genome.fa.s6.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  60  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18418134--18418838	371	1.9	370	83	5	924	28	16	13	41	1.86
18417921--18419069	587	2.0	585	83	5	1444	28	18	13	40	1.88
18418482--18419285	216	3.7	213	82	5	882	28	17	14	40	1.88
18419132--18419442	158	2.0	158	82	7	382	28	17	11	42	1.84
18419294--18419827	214	2.5	216	81	4	598	29	17	11	41	1.85
18417813--18419827	804	2.5	797	84	5	2549	28	17	13	40	1.87
18418706--18419827	588	1.9	590	86	3	1598	28	17	13	40	1.87
18419856--18421247	701	2.0	695	89	0	2118	30	16	20	32	1.95
18422042--18422075	15	2.4	14	90	9	52	70	0	11	17	1.16
18423024--18423073	3	16.7	3	95	0	55	24	0	10	66	1.22
18423136--18423181	25	1.9	25	86	8	69	32	4	6	56	1.45
18424173--18424663	205	2.3	206	84	5	601	28	16	15	39	1.89
18432048--18432082	16	2.3	15	90	5	52	51	2	0	45	1.16
18433200--18433243	19	2.3	19	84	0	61	43	2	0	54	1.12
18434344--18435024	341	2.0	340	99	0	1335	35	24	16	23	1.94
18436334--18436380	22	2.1	22	92	0	76	38	23	12	25	1.90
18448110--18448184	21	3.4	22	74	16	66	44	28	8	20	1.79
18452304--18452333	15	1.9	16	93	6	53	43	6	0	50	1.28
18453368--18453405	18	2.0	20	90	10	62	34	5	0	60	1.19
18453378--18453417	18	2.2	19	86	8	57	27	7	2	62	1.35
18453378--18453417	17	2.3	18	86	4	55	27	7	2	62	1.35
18454494--18458265	216	17.7	215	79	6	3670	27	18	14	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18454494--18458265	431	8.8	430	80	5	3720	27	18	14	39	1.89
18458296--18462308	216	18.7	216	78	4	3813	27	18	13	40	1.88
18458906--18458945	19	2.0	20	90	9	64	30	7	10	52	1.62
18458296--18462304	431	9.4	430	78	5	3840	27	18	13	40	1.88
18458298--18462308	862	4.7	862	83	3	4895	27	18	13	40	1.88
18460014--18460370	198	1.8	198	80	1	437	29	19	12	38	1.89
18460200--18462308	430	4.9	431	79	3	2221	27	18	13	40	1.88
18462725--18462771	25	2.0	23	87	8	67	31	2	6	59	1.34
18470322--18471231	304	3.0	303	91	0	1500	32	12	20	34	1.90
18477415--18477461	18	2.6	18	93	0	76	55	31	6	6	1.51
18487872--18488186	74	4.2	73	80	8	339	34	13	21	29	1.93
18487868--18488186	38	8.5	38	80	9	343	34	14	21	29	1.93
18487894--18488177	150	1.9	150	89	1	444	35	15	20	28	1.93
18488817--18488864	20	2.5	19	76	6	51	41	6	0	52	1.27
18491096--18491144	9	5.3	9	75	4	53	34	2	2	61	1.19
18491086--18491128	18	2.3	19	88	11	63	30	2	4	62	1.28
18491095--18491144	19	2.8	17	80	14	55	36	2	2	60	1.20
18491152--18491197	19	2.4	19	85	0	65	39	0	0	60	0.97
18506902--18506939	3	12.7	3	83	10	51	68	0	2	28	1.03
18506911--18506936	13	2.0	13	100	0	52	69	0	0	30	0.89
18506906--18506940	16	2.2	16	94	0	61	68	0	2	28	1.04
18508146--18509860	215	8.0	213	80	6	1685	42	13	16	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18509869--18511353	214	6.9	215	79	6	1345	40	13	17	28	1.88
18509869--18513396	215	16.0	215	72	13	1613	40	12	17	29	1.87
18509039--18510823	963	1.9	962	81	6	2207	41	13	16	28	1.87
18509869--18513351	431	7.9	425	74	12	1734	40	12	17	29	1.87
18511125--18511164	19	2.0	19	85	9	53	55	10	10	25	1.64
18511138--18511617	262	1.8	262	81	4	601	39	12	17	30	1.87
18511602--18511640	19	1.9	19	85	10	51	51	12	10	25	1.71
18510894--18512223	476	2.8	475	90	2	2005	39	12	17	30	1.87
18511792--18511881	47	1.9	47	81	4	110	41	10	11	37	1.74
18512224--18513379	216	5.4	214	80	3	1165	40	12	17	28	1.87
18512220--18513377	432	2.7	431	81	3	1326	40	12	17	28	1.87
18513406--18515723	216	10.8	216	81	2	2539	28	17	13	41	1.87
18513406--18515723	431	5.4	431	81	2	2623	28	17	13	41	1.87
18515570--18515879	158	2.0	158	85	3	428	27	17	11	43	1.83
18515349--18516070	371	1.9	373	84	3	952	28	17	13	40	1.87
18515144--18516264	587	1.9	588	87	3	1657	28	17	12	40	1.86
18523109--18523154	7	6.7	7	76	14	51	82	0	15	2	0.76
18523107--18523145	10	3.9	10	87	9	53	82	0	15	2	0.79
18525225--18525276	14	3.6	14	76	19	52	69	1	15	13	1.28
18526236--18526282	3	15.7	3	95	0	85	0	0	29	70	0.88
18526353--18526398	25	1.9	23	86	8	65	34	4	4	56	1.39
18527392--18528135	216	3.5	216	81	6	872	28	16	15	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18535466--18535495	15	1.9	16	93	6	53	43	6	0	50	1.28
18536534--18536644	10	11.4	10	70	11	61	31	2	1	63	1.18
18536534--18536601	9	7.3	9	72	11	57	30	4	1	63	1.23
18536522--18536567	19	2.4	19	89	10	67	26	2	6	65	1.28
18536533--18536601	19	3.7	20	77	13	74	31	4	1	62	1.24
18536533--18536601	18	3.7	18	78	16	70	31	4	1	62	1.24
18537677--18541461	216	17.7	215	79	6	3512	28	17	14	39	1.88
18541492--18545516	216	18.7	216	79	5	3856	27	18	13	40	1.88
18541492--18545512	431	9.4	431	79	5	3953	27	18	13	40	1.88
18545931--18545976	25	1.9	23	86	8	65	32	4	6	56	1.45
18549871--18549899	13	2.3	13	94	5	51	75	0	6	17	1.01
18549884--18549908	10	2.5	10	100	0	50	68	0	8	24	1.16
18549927--18549964	20	1.9	20	89	10	60	23	5	2	68	1.23
18550878--18550923	15	3.8	12	79	20	51	71	0	15	13	1.14
18550880--18550913	15	2.4	14	90	9	52	70	0	11	17	1.16
18552953--18553552	216	2.8	215	84	5	744	29	17	13	40	1.87
18554016--18554061	25	1.9	25	86	8	69	34	4	6	54	1.46
18558008--18558060	5	9.8	5	82	11	52	16	3	1	77	1.01
18558008--18558060	17	3.2	17	79	15	58	16	3	1	77	1.01
18558008--18558059	27	1.9	27	84	7	70	15	3	1	78	0.98
18558008--18558060	11	4.9	10	76	15	52	16	3	1	77	1.01
18558993--18559028	16	2.4	15	86	13	56	77	0	11	11	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18576267--18576314	20	2.5	19	76	6	51	43	8	0	47	1.33
18578171--18578207	3	12.3	3	100	0	74	67	0	0	32	0.91
18579034--18579087	26	2.1	26	100	0	108	53	11	16	18	1.72
18580427--18580595	38	4.4	38	84	2	223	34	13	21	31	1.91
18580424--18580595	76	2.3	75	87	4	254	34	13	20	30	1.92
18583613--18583673	9	6.6	9	72	7	50	32	1	1	63	1.13
18583603--18583663	19	3.3	18	84	11	70	32	3	3	60	1.29
18583667--18583710	19	2.3	19	84	0	61	38	0	0	61	0.96
18583667--18583721	20	2.8	20	80	2	58	36	0	0	63	0.95
18588367--18588721	38	9.4	38	81	7	402	29	21	14	34	1.93
18588367--18588724	112	3.2	113	80	9	419	28	21	14	34	1.93
18588367--18588741	150	2.5	151	83	8	473	28	21	15	34	1.94
18594115--18594158	17	2.4	19	78	21	58	61	9	29	0	1.27
18603238--18603288	26	2.0	26	96	0	93	52	13	7	25	1.67
18604583--18604799	99	2.2	100	90	1	339	60	8	9	21	1.53
18606301--18606395	33	2.9	33	85	0	118	29	18	22	29	1.98
18628913--18629012	40	2.4	42	88	3	141	26	26	11	37	1.89
18629859--18629906	22	2.2	21	81	3	60	37	14	0	47	1.44
18633342--18634123	391	2.0	390	98	0	1528	29	24	13	31	1.94
18647643--18647740	40	2.4	42	87	3	137	26	25	12	35	1.91
18653470--18653556	33	2.6	33	85	3	113	26	21	18	33	1.96
18658403--18658499	41	2.4	41	94	0	167	36	26	6	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18664445--18664524	36	2.2	36	84	6	99	45	35	1	18	1.58
18664479--18664526	21	2.3	21	92	3	80	52	33	2	12	1.51
18664501--18664535	14	2.4	15	90	4	54	48	31	5	14	1.67
18664557--18664596	10	3.8	11	80	12	57	22	35	22	20	1.96
18664557--18664596	20	2.0	21	90	5	64	22	35	22	20	1.96
18664587--18664639	20	2.7	20	91	5	81	16	22	20	39	1.92
18664587--18664636	13	3.7	14	71	7	50	18	24	22	36	1.95
18666375--18666472	33	3.0	33	89	3	144	27	21	22	28	1.99
18669827--18669871	19	2.4	19	88	7	65	64	4	2	28	1.25
18670877--18670906	15	1.9	16	93	6	53	50	0	6	43	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125