	65	1.27
19319976--19320017	21	2.0	22	85	4	59	64	4	21	9	1.42
19334550--19334726	25	7.0	25	83	3	147	34	27	15	23	1.94
19334550--19334726	51	3.5	49	77	6	165	34	27	15	23	1.94
19340855--19340914	28	2.1	28	96	0	111	43	21	8	26	1.81
19341582--19341751	25	6.7	25	77	5	144	35	22	15	26	1.94
19345709--19345743	18	1.9	18	88	0	52	34	2	17	45	1.63
19346891--19346968	24	3.3	23	85	1	93	25	24	24	25	2.00
19361268--19361410	48	3.0	48	91	1	223	55	16	8	20	1.66
19363897--19363930	15	2.2	16	89	5	52	23	8	2	64	1.36
19363912--19363960	22	2.2	21	85	7	62	16	12	2	69	1.28
19365100--19365263	75	2.2	75	80	9	190	48	11	12	28	1.75
19365222--19365357	48	2.8	47	78	7	148	56	13	8	21	1.63
19366750--19366845	19	5.1	18	77	7	86	21	29	18	30	1.97
19370487--19370533	17	2.8	17	76	20	53	55	10	21	12	1.67
19370942--19370976	9	3.9	9	84	0	52	0	28	0	71	0.86
19370943--19370993	18	2.9	17	88	11	68	0	29	1	68	1.00
19379232--19379277	18	2.5	19	89	10	78	21	28	4	45	1.71
19385967--19385991	5	5.0	5	100	0	50	20	0	0	80	0.72
19396663--19396687	13	1.9	13	100	0	50	24	16	12	48	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19415421--19415742	158	2.0	160	93	3	549	45	9	17	27	1.79
19417570--19417617	20	2.5	19	76	6	51	41	6	0	52	1.27
19423006--19423075	26	2.7	26	75	6	70	30	21	21	27	1.98
19423006--19423090	27	3.2	26	72	8	73	28	18	21	31	1.97
19426676--19426736	31	2.0	31	90	0	95	39	13	1	45	1.53
19427259--19427284	13	2.0	13	100	0	52	53	0	0	46	1.00
19428998--19429059	18	3.7	17	78	8	65	27	0	0	72	0.85
19429018--19429087	28	2.4	30	79	15	85	32	0	1	65	1.01
19429106--19429138	14	2.3	15	89	5	50	27	0	12	60	1.32
19430906--19430937	2	16.0	2	100	0	64	50	0	0	50	1.00
19438184--19438213	5	6.0	5	100	0	60	20	0	0	80	0.72
19439476--19439519	16	2.5	17	85	14	63	18	6	0	75	1.02
19439477--19439557	17	5.1	17	71	14	57	18	7	1	72	1.14
19439477--19439554	22	3.5	22	70	14	70	17	6	1	74	1.10
19439604--19439644	3	13.7	3	90	10	66	29	0	0	70	0.87
19440074--19440278	109	1.9	109	89	0	320	33	11	15	39	1.83
19449652--19449706	28	2.0	28	88	0	83	23	29	14	32	1.94
19452879--19453713	42	20.4	42	81	6	891	29	28	15	25	1.96
19452879--19453713	82	10.2	83	80	7	888	29	28	15	25	1.96
19453637--19453828	45	4.3	45	75	6	169	34	24	16	23	1.95
19454973--19455042	34	2.1	34	84	10	90	15	7	2	74	1.16
19454999--19455042	16	2.5	17	85	14	63	18	6	0	75	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19455125--19455165	3	13.7	3	85	10	57	29	0	2	68	1.03
19476999--19477028	15	1.9	16	93	6	53	60	0	0	40	0.97
19476987--19477034	16	2.9	16	76	14	53	50	0	0	50	1.00
19477156--19477221	15	4.1	15	71	17	53	51	1	1	45	1.19
19477690--19477723	14	2.5	13	86	9	50	41	11	0	47	1.40
19478443--19478507	34	1.9	34	87	0	94	27	9	16	46	1.78
19478485--19478556	30	2.4	30	81	6	83	40	16	11	31	1.84
19478961--19479003	21	2.0	21	90	0	68	23	11	11	53	1.69
19482466--19482511	24	1.9	24	82	8	58	36	6	2	54	1.39
19482714--19482746	16	2.0	17	88	5	50	36	6	0	57	1.23
19483021--19483055	17	2.0	18	88	5	54	20	0	2	77	0.90
19489231--19489265	18	1.9	18	94	0	61	25	11	25	37	1.90
19493075--19493237	63	2.7	61	88	9	230	43	0	2	53	1.18
19493080--19493237	59	2.6	60	84	13	195	44	0	2	52	1.19
19498217--19498259	6	7.0	6	87	7	52	83	2	13	0	0.74
19498217--19498258	7	6.4	7	86	8	54	85	2	11	0	0.68
19499179--19499324	50	2.9	50	86	4	204	34	19	25	21	1.96
19499179--19499355	50	3.5	50	85	1	203	35	16	25	22	1.95
19499413--19500783	80	17.1	80	94	0	2244	32	23	18	24	1.97
19505607--19505659	21	2.5	21	100	0	106	22	5	18	52	1.66
19505686--19505739	16	3.3	16	82	5	72	53	3	0	42	1.18
19505684--19505737	17	3.2	17	81	5	74	51	3	0	44	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19505850--19505897	19	2.4	21	86	13	66	72	8	2	16	1.18
19505814--19505950	12	11.8	12	76	6	113	72	11	1	14	1.19
19505975--19506041	22	3.0	22	68	0	62	73	13	2	10	1.21
19507488--19507569	8	10.5	8	71	21	50	30	1	1	67	1.06
19508468--19508807	169	2.0	169	100	0	680	39	10	11	38	1.76
19509053--19509077	12	2.1	12	100	0	50	40	0	36	24	1.55
19510006--19510032	14	1.9	14	100	0	54	14	7	14	62	1.51
19522236--19522348	25	4.5	25	75	7	104	23	17	25	32	1.97
19522236--19522348	50	2.2	51	80	7	124	23	17	25	32	1.97
19523395--19523452	21	2.8	21	86	0	80	25	13	25	34	1.93
19532039--19532072	13	2.6	13	85	0	50	58	11	0	29	1.33
19533498--19533852	177	2.0	177	92	1	595	29	20	22	27	1.98
19540383--19540427	15	2.8	17	83	13	51	66	0	31	2	1.04
19541486--19541535	18	2.8	18	85	8	59	74	2	22	2	1.03
19547814--19547949	36	3.8	36	86	0	200	34	13	27	24	1.93
19548578--19548632	21	2.6	21	82	0	65	25	10	29	34	1.90
19552275--19552322	21	2.4	20	80	16	55	27	4	4	64	1.30
19553213--19553315	13	7.9	13	72	6	84	34	10	8	45	1.70
19553213--19553312	39	2.6	39	88	0	146	35	11	8	46	1.69
19556251--19556319	21	3.3	21	83	2	86	56	8	21	13	1.63
19563734--19563790	29	2.0	29	89	0	87	42	14	14	29	1.84
19563739--19563800	29	2.1	29	84	0	79	46	14	9	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19564087--19564131	22	2.0	23	95	4	83	57	4	0	37	1.19
19565844--19565885	19	2.3	19	83	4	59	54	4	0	40	1.21
19567451--19567489	12	3.2	12	89	7	53	25	0	5	69	1.09
19567674--19567715	16	2.5	17	80	3	50	33	0	4	61	1.17
19577966--19578004	21	1.9	20	84	5	51	25	20	7	46	1.77
19577963--19578010	20	2.3	21	75	3	53	22	16	12	47	1.80
19578830--19578874	6	7.5	6	89	0	63	22	31	0	46	1.52
19585709--19585756	22	2.1	22	80	3	60	29	4	2	64	1.23
19588029--19588063	17	1.9	19	88	11	56	68	2	2	25	1.17
19588533--19588581	22	2.2	22	92	0	80	14	6	20	59	1.56
19588792--19588836	22	2.0	22	86	0	63	15	11	17	55	1.68
19589680--19589765	42	2.0	42	95	0	154	12	23	22	41	1.88
19590357--19590659	158	1.9	155	88	3	455	32	14	19	34	1.91
19590793--19590833	21	2.0	21	90	0	64	46	14	4	34	1.66
19593866--19593907	21	2.0	21	95	0	75	45	14	4	35	1.66
19594865--19594955	36	2.5	36	96	0	164	51	8	7	31	1.61
19595194--19595222	2	14.5	2	100	0	58	51	0	0	48	1.00
19597284--19597417	63	2.1	63	84	2	180	29	48	4	17	1.67
19597431--19597493	30	2.1	30	88	5	92	26	46	1	25	1.62
19597495--19597542	9	5.3	9	80	9	62	22	64	2	10	1.35
19607443--19607495	3	18.0	3	96	3	99	67	0	32	0	0.91
19612467--19612516	6	9.0	6	83	16	72	0	18	0	82	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19612471--19612516	16	2.9	16	100	0	92	0	17	0	82	0.67
19612467--19612516	22	2.3	22	93	6	84	0	18	0	82	0.68
19616661--19616797	55	2.5	55	84	1	175	35	20	16	27	1.94
19616706--19616795	27	3.3	26	73	14	83	36	23	14	25	1.93
19616679--19616811	55	2.4	55	83	2	151	39	20	15	24	1.92
19619243--19619285	20	2.1	21	82	4	52	48	2	0	48	1.14
19619502--19619534	10	3.3	10	95	0	57	36	0	9	54	1.32
19622709--19622739	14	2.2	14	100	0	62	41	22	0	35	1.54
19628446--19628530	26	3.3	25	85	8	109	25	24	16	32	1.96
19631569--19632009	222	2.0	222	97	0	828	31	23	14	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125