genome.fa.s6.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  39  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11754406--11754430	12	2.1	12	100	0	50	52	8	24	16	1.70
11755369--11755445	20	3.8	20	77	0	64	49	20	12	16	1.79
11768941--11769277	43	7.8	43	85	1	397	35	9	23	30	1.87
11769939--11769987	21	2.3	21	77	19	57	30	12	22	34	1.91
11771694--11771776	27	3.1	27	82	3	96	18	33	18	30	1.94
11773858--11773915	10	5.8	10	82	8	73	44	20	3	31	1.68
11774325--11774395	36	2.0	36	82	0	88	38	22	9	29	1.86
11777823--11777943	26	4.8	25	70	15	104	23	19	28	28	1.98
11777800--11777943	51	2.8	51	88	0	216	26	19	27	27	1.99
11787667--11787718	18	2.9	18	80	8	52	34	30	19	15	1.93
11804086--11804217	49	2.7	49	84	2	158	28	16	28	27	1.97
11804137--11804230	49	1.9	49	84	4	127	30	14	26	27	1.95
11808705--11808747	21	2.1	20	86	4	59	2	32	0	65	1.06
11819955--11820008	28	1.9	28	92	0	90	35	25	18	20	1.95
11825089--11825127	21	1.9	21	89	5	62	30	20	10	38	1.86
11825916--11825979	16	3.7	16	71	18	56	35	32	17	14	1.89
11825839--11826055	37	5.9	37	81	4	215	39	29	16	14	1.88
11849524--11849882	123	2.9	123	88	4	519	42	8	10	38	1.70
11854653--11854693	18	2.3	18	87	4	57	34	9	4	51	1.56
11854678--11854772	41	2.3	41	94	0	163	36	24	6	32	1.81
11865996--11866056	26	2.3	26	88	0	95	26	18	24	31	1.97
11866114--11866190	37	2.1	37	85	0	100	22	18	32	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11871500--11871546	24	2.0	24	84	16	62	51	10	10	27	1.70
11874431--11874471	12	3.2	12	81	18	55	2	39	0	58	1.11
11874440--11874487	18	2.6	20	81	15	59	4	37	0	58	1.18
11875844--11875868	12	2.1	12	100	0	50	56	8	12	24	1.62
11903201--11903255	28	2.0	28	82	7	67	16	5	12	65	1.43
11912903--11912964	18	3.4	18	78	12	56	54	3	38	3	1.32
11913380--11913433	18	3.1	18	81	5	65	16	11	11	61	1.57
11933959--11933991	16	1.9	17	88	11	50	36	6	0	57	1.23
11943817--11943845	12	2.4	12	100	0	58	65	0	34	0	0.93
11947711--11947743	16	2.1	15	94	5	57	51	6	0	42	1.26
11949008--11949181	92	1.9	92	82	8	219	38	9	14	37	1.79
11949008--11949181	93	1.9	91	82	8	217	38	9	14	37	1.79
11951833--11951910	33	2.4	33	88	0	111	28	19	20	32	1.97
11952417--11952553	41	3.3	41	97	0	256	36	29	5	28	1.80
11952543--11952581	17	2.3	17	90	0	60	46	25	12	15	1.81
11962043--11962099	18	3.1	19	85	10	64	56	0	1	42	1.10
11962061--11962116	24	2.2	24	87	6	76	57	0	0	42	0.99
11962131--11962155	11	2.3	11	100	0	50	56	0	0	44	0.99
11966071--11966434	41	8.9	41	84	1	453	31	19	31	17	1.95
11968116--11968142	10	2.7	10	100	0	54	48	11	0	40	1.39
11968202--11968227	11	2.4	11	100	0	52	53	0	0	46	1.00
11969602--11969750	18	7.6	18	68	14	75	46	1	4	46	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11969543--11969876	102	3.2	102	86	9	474	44	2	5	47	1.42
11969643--11969907	113	2.4	112	90	1	431	42	3	6	47	1.46
11969813--11970047	18	12.9	18	64	22	91	42	2	3	52	1.30
11969954--11970047	8	11.8	8	71	22	65	42	1	2	54	1.19
11969977--11970047	30	2.4	30	90	9	110	42	0	2	54	1.14
11969900--11970049	22	7.3	21	67	22	86	42	2	2	53	1.23
11970069--11970135	33	2.1	33	97	2	127	43	5	8	41	1.60
11973496--11973649	66	2.3	66	88	0	227	42	16	25	15	1.87
11973635--11973687	21	2.5	21	90	0	79	32	18	47	1	1.60
11973888--11973916	15	1.9	15	100	0	58	13	3	34	48	1.60
11973985--11974098	42	2.7	41	82	4	129	28	22	26	22	1.99
11976747--11976816	34	2.0	34	83	2	86	22	18	11	47	1.81
11977884--11978124	51	4.6	52	83	4	265	29	23	13	33	1.93
11977884--11978124	103	2.3	103	83	7	292	29	23	13	33	1.93
11978851--11978901	25	2.0	25	100	0	102	19	31	11	37	1.88
11979009--11979049	21	2.0	20	85	4	55	39	12	2	46	1.54
11980311--11980389	26	3.0	26	86	0	104	26	21	22	29	1.99
11982179--11982867	49	14.1	49	79	2	560	22	26	15	35	1.94
11982179--11982867	147	4.7	147	77	3	674	22	26	15	35	1.94
11982179--11982858	98	7.0	98	77	3	634	22	26	15	35	1.94
11983817--11983894	6	12.8	6	73	16	63	0	21	0	78	0.76
11983818--11983891	7	10.7	7	74	11	64	0	21	0	78	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11983825--11983890	25	2.8	23	78	13	71	0	22	0	77	0.77
11989729--11989957	54	4.3	54	92	2	363	29	16	20	34	1.94
11990655--11990706	21	2.5	21	96	0	95	25	9	28	36	1.87
11992774--11992831	25	2.4	23	83	11	71	56	1	17	24	1.50
11992774--11992842	25	2.8	25	82	8	70	59	1	14	24	1.44
11992871--11992929	25	2.4	25	85	8	84	55	0	11	32	1.36
11996823--11996879	29	2.0	29	100	0	114	33	14	14	38	1.85
11998929--11999519	298	2.0	298	95	0	1058	39	15	18	26	1.90
12000521--12000570	20	2.5	20	80	3	57	22	8	0	70	1.13
12000905--12000942	3	12.7	3	100	0	76	31	0	0	68	0.90
12001873--12001917	22	2.0	23	83	12	58	55	0	8	35	1.31
12004918--12004958	20	2.0	20	85	9	55	53	0	7	39	1.29
12004917--12004966	22	2.2	22	79	10	57	54	0	8	38	1.30
12008921--12008969	21	2.1	23	82	14	57	26	6	0	67	1.14
12027248--12027278	2	15.5	2	100	0	62	51	0	0	48	1.00
12027692--12027721	1	30.0	1	93	0	51	0	3	0	96	0.21
12030166--12030205	2	20.0	2	89	0	62	0	55	0	45	0.99
12030162--12030205	14	3.1	14	100	0	88	0	56	0	43	0.99
12030938--12030972	18	1.9	18	94	0	61	34	14	14	37	1.86
12040157--12040190	14	2.3	14	90	10	50	17	8	2	70	1.25
12040578--12040607	12	2.6	11	90	10	51	53	36	0	10	1.35
12045436--12045480	21	2.1	21	87	0	63	33	11	15	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12048397--12048437	21	2.0	21	90	0	64	43	12	12	31	1.79
12056499--12056545	24	2.0	24	83	8	60	27	12	8	51	1.69
12057239--12057285	21	2.2	21	77	7	51	46	8	2	42	1.46
12060803--12060846	22	2.0	22	95	0	79	50	34	4	11	1.59
12063118--12063189	21	3.4	21	73	7	65	31	23	11	33	1.90
12077031--12077104	21	4.1	19	75	17	68	37	8	0	54	1.30
12077037--12077131	2	48.5	2	71	12	54	42	7	1	49	1.37
12077013--12077120	54	2.0	54	83	3	135	38	6	1	52	1.38
12077029--12077143	17	6.8	17	74	12	76	40	7	0	51	1.37
12077001--12077143	15	8.6	17	69	19	79	39	7	1	51	1.39
12086072--12086114	21	2.0	22	90	4	70	30	16	27	25	1.97
12090562--12090632	21	3.2	22	76	18	76	21	7	29	42	1.79
12094557--12094595	20	2.0	20	89	0	60	12	64	10	12	1.51
12097903--12097990	31	2.8	31	84	10	106	26	12	10	51	1.71
12098162--12098274	60	1.9	59	82	8	140	47	12	15	23	1.80
12098225--12098305	31	2.6	31	82	2	90	40	11	17	30	1.84
12098170--12098363	91	2.1	90	82	6	223	46	12	15	25	1.80
12099933--12099990	30	1.9	30	86	10	82	53	8	1	36	1.42
12100056--12100116	20	3.3	18	76	13	61	49	4	1	44	1.33
12111779--12111880	45	2.3	45	94	0	177	34	23	7	34	1.84
12119527--12119566	17	2.4	17	87	8	55	52	12	20	15	1.74
12122945--12122988	21	2.1	21	86	0	61	27	27	25	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12135552--12135596	21	2.2	20	84	15	56	17	4	2	75	1.07
12144055--12144099	23	2.0	23	86	0	63	40	0	15	44	1.47
12151902--12151997	26	3.7	26	75	5	77	28	18	22	30	1.98
12154465--12154523	18	3.3	18	90	0	100	11	32	8	47	1.70
12164009--12164146	60	2.3	60	94	0	240	32	28	12	26	1.92
12169248--12169485	129	1.8	129	84	5	329	44	21	9	25	1.81
12169757--12169809	20	2.6	20	76	8	54	30	24	13	32	1.93
12180610--12180658	23	2.0	24	84	7	64	55	0	36	8	1.30
12187597--12187621	7	3.6	7	100	0	50	64	12	12	12	1.51
12192763--12192787	13	1.9	13	100	0	50	48	12	16	24	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125