genome.fa.s6.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  3  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
785603--785735	70	1.9	67	87	4	194	35	11	9	43	1.74
786258--786318	29	2.1	30	81	9	72	42	0	1	55	1.09
791257--791302	14	3.0	16	68	12	51	23	30	0	45	1.53
791088--791404	166	1.9	159	79	14	347	22	37	0	39	1.61
792161--792205	21	2.1	21	83	0	54	44	8	2	44	1.47
792931--793005	6	12.7	6	74	13	57	46	2	2	48	1.30
792929--793008	11	6.9	11	73	12	54	47	2	2	47	1.29
792943--793004	16	3.9	16	81	10	65	50	3	3	43	1.34
795496--795543	23	2.1	23	85	11	64	6	20	2	70	1.19
795551--795632	13	6.6	12	72	16	51	50	1	1	47	1.16
801627--801674	23	2.1	23	85	11	64	6	20	2	70	1.19
801682--801763	13	6.6	12	74	16	60	51	1	1	46	1.16
803397--803480	30	2.8	30	83	0	105	35	14	7	42	1.73
807783--807835	21	2.5	21	81	0	61	52	11	3	32	1.55
810878--810925	17	2.7	17	78	15	53	31	2	0	66	1.03
823856--823925	31	2.2	32	89	2	106	37	7	7	48	1.58
826216--826255	19	2.2	19	90	4	64	35	2	0	62	1.09
826327--826358	16	1.9	17	93	6	57	15	0	3	81	0.82
826301--826359	26	2.2	27	82	8	68	22	0	1	76	0.88
833146--833178	2	17.0	2	93	6	59	48	0	0	51	1.00
835613--835763	78	1.9	78	86	2	214	19	7	25	47	1.76
844770--844813	15	2.8	16	86	13	56	72	2	0	25	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
844783--844837	23	2.6	21	81	13	67	72	0	0	27	0.85
849272--849342	31	2.3	30	83	4	88	45	5	15	33	1.70
850715--850789	35	2.2	33	84	13	91	45	13	0	41	1.43
850898--850962	31	2.1	31	85	0	85	27	6	15	50	1.67
850943--850985	22	2.0	22	90	0	68	25	6	16	51	1.69
855371--855395	13	1.9	13	100	0	50	36	8	0	56	1.29
860314--861425	225	4.8	228	81	9	999	31	5	18	43	1.74
860662--861533	225	3.6	242	81	8	692	32	6	18	43	1.75
860758--861533	225	3.3	244	82	7	703	31	6	18	43	1.76
866603--866649	23	2.0	23	88	8	69	55	6	6	31	1.51
867114--867173	18	3.2	18	83	9	68	53	5	3	38	1.39
871331--871744	164	2.6	153	75	12	354	25	18	14	42	1.88
871481--871851	170	2.2	163	79	8	399	27	18	12	41	1.86
875942--875986	20	2.2	20	84	7	56	55	2	0	42	1.12
880343--880393	5	10.2	5	95	0	93	19	78	0	1	0.85
892741--892792	16	3.1	16	74	17	52	63	3	0	32	1.12
892765--892814	20	2.5	20	84	12	66	72	4	2	22	1.12
897014--897049	18	2.1	18	89	5	56	52	19	2	25	1.59
900630--900682	17	3.2	16	76	10	61	30	32	20	16	1.95
902372--902403	11	2.9	11	95	0	55	31	0	0	68	0.90
902416--902462	20	2.4	19	86	10	60	34	0	4	61	1.15
903992--904016	8	3.1	8	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
912589--912627	3	13.0	3	100	0	78	0	33	0	66	0.92
912939--912971	16	2.0	17	94	5	59	42	0	0	57	0.98
919763--919964	64	2.9	72	84	10	246	32	26	8	32	1.87
921287--921339	26	2.0	27	85	10	74	39	9	13	37	1.77
921395--921426	2	16.5	2	93	6	57	50	0	0	50	1.00
921699--921731	12	2.8	12	86	13	50	36	0	0	63	0.95
927442--927481	3	13.3	3	100	0	80	67	0	0	32	0.91
927796--927845	17	2.9	16	80	11	55	30	0	4	66	1.10
934368--934420	27	2.0	26	85	3	70	50	13	13	22	1.75
935438--935502	23	2.9	22	73	13	69	41	1	3	53	1.25
935871--935910	21	1.9	21	89	0	62	55	10	7	27	1.60
935870--935917	21	2.3	20	82	10	60	58	8	8	25	1.55
936668--936725	29	2.0	29	83	6	73	44	8	8	37	1.66
942169--942202	17	2.0	17	94	0	59	55	0	0	44	0.99
942761--942810	21	2.4	20	83	12	57	60	2	0	38	1.09
943098--943236	62	2.3	59	84	9	165	45	11	0	42	1.45
943128--943264	60	2.2	62	80	6	163	48	10	0	40	1.44
943493--943572	32	2.5	33	93	2	135	33	17	21	27	1.96
947523--947547	2	12.5	2	100	0	50	48	0	0	52	1.00
948412--948449	19	2.0	19	89	0	58	7	21	2	68	1.28
950544--950583	10	3.9	10	83	6	53	40	0	0	60	0.97
950545--950601	21	2.6	23	78	8	66	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
953111--953259	48	3.1	47	78	9	147	28	16	20	34	1.94
953547--953607	31	2.0	31	86	0	86	45	8	4	40	1.55
955788--956152	126	2.9	126	87	2	509	43	19	17	19	1.88
962574--962620	23	2.0	23	87	0	67	21	8	10	59	1.57
962545--962657	54	2.1	53	80	6	120	21	14	9	54	1.68
962545--962657	56	2.0	54	83	5	136	21	14	9	54	1.68
967137--967296	79	2.0	79	97	0	302	37	13	14	35	1.85
969854--969972	53	2.2	54	86	6	159	50	16	12	20	1.77
970098--970133	18	2.0	18	94	0	63	50	19	0	30	1.48
975517--975551	9	3.9	9	88	0	52	8	34	0	57	1.29
978398--978423	2	13.0	2	100	0	52	50	0	0	50	1.00
979664--979690	3	9.0	3	100	0	54	66	0	0	33	0.92
980975--981016	2	21.0	2	100	0	84	50	0	0	50	1.00
988564--988628	33	2.0	33	96	0	121	26	23	16	33	1.96
992320--992616	148	2.0	149	93	0	515	44	10	9	35	1.71
993781--993827	22	2.2	21	85	11	60	14	12	4	68	1.36
996615--996656	18	2.3	19	80	12	52	73	4	0	21	1.01
996817--996858	22	1.9	22	85	0	57	71	7	7	14	1.29
1003938--1004080	68	2.1	69	93	1	243	52	12	3	31	1.56
1004047--1004217	83	2.0	85	84	5	222	49	15	8	26	1.74
1007939--1007971	15	2.2	15	89	10	50	30	0	0	69	0.88
1009820--1009879	19	3.1	19	78	2	66	65	3	0	31	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1012956--1013085	58	2.2	58	90	1	197	30	2	35	32	1.70
1012994--1013084	29	3.1	29	65	6	67	28	2	36	32	1.70
1013060--1013261	30	6.8	30	83	5	225	35	3	22	38	1.72
1013359--1013673	162	1.9	162	94	1	551	45	13	15	26	1.82
1014490--1014521	9	3.6	9	95	0	55	34	0	6	59	1.23
1015220--1015275	6	9.2	6	84	11	78	53	0	1	44	1.11
1015220--1015285	31	2.2	29	89	5	96	53	1	1	43	1.19
1022884--1022958	37	2.0	37	84	5	98	30	20	9	40	1.84
1030104--1030164	22	2.9	19	73	21	50	65	1	27	4	1.22
1030122--1030165	22	2.0	23	90	4	72	65	0	29	4	1.12
1033939--1033983	21	2.1	21	83	0	54	57	6	2	33	1.37
1033946--1033988	21	2.0	21	86	0	59	51	4	2	41	1.35
1033946--1033999	21	2.5	20	77	11	54	48	5	1	44	1.37
1048655--1048709	15	3.5	16	72	18	53	67	3	0	29	1.08
1053223--1053286	26	2.6	24	76	9	74	46	0	0	53	1.00
1053236--1053280	22	2.1	21	87	4	63	42	0	0	57	0.98
1053223--1053288	25	2.6	25	83	6	89	45	0	0	54	0.99
1053931--1053997	30	2.2	31	81	7	75	49	4	1	44	1.31
1054080--1054111	15	2.1	16	94	5	57	59	0	0	40	0.97
1054391--1054456	21	3.3	20	78	14	57	28	1	22	46	1.61
1061098--1061126	15	1.9	15	100	0	58	34	37	0	27	1.57
1062893--1062924	15	2.1	15	100	0	64	15	21	12	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1064064--1064115	14	3.6	14	84	2	68	59	0	1	38	1.08
1069963--1070022	30	2.0	31	84	15	81	48	5	6	40	1.51
1072221--1072255	12	2.9	12	100	0	70	77	0	22	0	0.78
1076531--1076560	6	5.0	6	100	0	60	33	0	16	50	1.46
1078425--1078498	37	2.0	39	82	12	93	40	0	0	59	0.97
1078934--1081464	361	7.0	361	98	0	4825	36	14	17	32	1.90
1081810--1081895	43	2.0	43	93	2	147	44	12	15	27	1.83
1084776--1084836	25	2.5	25	75	2	61	54	1	1	42	1.20
1086904--1086934	3	10.3	3	100	0	62	0	32	0	67	0.91
1087887--1088048	61	2.7	60	81	5	177	54	9	12	22	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125