genome.fa.s6.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  109  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33183327--33183361	15	2.3	15	90	0	52	22	0	28	48	1.51
33183338--33183405	21	3.2	21	93	2	118	23	0	32	44	1.54
33183796--33183843	18	2.7	17	81	15	53	70	0	20	8	1.12
33190308--33190354	7	6.9	7	87	4	51	38	23	21	17	1.93
33190329--33190354	7	3.7	7	100	0	52	30	26	26	15	1.96
33190306--33190347	20	2.1	20	86	0	57	42	21	19	16	1.89
33190341--33190398	10	5.7	10	77	2	53	29	31	22	17	1.96
33190435--33190464	15	2.0	15	93	0	51	20	3	33	43	1.68
33190448--33190515	21	3.2	21	87	2	100	23	0	32	44	1.54
33190886--33190960	11	6.5	11	75	14	71	70	0	24	5	1.07
33194292--33194324	17	1.9	17	93	0	57	57	3	0	39	1.14
33195623--33195735	51	2.2	51	82	3	129	39	8	18	32	1.82
33199367--33199453	46	1.9	44	86	4	120	40	21	11	26	1.87
33214669--33214700	14	2.3	14	100	0	64	43	0	6	50	1.27
33214861--33214890	6	5.0	6	100	0	60	0	16	16	66	1.25
33218069--33218105	19	2.1	19	85	10	51	40	13	0	45	1.43
33221581--33221623	19	2.2	20	87	4	61	62	2	2	32	1.20
33229868--33229926	30	2.0	30	96	0	109	35	11	22	30	1.90
33230170--33230200	15	2.1	15	93	0	53	54	9	0	35	1.33
33233663--33233703	16	2.4	17	81	18	50	63	2	2	31	1.20
33242409--33242447	17	2.3	17	86	8	53	82	2	0	15	0.79
33242519--33242608	28	3.2	28	81	7	85	63	4	3	28	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33242597--33242651	20	2.8	20	72	22	53	63	0	3	32	1.12
33242838--33242903	28	2.3	30	79	12	75	28	4	0	66	1.11
33242839--33242901	10	6.4	10	81	7	58	26	4	0	68	1.10
33242838--33242927	29	3.2	29	78	10	82	26	4	1	67	1.16
33242822--33242927	9	11.4	9	71	13	63	24	3	2	68	1.19
33245063--33245095	15	2.1	16	88	5	50	63	0	3	33	1.10
33250935--33251024	30	2.9	30	81	6	110	51	12	5	31	1.62
33255059--33255101	18	2.4	17	81	14	50	69	6	0	23	1.12
33258553--33258615	30	2.1	31	87	3	92	61	15	4	17	1.50
33261102--33261127	11	2.4	11	100	0	52	42	0	0	57	0.98
33263551--33263635	24	3.6	23	82	6	82	12	17	40	29	1.87
33263581--33263672	12	7.8	12	79	1	78	15	19	38	27	1.92
33263581--33263638	24	2.5	24	94	2	100	13	17	37	31	1.89
33271535--33271563	2	14.5	2	100	0	58	48	0	0	51	1.00
33278543--33278617	28	2.7	26	78	17	71	32	4	1	62	1.22
33278556--33278614	29	2.1	27	84	6	73	35	5	0	59	1.20
33280767--33280801	18	1.9	18	94	0	61	40	5	28	25	1.78
33282355--33282462	9	11.8	9	71	17	55	66	0	0	31	1.04
33282361--33282473	46	2.4	47	78	15	119	66	0	0	31	1.04
33282567--33282645	23	3.6	22	75	13	83	37	1	25	35	1.64
33283249--33283282	17	1.9	18	88	5	52	64	17	0	17	1.29
33283466--33283521	29	1.9	29	82	7	69	69	14	16	0	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33284761--33284831	12	5.9	11	78	16	54	23	4	1	70	1.13
33285074--33285136	30	2.1	31	82	14	78	47	1	3	47	1.27
33285340--33285736	198	2.0	197	89	3	611	50	8	20	20	1.73
33286032--33286077	18	2.3	20	82	10	51	23	0	4	71	1.03
33287093--33287168	14	5.2	14	75	12	55	21	7	1	69	1.21
33288494--33288538	22	2.0	22	83	8	56	37	4	0	57	1.19
33289682--33289740	18	3.2	18	78	9	57	66	3	1	28	1.18
33289698--33289740	10	4.7	9	80	13	52	67	0	2	30	1.03
33289756--33289782	2	13.5	2	100	0	54	48	0	0	51	1.00
33291211--33291278	29	2.4	28	85	7	91	30	4	0	64	1.13
33291214--33291275	30	2.1	29	81	3	70	33	4	0	61	1.17
33292740--33292777	18	2.1	18	90	0	58	34	0	5	60	1.19
33298138--33298202	21	3.0	21	77	8	67	64	4	1	29	1.22
33298331--33298373	10	4.4	10	80	13	54	67	2	2	27	1.15
33298340--33298385	20	2.2	21	88	3	67	65	2	4	28	1.23
33298330--33298385	29	1.9	28	82	13	69	64	1	3	30	1.21
33305743--33305806	19	3.4	18	79	16	76	45	1	6	46	1.37
33306101--33306159	29	2.0	30	83	3	75	28	8	15	47	1.74
33306293--33306381	31	3.0	30	83	4	108	40	13	10	35	1.78
33307128--33307159	16	2.0	16	100	0	64	68	0	0	31	0.90
33307990--33308047	30	1.9	30	82	3	71	51	8	3	36	1.49
33313299--33313368	35	2.1	33	83	5	86	54	5	5	34	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33320416--33320451	17	2.1	18	89	5	56	77	0	2	19	0.88
33321423--33321458	2	18.0	2	94	0	63	50	2	0	47	1.15
33324007--33324043	13	2.8	14	84	12	51	16	24	0	59	1.37
33325581--33325606	3	8.7	3	100	0	52	0	34	0	65	0.93
33338039--33338098	25	2.4	25	80	8	68	26	5	13	55	1.59
33349115--33349165	26	2.0	26	100	0	102	41	27	15	15	1.88
33358707--33358732	7	3.7	7	100	0	52	30	0	0	69	0.89
33360641--33360810	59	2.8	59	85	1	214	22	12	10	53	1.69
33361020--33361084	31	2.1	31	88	5	96	46	9	15	29	1.77
33361168--33361211	9	4.7	9	82	5	52	31	2	0	65	1.05
33362869--33362926	30	1.9	31	89	3	91	29	12	12	46	1.77
33363397--33363566	60	2.9	57	74	9	155	52	10	12	24	1.70
33363902--33363951	15	3.5	15	73	15	52	32	20	36	12	1.89
33364139--33364200	4	15.0	4	79	12	54	70	0	29	0	0.87
33364534--33364576	21	2.1	21	86	4	61	25	2	13	58	1.48
33364548--33364720	96	1.8	91	89	6	265	39	1	12	46	1.49
33365876--33365913	12	3.1	13	81	14	53	26	28	0	44	1.54
33366063--33366108	22	2.1	22	100	0	92	32	17	4	45	1.68
33366067--33366116	22	2.5	20	87	12	68	34	20	4	42	1.70
33369719--33369765	21	2.2	21	85	11	69	25	36	12	25	1.92
33372980--33373043	29	2.2	28	88	2	92	4	34	0	60	1.17
33373218--33373269	27	1.9	27	88	0	77	13	32	19	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33386508--33386605	43	2.3	42	82	3	115	24	28	19	27	1.98
33386886--33386958	21	3.5	21	76	0	74	0	39	21	38	1.54
33400280--33400327	25	1.9	25	100	0	96	54	8	2	35	1.42
33408165--33408237	31	2.3	31	85	2	92	52	13	1	32	1.50
33412692--33412785	30	3.1	30	79	11	104	22	11	10	55	1.66
33412692--33412806	30	3.8	30	78	11	103	24	11	10	53	1.67
33412692--33412806	58	1.9	58	84	10	151	24	11	10	53	1.67
33413009--33413197	59	3.2	59	82	3	202	51	10	11	26	1.69
33415516--33415578	30	2.1	30	84	0	81	33	12	9	44	1.75
33415529--33415595	30	2.3	30	94	2	118	26	13	7	52	1.67
33431214--33431255	22	1.9	22	85	0	57	54	0	0	45	0.99
33431289--33431333	22	2.0	22	87	8	65	62	0	2	35	1.08
33431275--33431339	29	2.3	28	81	5	69	58	0	1	40	1.07
33442802--33442922	23	5.2	23	81	11	147	12	24	21	41	1.88
33442802--33442922	48	2.6	47	86	10	160	12	24	21	41	1.88
33442887--33442961	39	1.9	39	89	5	116	13	22	18	45	1.84
33444190--33444223	17	2.0	17	88	11	52	35	0	14	50	1.44
33448674--33448703	6	5.0	6	95	0	51	13	33	53	0	1.40
33456045--33456091	22	2.1	22	100	0	94	53	8	0	38	1.32
33463716--33463752	16	2.3	17	81	13	51	72	0	0	27	0.84
33466574--33466615	20	2.1	20	86	0	57	69	0	0	30	0.89
33466585--33466648	20	3.1	20	79	4	74	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33467093--33467120	5	5.6	5	100	0	56	17	0	0	82	0.68
33487771--33487825	21	2.6	21	88	5	76	27	1	5	65	1.25
33489630--33489712	42	2.0	42	97	0	157	37	13	18	31	1.89
33489813--33489884	24	3.0	24	89	0	99	56	11	6	25	1.58
33490132--33490171	14	3.1	14	73	26	52	52	7	25	15	1.68
33492705--33492730	13	2.0	13	100	0	52	61	0	0	38	0.96
33504215--33504318	53	1.9	54	90	1	165	30	8	9	50	1.65
33504280--33504348	34	2.0	34	82	0	84	28	10	13	47	1.74
33505865--33505910	24	1.9	23	86	8	65	54	6	4	34	1.46
33511123--33511153	14	2.1	15	94	5	55	64	9	6	19	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125