genome.fa.s6.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  103  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31114731--31114804	31	2.5	31	82	4	89	39	14	10	35	1.82
31118373--31118417	20	2.2	20	80	0	54	40	2	0	57	1.11
31126558--31126603	14	3.2	14	77	17	58	67	2	0	30	1.03
31126538--31126603	23	2.9	22	80	8	69	66	1	0	31	1.01
31141132--31141174	19	2.3	19	84	8	52	58	4	0	37	1.19
31142704--31142758	27	2.0	28	82	3	67	49	21	0	29	1.50
31143179--31143288	37	2.9	38	75	12	102	42	3	3	50	1.37
31151468--31151666	101	2.0	101	98	0	389	33	8	19	39	1.82
31169421--31169445	9	2.8	9	100	0	50	68	12	12	8	1.40
31170204--31170253	25	2.0	25	96	0	91	44	30	14	12	1.81
31170432--31170550	58	2.1	58	86	0	166	34	0	15	49	1.45
31170455--31170565	58	1.9	58	83	3	143	33	0	17	49	1.47
31173612--31173694	41	2.0	41	95	0	148	34	24	19	21	1.96
31181560--31181601	21	2.0	20	90	4	66	61	2	0	35	1.09
31181591--31181655	29	2.3	27	81	10	67	50	4	1	43	1.32
31182640--31182684	24	2.0	22	83	12	56	24	0	2	73	0.95
31191027--31191080	17	3.0	18	80	20	60	70	0	1	27	0.98
31191036--31191080	16	2.6	16	83	13	54	71	0	2	26	0.98
31205507--31205541	2	17.5	2	100	0	70	0	48	0	51	1.00
31205675--31205702	5	5.6	5	100	0	56	0	17	0	82	0.68
31206921--31206994	30	2.4	30	82	6	87	37	1	1	59	1.14
31206958--31207002	21	2.1	22	87	4	65	37	2	0	60	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31207333--31207372	20	2.0	20	90	0	62	50	0	2	47	1.14
31212083--31212121	21	1.9	21	94	5	71	48	0	0	51	1.00
31212168--31212229	24	2.7	23	76	16	74	56	1	0	41	1.09
31212104--31212232	61	2.1	62	87	7	183	54	1	0	43	1.15
31212739--31212778	19	2.0	20	85	4	55	52	15	0	32	1.43
31213573--31213688	57	2.0	59	85	8	157	31	15	13	38	1.87
31219789--31219840	23	2.3	23	83	9	70	51	1	3	42	1.31
31221815--31221867	16	3.6	14	80	7	54	66	0	5	28	1.15
31228959--31228987	6	4.8	6	100	0	58	34	17	48	0	1.47
31231929--31231990	32	1.9	32	83	6	81	27	14	17	40	1.89
31233104--31233148	22	2.0	22	86	0	63	53	6	6	33	1.53
31233715--31233804	12	7.6	12	77	2	92	68	18	4	7	1.31
31233715--31233826	24	4.7	24	81	4	102	67	17	5	8	1.36
31233732--31233826	36	2.6	37	73	6	95	69	16	4	9	1.31
31233750--31233810	27	2.3	26	83	11	70	70	19	3	6	1.24
31237598--31237641	16	2.9	14	81	15	52	72	4	0	22	1.02
31238139--31238185	8	5.6	8	78	16	51	34	2	0	63	1.06
31246432--31246457	2	13.0	2	100	0	52	50	0	0	50	1.00
31251379--31251459	23	3.6	22	88	5	117	37	25	22	14	1.93
31251475--31251551	23	3.3	23	81	12	93	44	19	23	12	1.85
31254529--31254564	16	2.1	16	90	10	54	55	0	0	44	0.99
31255753--31255818	29	2.3	29	94	0	114	25	10	33	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31257159--31257183	6	4.2	6	100	0	50	20	0	32	48	1.50
31269770--31269896	30	4.3	29	79	3	119	33	37	4	23	1.76
31273427--31273467	19	2.3	19	83	8	50	53	0	7	39	1.29
31276158--31276186	15	2.0	15	93	6	51	37	6	6	48	1.57
31276260--31276301	16	2.7	16	77	3	50	23	28	9	38	1.86
31289559--31289589	10	3.1	10	100	0	62	9	19	51	19	1.74
31289914--31289977	21	3.0	21	81	6	67	23	4	12	59	1.52
31293944--31293968	4	6.2	4	100	0	50	24	28	24	24	2.00
31314280--31314309	3	10.0	3	100	0	60	66	0	0	33	0.92
31330861--31330910	24	2.1	24	96	0	91	14	32	14	40	1.85
31330897--31330955	24	2.6	22	77	12	57	22	35	10	32	1.87
31330969--31331017	18	2.7	18	87	0	71	36	34	16	12	1.86
31330969--31331020	9	5.8	9	79	0	59	36	32	19	11	1.87
31331212--31331249	15	2.5	15	95	0	67	26	15	36	21	1.93
31335278--31335305	3	9.3	3	100	0	56	32	35	0	32	1.58
31345246--31345368	58	2.2	58	82	7	155	62	3	3	30	1.27
31345266--31345359	19	4.9	19	75	17	95	60	3	2	34	1.24
31345293--31345423	66	2.0	65	83	4	165	63	1	3	32	1.19
31345513--31345794	143	2.0	143	85	1	377	36	18	13	31	1.90
31352622--31352659	6	6.5	6	93	6	69	15	15	52	15	1.75
31353137--31353174	19	2.0	20	85	10	53	34	18	13	34	1.89
31355008--31355043	18	2.1	17	89	5	54	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31355736--31355776	20	2.0	20	90	0	64	46	0	2	51	1.14
31355740--31355787	20	2.5	20	82	3	62	43	0	4	52	1.20
31361580--31361626	22	2.1	22	92	0	76	53	23	14	8	1.69
31365328--31365430	42	2.5	42	98	1	199	19	4	22	53	1.64
31365396--31365444	25	2.0	25	87	0	71	26	4	18	51	1.64
31369965--31370024	31	1.9	31	89	0	93	36	6	8	48	1.60
31388726--31388752	14	1.9	14	100	0	54	37	0	7	55	1.28
31388999--31389079	36	2.2	36	76	6	83	37	18	2	41	1.64
31390166--31390199	17	2.1	16	88	5	50	61	0	0	38	0.96
31412983--31413028	15	3.1	15	87	6	58	2	45	2	50	1.26
31415810--31415863	23	2.3	24	93	6	101	25	22	25	25	2.00
31417312--31417344	14	2.3	15	85	15	52	48	9	6	36	1.60
31420749--31420776	3	9.3	3	100	0	56	0	32	0	67	0.91
31429748--31429795	18	2.6	18	86	6	60	50	2	0	47	1.12
31429762--31429818	21	2.9	20	84	7	64	49	7	1	42	1.40
31436381--31436460	3	26.7	3	87	0	115	31	31	1	36	1.66
31448411--31448469	31	1.9	31	85	0	82	42	3	3	50	1.35
31448874--31448991	20	6.3	20	65	16	56	65	9	8	16	1.46
31448883--31449381	35	14.7	35	70	15	129	65	10	9	15	1.46
31448933--31449055	10	11.7	10	66	13	59	64	14	10	10	1.50
31448927--31450125	20	60.2	20	66	18	172	64	10	9	14	1.49
31448989--31449100	5	22.4	5	75	13	52	62	12	13	11	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31448953--31449112	45	3.5	44	83	7	162	64	11	11	13	1.50
31448994--31449120	45	2.8	45	86	2	175	62	11	12	13	1.54
31448998--31449145	45	3.3	45	80	9	126	64	10	10	14	1.50
31449153--31449341	15	12.0	15	68	13	62	68	9	6	15	1.36
31449153--31449222	25	2.8	25	75	12	81	70	14	2	12	1.29
31449204--31449395	30	6.2	30	70	17	108	67	8	7	15	1.40
31449074--31449487	55	7.7	55	71	10	164	66	9	8	15	1.43
31449234--31449938	25	28.9	25	67	18	116	65	11	9	14	1.47
31449318--31449849	55	10.6	50	71	13	161	64	12	9	14	1.50
31449348--31450180	15	55.5	15	65	23	133	63	11	9	15	1.51
31449088--31450092	35	28.8	35	70	17	239	64	10	9	14	1.48
31449592--31449718	5	25.4	5	72	12	64	62	13	13	11	1.55
31449851--31450082	25	8.9	25	67	18	93	63	8	11	16	1.51
31449905--31450181	35	8.0	35	71	14	121	63	9	10	16	1.52
31450139--31450187	20	2.5	20	89	0	71	65	12	8	14	1.47
31450153--31450226	25	3.0	25	80	7	96	66	10	8	14	1.44
31451048--31451091	19	2.2	20	84	4	54	20	36	0	43	1.52
31454142--31454175	17	1.9	18	88	5	52	64	8	2	23	1.36
31454896--31454966	27	2.6	27	79	2	79	50	1	1	46	1.18
31470027--31470071	22	2.1	21	87	4	63	35	0	17	46	1.49
31473506--31473666	79	2.0	79	97	0	304	34	16	19	29	1.94
31473996--31474041	17	2.6	18	76	13	51	60	2	0	36	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31474432--31474514	26	3.3	25	83	6	105	43	25	7	24	1.79
31474807--31474858	21	2.5	20	81	9	68	50	3	5	40	1.45
31474822--31474869	21	2.3	21	85	7	62	56	2	2	39	1.23
31475809--31476124	59	5.4	59	86	8	439	32	30	2	33	1.73
31475841--31476124	30	9.7	28	67	24	133	32	30	3	33	1.74
31484307--31484338	7	4.6	7	96	0	55	43	3	43	9	1.52
31485762--31485814	24	2.2	24	86	3	72	9	3	13	73	1.21
31485762--31485822	24	2.8	20	80	12	59	9	4	13	72	1.27
31485828--31485921	33	2.7	35	83	8	113	13	5	12	68	1.38
31485871--31485986	12	9.8	12	73	3	74	11	3	16	68	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125