genome.fa.s6.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  46  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14304052--14304447	56	7.1	56	92	0	591	30	24	7	37	1.83
14304065--14304465	55	7.2	55	92	0	577	30	24	7	36	1.84
14305934--14305988	21	2.6	21	85	5	76	34	20	12	32	1.90
14309007--14309046	20	2.0	20	90	4	64	47	5	5	42	1.47
14312230--14312310	25	3.2	25	85	3	110	28	14	24	32	1.95
14312320--14312383	25	2.5	26	84	5	85	29	21	25	23	1.99
14315639--14315710	34	2.2	33	84	2	90	34	8	6	50	1.60
14322092--14322156	20	3.5	20	67	28	61	46	0	6	47	1.27
14322092--14322168	35	2.2	36	77	17	99	48	0	5	46	1.24
14323173--14323267	18	5.4	17	85	6	127	41	0	2	56	1.11
14323190--14323267	6	13.3	6	73	10	72	43	0	1	55	1.08
14324987--14325383	30	13.4	30	74	15	149	36	24	2	36	1.68
14324978--14325383	59	6.9	57	78	13	271	36	24	2	36	1.69
14325017--14325360	89	3.9	90	80	11	342	36	25	2	36	1.69
14337534--14338210	207	3.2	209	86	2	923	36	18	22	22	1.95
14338728--14338973	29	8.4	28	79	12	237	36	24	2	36	1.69
14338728--14339009	59	4.8	58	83	6	313	36	25	2	35	1.71
14338756--14338973	117	1.9	117	92	1	357	37	25	2	35	1.69
14338695--14339009	88	3.6	88	77	15	282	36	25	3	35	1.72
14338756--14339023	117	2.3	117	86	4	353	38	25	3	33	1.72
14338756--14339033	29	9.5	28	75	14	161	37	24	3	34	1.73
14343124--14343188	16	3.8	16	69	25	51	9	21	32	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14343141--14343252	21	5.8	21	64	29	61	8	21	32	37	1.84
14343125--14343244	37	3.2	37	92	0	213	10	20	31	38	1.85
14343123--14343284	74	2.2	73	82	9	204	10	20	30	38	1.86
14343774--14343877	6	18.0	6	70	15	67	46	2	1	49	1.28
14343750--14343842	24	3.7	24	74	19	73	40	3	2	53	1.29
14343762--14343849	41	2.1	41	82	0	104	42	3	2	52	1.31
14343774--14343818	17	2.6	18	85	3	65	42	4	0	53	1.21
14343774--14343857	41	2.0	42	88	2	125	41	3	2	52	1.31
14345571--14345768	29	6.6	29	67	18	104	32	27	3	36	1.74
14345570--14345768	59	3.3	59	85	6	274	33	27	3	36	1.74
14358049--14358509	76	6.0	76	94	0	787	34	16	16	32	1.91
14358794--14358838	17	2.6	18	85	3	65	42	4	0	53	1.21
14358829--14358880	18	2.9	18	80	11	61	48	1	1	48	1.24
14360750--14361321	59	9.7	59	88	1	763	32	29	3	34	1.75
14360778--14361293	29	17.5	29	68	20	189	32	28	3	35	1.73
14361280--14361349	28	2.5	28	86	9	81	28	32	10	28	1.89
14362218--14362262	19	2.3	20	84	3	56	48	15	4	31	1.65
14362473--14362499	11	2.5	11	100	0	54	7	0	0	92	0.38
14373790--14373852	22	2.9	22	83	9	92	38	9	12	39	1.76
14385097--14385158	29	2.1	30	87	3	90	50	4	4	40	1.45
14388396--14388442	24	2.0	24	91	0	76	48	14	14	21	1.80
14390754--14390839	28	3.1	28	80	9	72	36	0	10	53	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14390788--14390839	26	2.0	26	84	0	68	32	0	7	59	1.26
14390841--14390940	7	13.9	7	77	14	78	26	1	28	45	1.60
14390841--14390940	15	6.9	15	73	17	79	26	1	28	45	1.60
14390843--14390948	29	3.7	29	80	6	101	27	0	26	45	1.60
14390842--14390947	22	4.9	21	76	11	97	26	0	27	45	1.60
14393364--14393447	6	13.8	6	72	12	55	46	2	2	48	1.28
14393364--14393422	31	1.9	31	86	6	84	38	1	3	55	1.26
14394418--14394448	16	1.9	16	93	0	53	16	22	22	38	1.92
14395343--14395768	59	7.2	59	91	1	638	31	28	4	35	1.79
14396932--14396981	3	16.7	3	100	0	100	34	0	0	66	0.92
14397494--14397550	25	2.5	23	86	11	73	73	7	0	19	1.05
14399984--14400104	57	2.1	57	90	0	188	27	12	14	45	1.81
14399984--14400132	57	2.6	57	86	2	165	28	10	16	44	1.80
14429250--14429299	16	3.6	14	73	26	52	62	2	0	36	1.07
14429257--14429333	28	2.9	27	78	9	77	61	1	1	36	1.13
14429257--14429326	19	4.0	17	71	16	54	62	1	1	34	1.13
14429998--14430036	18	2.1	19	85	4	53	28	2	5	64	1.28
14430523--14430567	21	2.1	21	87	0	63	4	46	11	37	1.60
14435261--14435333	23	3.5	22	73	21	75	45	1	1	52	1.18
14435281--14435344	12	5.5	12	73	14	53	42	1	0	56	1.09
14435283--14435344	17	3.6	17	78	10	72	41	1	0	56	1.09
14435281--14435344	29	2.2	29	78	10	69	42	1	0	56	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14435418--14435446	11	2.5	12	94	5	51	37	0	0	62	0.96
14435409--14435464	29	2.0	28	89	3	85	33	0	1	64	1.04
14435438--14435477	17	2.3	17	91	4	62	25	2	5	67	1.23
14435535--14435842	157	2.0	157	94	0	535	30	24	16	28	1.96
14436539--14436572	17	2.0	17	100	0	68	17	29	23	29	1.97
14436556--14436678	41	3.0	41	87	0	174	23	24	24	27	2.00
14438715--14438750	15	2.3	15	90	4	54	25	2	19	52	1.59
14438722--14438751	15	2.0	15	100	0	60	26	0	20	53	1.46
14438787--14438820	13	2.6	13	90	0	59	82	0	0	17	0.67
14439024--14439111	44	2.0	44	100	0	176	18	9	11	61	1.55
14459749--14459778	3	10.0	3	100	0	60	66	0	0	33	0.92
14469659--14469728	22	3.3	22	90	4	99	40	20	22	17	1.92
14477355--14477384	14	2.2	14	94	5	53	30	23	10	36	1.87
14483846--14483884	21	1.9	21	94	5	71	23	38	20	17	1.93
14486341--14486391	18	2.8	18	87	3	66	76	1	19	1	0.98
14486341--14486391	10	5.4	10	72	13	54	76	1	19	1	0.98
14492392--14492544	25	6.0	25	86	4	162	19	14	28	37	1.91
14493882--14493923	19	2.2	19	100	0	84	23	9	38	28	1.86
14501371--14501419	23	2.2	22	85	7	64	24	0	14	61	1.33
14501863--14501976	27	4.2	27	88	0	165	25	16	22	35	1.95
14501863--14501985	54	2.3	54	87	2	187	25	17	21	34	1.96
14501863--14501999	27	5.1	27	85	3	109	26	16	22	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14501884--14502012	27	4.9	25	84	3	80	21	17	25	35	1.95
14505431--14505565	35	3.9	35	89	2	175	40	31	9	17	1.82
14508253--14508308	24	2.3	24	84	0	67	55	8	5	30	1.53
14508823--14508991	69	2.4	69	84	1	223	33	15	15	34	1.90
14508823--14509014	69	2.8	67	79	7	206	32	16	15	35	1.90
14509276--14509424	59	2.5	59	86	0	208	24	19	11	44	1.84
14509286--14509376	31	3.0	30	70	15	89	24	19	10	45	1.83
14518911--14518973	32	2.0	32	87	0	90	53	4	9	31	1.54
14525564--14525589	12	2.2	12	100	0	52	53	15	15	15	1.73
14527494--14527804	41	7.6	41	87	2	430	27	24	24	24	2.00
14527506--14527804	81	3.7	81	86	4	413	27	24	24	24	2.00
14527494--14527804	122	2.5	121	86	2	426	27	24	24	24	2.00
14529452--14529493	21	2.0	21	86	9	59	42	2	0	54	1.13
14529822--14529941	41	2.9	42	79	2	143	32	19	23	25	1.97
14530088--14530125	19	2.0	19	94	0	67	31	18	0	50	1.47
14533136--14533168	14	2.4	14	85	5	50	54	6	0	39	1.25
14533178--14533232	17	3.4	16	80	7	67	52	0	1	45	1.11
14533489--14533521	14	2.4	14	85	5	50	54	6	0	39	1.25
14532855--14533802	121	7.9	121	86	4	1248	50	4	1	43	1.32
14533510--14533678	30	5.6	30	67	20	102	50	2	1	44	1.24
14533539--14533590	17	3.2	16	81	5	61	53	0	1	44	1.11
14533600--14533793	64	3.1	64	71	16	217	48	6	0	44	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14533652--14533700	19	2.5	20	78	18	59	55	2	0	42	1.11
14533631--14533688	30	1.9	30	82	6	73	55	1	0	43	1.10
14533683--14533725	8	5.4	8	80	0	50	39	0	2	58	1.11
14532855--14533802	358	2.6	353	91	5	1503	50	4	1	43	1.32
14539681--14539774	42	2.2	42	96	0	170	40	12	42	4	1.63
14539680--14539796	21	5.6	21	72	6	94	42	13	40	3	1.61
14539681--14539786	42	2.5	42	92	3	160	41	13	41	3	1.62
14540006--14540035	15	2.0	15	100	0	60	20	0	26	53	1.46
14540100--14540422	43	7.5	43	83	3	364	28	17	25	28	1.98
14540157--14540429	129	2.1	129	89	3	406	27	19	26	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125