genome.fa.s6.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  86  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26515127--26515165	14	2.8	14	88	0	51	61	25	2	10	1.41
26515140--26515179	21	1.9	21	84	0	53	57	27	2	12	1.48
26515211--26515282	27	2.6	27	80	2	72	47	26	1	25	1.60
26518120--26518178	21	2.8	21	76	0	64	33	23	16	25	1.96
26518143--26518195	21	2.6	21	77	14	56	35	26	9	28	1.87
26518236--26518288	21	2.5	22	93	3	90	35	37	13	13	1.83
26518911--26518973	18	3.4	18	77	2	63	34	25	17	22	1.95
26522412--26522453	3	14.3	3	95	5	77	0	30	0	69	0.89
26532121--26532171	21	2.5	19	76	17	57	27	13	23	35	1.93
26541131--26541163	15	2.1	16	88	5	50	69	3	15	12	1.30
26541164--26541198	6	6.0	6	93	6	63	34	0	17	48	1.47
26541164--26541198	11	3.0	12	91	8	63	34	0	17	48	1.47
26541160--26541202	17	2.6	17	92	7	72	37	0	16	46	1.47
26541549--26541591	18	2.3	19	80	4	52	39	0	4	55	1.20
26542388--26542444	16	3.6	16	79	9	71	43	0	10	45	1.38
26542459--26542497	17	2.3	16	83	12	51	43	5	12	38	1.65
26547720--26548050	29	11.2	30	64	19	106	39	3	26	30	1.71
26547715--26548143	59	7.3	57	85	5	457	39	2	27	30	1.71
26547715--26548143	58	7.3	59	86	3	546	39	2	27	30	1.71
26547899--26548113	30	7.3	30	68	21	116	39	2	27	31	1.69
26547720--26548143	236	1.8	233	87	3	627	39	2	26	31	1.70
26548001--26548187	29	6.4	30	69	20	119	37	3	25	33	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26548136--26548206	30	2.4	29	83	4	88	36	8	16	38	1.80
26550103--26550160	6	10.0	6	76	14	50	46	3	0	50	1.18
26550124--26550176	24	2.2	23	83	6	61	49	3	1	45	1.31
26550145--26550190	18	2.6	18	78	0	56	54	2	4	39	1.32
26550469--26550928	76	6.0	76	94	0	749	32	16	15	35	1.90
26564296--26564322	13	2.1	13	100	0	54	37	7	22	33	1.82
26564346--26564439	18	5.4	17	75	9	73	48	3	3	44	1.34
26564340--26564425	6	14.7	6	76	9	70	46	2	1	50	1.21
26571165--26571201	3	12.3	3	100	0	74	67	0	0	32	0.91
26571944--26572031	24	3.7	24	81	1	97	40	17	20	21	1.91
26582070--26582114	18	2.5	18	100	0	90	64	0	0	35	0.94
26582887--26582939	23	2.6	19	80	14	61	28	1	5	64	1.27
26593316--26593386	31	2.4	29	88	4	97	39	4	0	56	1.19
26593314--26593384	11	6.5	11	73	15	58	39	4	0	56	1.19
26593363--26593397	17	2.1	17	88	0	52	45	2	0	51	1.16
26595104--26595223	30	4.0	30	87	3	170	37	23	4	35	1.74
26595109--26595229	59	2.0	60	91	1	199	38	23	3	34	1.71
26595227--26595449	59	3.8	59	92	1	351	30	29	4	35	1.79
26595266--26595419	29	5.2	29	72	9	141	29	29	5	36	1.79
26595227--26595444	29	7.4	28	68	25	121	30	28	4	36	1.77
26595226--26595486	59	4.5	58	78	12	248	28	29	6	35	1.82
26596865--26596955	35	2.7	35	84	5	125	52	7	20	18	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26597125--26597154	11	2.6	12	89	10	53	66	0	20	13	1.24
26599438--26599487	21	2.3	23	89	6	77	28	4	2	66	1.21
26599440--26599487	22	2.2	20	85	10	60	27	4	2	66	1.21
26599449--26599502	23	2.5	22	79	8	56	35	3	3	57	1.34
26605394--26605607	23	9.5	23	71	14	142	42	20	24	12	1.87
26605448--26605522	39	1.9	39	91	0	123	44	21	22	12	1.85
26605487--26605607	48	2.6	46	82	7	145	40	21	24	13	1.89
26608770--26608807	18	2.1	18	85	9	51	52	15	7	23	1.69
26612338--26612380	20	2.2	20	91	4	70	41	0	6	51	1.29
26612358--26612391	11	3.0	11	91	4	50	35	0	8	55	1.31
26613255--26613294	19	2.1	19	90	0	62	25	25	20	30	1.99
26614087--26614140	20	2.7	20	85	0	72	27	37	7	27	1.84
26617171--26617224	20	2.7	20	91	0	81	29	33	7	29	1.85
26617973--26618035	6	11.0	6	80	10	78	44	1	1	52	1.20
26617973--26618035	17	3.7	17	87	4	83	44	1	1	52	1.20
26617973--26618023	23	2.2	23	92	0	84	43	0	1	54	1.11
26617974--26618035	23	2.7	23	87	5	72	45	1	1	51	1.20
26617973--26618023	11	4.5	11	90	7	75	43	0	1	54	1.11
26617989--26618051	17	3.8	16	82	4	63	47	3	1	47	1.27
26619913--26620022	30	3.7	29	82	9	141	39	21	3	35	1.71
26619913--26620042	30	4.4	30	80	8	140	37	24	3	34	1.71
26620048--26620140	30	3.1	30	70	20	77	35	23	2	38	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26619936--26620235	59	5.1	59	81	7	249	33	25	3	38	1.71
26620076--26620249	30	6.0	29	70	20	121	31	27	4	37	1.75
26620135--26620299	88	1.9	88	83	6	219	30	29	4	36	1.76
26625255--26625285	16	2.0	16	93	6	55	83	0	0	16	0.64
26625298--26625392	30	3.2	28	71	12	84	60	1	1	37	1.11
26625345--26625385	10	4.4	10	82	11	52	70	2	0	26	0.99
26636121--26636161	14	2.9	14	82	13	57	78	0	0	21	0.76
26638215--26638289	32	2.3	33	88	6	109	65	6	2	25	1.30
26638232--26638286	16	3.6	16	73	22	55	65	5	3	25	1.31
26641729--26641767	12	3.2	12	85	3	51	2	30	0	66	1.05
26648901--26648975	32	2.3	33	86	6	100	65	8	2	24	1.33
26651210--26651262	2	26.5	2	96	0	97	0	49	1	49	1.12
26655459--26655531	21	3.4	21	84	5	76	68	6	9	15	1.37
26656377--26656440	32	2.0	31	82	14	78	56	0	1	42	1.09
26658909--26658956	24	2.0	24	88	8	71	47	0	18	33	1.49
26659141--26659562	208	2.0	208	98	0	808	29	12	24	33	1.92
26666550--26666599	26	1.9	26	84	8	66	38	0	6	56	1.24
26666707--26666752	25	2.0	23	84	16	60	50	2	13	34	1.53
26667104--26667134	15	2.0	16	93	6	55	38	3	0	58	1.15
26667230--26667264	18	1.9	18	88	0	52	34	14	17	34	1.90
26668554--26668758	89	2.3	88	79	8	222	36	18	9	35	1.83
26668865--26668922	29	2.0	28	86	6	80	56	1	1	39	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26668901--26668954	20	2.7	19	74	17	56	62	1	1	33	1.16
26668821--26668955	9	14.0	9	67	11	54	62	2	3	31	1.25
26669135--26669258	20	6.4	19	70	10	81	39	3	0	56	1.21
26669147--26669258	19	5.8	19	68	9	75	40	3	0	55	1.23
26669134--26669274	38	3.7	38	71	11	99	36	2	1	58	1.21
26670248--26670295	25	1.9	25	82	0	60	39	6	6	47	1.54
26672757--26672782	2	13.0	2	100	0	52	50	0	0	50	1.00
26692572--26694063	502	3.0	502	94	0	2563	26	18	21	34	1.96
26696611--26696733	37	3.3	36	78	10	117	36	29	17	16	1.92
26698774--26698872	36	2.8	36	89	6	155	32	16	25	26	1.96
26698846--26698900	28	2.0	28	92	0	92	32	16	25	25	1.96
26700068--26700121	21	2.6	21	96	0	99	35	29	20	14	1.93
26703538--26703579	22	1.9	22	85	0	57	16	16	35	30	1.92
26704584--26705668	361	3.0	361	92	0	1801	33	21	15	29	1.94
26706354--26706397	22	1.9	24	86	9	65	40	13	2	43	1.57
26709479--26709511	6	5.7	6	89	3	50	0	84	0	15	0.61
26723047--26723080	10	3.4	10	83	0	50	58	5	14	20	1.57
26724568--26724625	29	2.0	29	96	0	107	55	5	10	29	1.55
26724887--26725103	60	3.6	59	80	7	242	35	4	25	35	1.75
26724817--26725103	29	9.7	29	75	12	212	34	4	27	33	1.77
26724823--26725134	30	10.5	30	77	13	204	34	4	27	33	1.77
26726921--26726959	17	2.4	17	95	4	71	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26726911--26726952	6	7.2	6	79	15	52	52	0	2	45	1.13
26726914--26726957	22	2.0	23	86	4	63	56	0	2	40	1.11
26726990--26727033	16	2.6	17	78	7	54	59	4	2	34	1.30
26727566--26728327	50	15.3	48	70	10	365	14	30	17	36	1.90
26727507--26728308	99	8.1	97	75	6	482	14	31	17	36	1.90
26727505--26728196	149	4.6	148	78	5	610	15	31	17	35	1.91
26736520--26736577	29	2.0	29	96	0	107	53	8	10	27	1.64
26736757--26736822	29	2.3	29	83	0	87	30	3	30	36	1.73
26736770--26736965	29	6.7	29	83	6	166	35	2	23	37	1.69
26736813--26736970	30	5.3	30	82	11	141	38	1	20	38	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125