genome.fa.s6.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  116  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36037274--36037329	22	2.5	22	79	2	58	66	1	0	32	1.03
36047512--36047553	18	2.3	18	83	0	57	69	2	0	28	1.01
36050074--36050146	28	2.5	31	78	14	82	24	0	10	64	1.26
36055216--36055240	2	12.5	2	100	0	50	48	0	0	52	1.00
36062564--36062723	53	3.0	53	99	0	311	41	12	13	32	1.81
36066226--36066256	12	2.7	12	95	5	55	0	9	3	87	0.66
36070252--36070443	105	1.8	105	82	0	249	26	26	14	33	1.94
36074294--36074356	33	1.9	33	84	12	85	53	3	11	31	1.52
36074914--36074990	28	2.9	27	71	19	70	59	5	3	31	1.37
36085156--36085197	21	2.0	21	100	0	84	38	19	9	33	1.84
36087591--36087615	3	8.3	3	100	0	50	0	32	0	68	0.90
36089000--36089027	3	9.3	3	100	0	56	0	32	0	67	0.91
36113554--36113599	20	2.4	19	82	13	58	19	2	4	73	1.10
36115247--36115316	29	2.4	29	100	0	140	38	17	10	34	1.83
36117575--36117623	25	2.0	24	84	4	62	59	0	2	38	1.09
36117684--36117747	32	2.0	32	100	0	128	56	12	25	6	1.59
36120092--36120137	2	23.5	2	82	4	58	47	4	2	45	1.34
36122664--36122692	10	2.7	11	94	5	51	55	0	0	44	0.99
36123224--36123263	17	2.4	17	86	0	53	70	0	22	7	1.12
36126110--36126148	19	1.9	19	85	10	51	23	0	2	74	0.94
36126800--36126834	13	2.6	14	86	9	54	25	5	0	68	1.11
36126980--36127063	28	3.0	27	77	8	69	46	1	0	52	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36127640--36127676	15	2.4	16	90	4	58	40	0	0	59	0.97
36127666--36127736	30	2.2	32	85	7	92	47	0	0	52	1.00
36136308--36136335	2	14.0	2	100	0	56	50	0	0	50	1.00
36137764--36137798	17	2.1	17	94	0	61	37	0	2	60	1.12
36137767--36137807	17	2.4	17	87	0	55	46	4	2	46	1.37
36139487--36139556	28	2.5	28	73	2	77	52	1	0	45	1.09
36142301--36142342	22	1.9	22	85	0	57	14	2	7	76	1.10
36144590--36144628	2	20.0	2	94	5	71	51	0	0	48	1.00
36147605--36147642	19	2.0	20	89	5	60	47	0	0	52	1.00
36147937--36148014	20	4.1	19	71	19	54	28	2	1	67	1.11
36147969--36148015	20	2.3	20	82	10	60	23	2	2	72	1.06
36150444--36150474	14	2.2	14	94	0	53	25	0	6	67	1.14
36152016--36152075	28	2.1	28	87	6	86	26	13	30	30	1.94
36152062--36152194	59	2.3	59	82	3	171	38	5	25	30	1.78
36152061--36152163	30	3.5	31	72	17	85	39	6	23	30	1.80
36154041--36154099	6	9.8	6	73	14	50	55	1	3	38	1.26
36154056--36154083	14	2.0	14	100	0	56	57	0	7	35	1.26
36155093--36155126	16	2.1	17	88	5	52	32	2	2	61	1.26
36158101--36158414	105	3.0	105	89	1	443	27	24	14	33	1.94
36164964--36165003	20	2.0	20	100	0	80	45	10	5	40	1.60
36168384--36168413	9	3.3	9	100	0	60	0	66	23	10	1.21
36177066--36177393	146	2.2	148	86	4	459	29	18	11	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36180387--36180453	28	2.4	28	74	18	66	52	10	4	32	1.56
36184289--36184324	18	2.1	17	89	5	54	69	0	0	30	0.89
36199023--36199067	23	1.9	24	90	4	74	4	6	15	73	1.21
36209687--36209737	21	2.4	21	96	0	93	21	43	11	23	1.85
36210366--36210419	24	2.2	24	93	0	90	37	33	3	25	1.74
36210366--36210419	12	4.5	12	85	0	72	37	33	3	25	1.74
36210348--36210386	3	13.0	3	84	10	53	33	33	2	30	1.72
36211175--36211205	12	2.6	12	94	0	53	54	16	29	0	1.42
36212702--36212729	2	14.0	2	100	0	56	50	0	0	50	1.00
36213139--36213193	15	3.6	16	82	9	78	30	5	0	63	1.17
36221348--36221380	2	16.5	2	100	0	66	51	48	0	0	1.00
36227425--36227467	21	2.0	22	95	4	79	51	2	0	46	1.13
36227419--36227497	21	3.8	21	76	17	76	54	3	0	41	1.18
36238409--36238440	3	10.7	3	100	0	64	31	0	0	68	0.90
36239628--36239660	17	1.9	17	93	0	57	45	0	12	42	1.41
36251402--36251440	19	2.1	18	86	13	53	51	2	5	41	1.38
36261750--36261782	16	2.0	17	88	5	50	42	3	0	54	1.15
36269272--36269306	18	1.9	18	100	0	70	45	5	5	42	1.51
36273923--36274024	50	2.0	50	98	0	195	36	14	14	34	1.87
36276986--36277029	19	2.2	20	88	11	65	77	2	11	9	1.08
36293575--36293634	29	2.1	29	84	6	77	26	5	8	60	1.47
36297928--36297977	14	3.4	15	77	20	52	42	2	16	40	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36298122--36298154	6	5.5	6	92	0	57	48	0	30	21	1.50
36305085--36305137	20	2.5	22	76	17	58	32	3	1	62	1.24
36308478--36308671	69	2.8	69	85	0	253	39	13	20	26	1.89
36310638--36310790	69	2.2	69	89	2	227	39	12	19	28	1.88
36311488--36311674	48	3.7	48	73	13	146	40	20	18	19	1.91
36311522--36311629	54	2.0	54	85	3	146	40	22	19	17	1.91
36312444--36312487	23	2.0	23	82	8	56	38	6	6	47	1.57
36321753--36321777	6	4.2	6	100	0	50	84	0	0	16	0.63
36322304--36322338	15	2.4	15	90	4	54	34	20	0	45	1.51
36326987--36327030	21	2.1	21	91	0	70	13	56	6	22	1.61
36328536--36328598	25	2.6	26	82	12	80	31	0	7	60	1.26
36328676--36328726	23	2.3	21	77	12	50	39	0	3	56	1.18
36337026--36337059	14	2.4	14	85	0	50	67	5	2	23	1.26
36338344--36338372	14	2.1	14	93	6	51	55	6	0	37	1.27
36342526--36342589	29	2.2	29	83	5	76	54	1	9	34	1.42
36342563--36342605	19	2.2	20	84	12	54	58	2	0	39	1.11
36357412--36357472	30	2.0	30	87	6	88	22	29	0	47	1.52
36357780--36357843	32	2.0	32	96	0	119	34	7	6	51	1.56
36359231--36359271	17	2.4	18	80	12	50	56	0	2	41	1.13
36359344--36359374	16	1.9	16	93	0	53	32	6	0	61	1.21
36360016--36360047	16	2.0	16	93	0	55	0	6	3	90	0.53
36375913--36375979	35	1.9	35	84	0	89	23	29	4	41	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36377299--36377790	245	2.0	245	97	0	930	32	27	13	26	1.94
36390200--36390372	87	2.0	87	93	2	294	34	24	19	22	1.97
36394371--36394446	23	3.3	23	71	15	75	32	5	3	57	1.39
36394380--36394477	47	2.1	47	88	3	144	32	7	4	56	1.46
36394375--36394461	23	3.8	22	70	14	61	31	5	4	58	1.42
36418292--36418911	152	4.0	153	76	10	439	30	17	16	35	1.93
36418292--36419106	150	5.3	152	75	10	582	31	17	16	33	1.93
36432280--36432329	25	1.9	26	84	15	68	44	0	2	54	1.11
36433437--36433475	20	2.0	20	85	10	53	28	0	7	64	1.21
36438708--36438751	19	2.3	18	81	11	52	61	2	4	31	1.28
36439606--36439645	21	2.0	21	85	5	55	20	5	20	55	1.62
36440512--36440570	31	2.0	29	86	6	82	30	10	16	42	1.82
36441496--36441535	21	2.0	21	85	5	55	20	5	20	55	1.62
36445358--36445416	2	29.5	2	100	0	118	50	0	0	49	1.00
36448086--36448126	13	3.2	13	80	13	57	36	14	7	41	1.74
36456236--36456270	3	11.7	3	100	0	70	68	0	0	31	0.90
36464188--36464253	2	33.0	2	96	0	123	48	0	0	51	1.00
36478911--36478971	19	3.3	19	71	11	63	49	0	1	49	1.10
36480742--36480825	32	2.6	33	78	12	102	50	2	3	44	1.32
36483758--36483800	18	2.6	16	82	10	50	62	4	0	32	1.15
36484900--36484971	35	2.1	35	100	0	144	52	8	0	38	1.32
36489598--36489674	22	3.5	21	75	17	59	29	3	3	62	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36489900--36489948	26	1.9	26	87	4	73	42	0	8	48	1.32
36500431--36500490	23	2.5	24	83	8	86	30	1	6	61	1.31
36500426--36500500	19	4.2	17	68	20	55	30	1	5	62	1.25
36500644--36500678	18	2.0	17	88	5	52	51	11	5	31	1.61
36507765--36507840	18	4.2	18	85	6	91	34	18	22	25	1.96
36507756--36507840	36	2.4	36	80	4	91	34	18	23	23	1.97
36513447--36513475	3	9.7	3	100	0	58	34	0	0	65	0.93
36514641--36514699	29	2.0	29	90	0	91	32	10	11	45	1.74
36518053--36518084	2	16.5	2	93	6	57	50	0	0	50	1.00
36519246--36519513	143	1.9	143	94	1	475	34	14	11	39	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125