genome.fa.s6.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  37  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11047910--11047946	18	2.0	20	84	10	51	16	8	0	75	1.02
11056139--11056169	7	4.4	7	100	0	62	25	0	74	0	0.82
11058935--11059019	41	2.0	42	88	6	129	57	4	9	28	1.50
11065689--11065732	21	2.1	21	83	8	54	38	0	11	50	1.39
11065863--11065952	37	2.4	36	80	10	92	43	1	5	50	1.33
11068563--11068660	26	3.8	26	74	5	72	31	23	20	24	1.98
11076382--11076487	26	4.1	26	70	9	81	32	24	17	25	1.97
11081663--11081698	18	2.0	18	88	0	54	61	0	11	27	1.30
11082364--11082397	12	2.8	12	95	0	59	14	29	14	41	1.86
11083268--11083324	19	2.9	19	79	10	62	63	1	0	35	1.05
11083294--11083347	28	1.9	28	85	7	74	66	0	3	29	1.09
11083906--11083953	19	2.5	20	75	21	50	54	0	0	45	0.99
11084019--11084077	29	2.0	30	84	12	79	54	10	5	30	1.56
11092627--11092656	3	10.0	3	92	0	51	0	63	0	36	0.95
11092627--11092659	12	2.8	12	95	0	57	0	60	0	39	0.97
11102279--11102322	22	2.0	22	95	0	79	65	0	4	29	1.12
11106178--11106213	15	2.4	15	90	0	54	66	0	33	0	0.92
11106653--11106699	17	2.8	17	83	0	58	21	17	12	48	1.79
11108861--11108937	40	1.9	41	89	2	120	28	16	27	27	1.97
11117514--11117560	23	1.9	25	83	12	62	53	14	4	27	1.60
11125718--11125789	26	2.8	26	80	4	83	26	20	23	29	1.99
11130737--11130824	38	2.4	37	79	11	99	38	12	18	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11130743--11130815	38	1.9	38	86	5	103	36	12	19	31	1.88
11139303--11139393	3	32.0	3	71	18	52	61	4	4	29	1.35
11139303--11139384	17	4.8	17	74	14	69	60	4	4	29	1.38
11139629--11139679	20	2.7	18	85	11	66	78	1	3	15	0.99
11141260--11141368	50	2.2	50	81	4	123	27	17	16	38	1.91
11141279--11141854	100	5.8	100	75	3	433	27	18	17	36	1.93
11141282--11141838	200	2.8	199	78	5	491	26	18	17	37	1.93
11141484--11141845	50	7.2	50	65	9	164	25	18	17	37	1.93
11142019--11142158	50	2.8	50	72	4	131	27	16	21	35	1.95
11141954--11142148	100	2.0	100	84	4	259	25	20	20	34	1.96
11144909--11144947	13	3.0	13	80	0	51	17	2	12	66	1.35
11158887--11158960	34	2.2	35	82	4	89	22	18	10	47	1.80
11160035--11160093	26	2.3	26	78	0	64	28	20	23	27	1.99
11161947--11162043	3	34.0	3	72	17	64	61	4	4	29	1.33
11161980--11162022	17	2.5	17	88	7	61	55	4	6	32	1.47
11161947--11162043	16	5.7	17	75	14	76	61	4	4	29	1.33
11162289--11162339	20	2.7	18	85	11	66	78	1	3	15	0.99
11162529--11162585	30	1.9	30	85	7	80	64	5	8	21	1.41
11163941--11164516	100	5.8	100	77	3	514	26	18	18	36	1.94
11163944--11164510	300	1.9	300	86	2	807	26	18	18	36	1.94
11163941--11164812	50	17.6	50	66	12	152	26	19	18	35	1.95
11164616--11164810	100	2.0	100	86	4	277	26	20	19	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11167591--11167629	13	3.0	13	80	0	51	17	2	12	66	1.35
11172974--11173011	17	2.2	17	86	9	51	15	13	15	55	1.70
11178637--11178694	3	19.0	3	77	10	55	68	3	1	25	1.14
11178637--11178689	22	2.3	23	87	3	81	69	3	1	24	1.15
11178637--11178694	19	3.0	19	82	2	62	68	3	1	25	1.14
11178930--11178978	4	12.8	4	83	12	50	77	0	2	20	0.87
11178931--11178978	10	4.5	11	80	15	57	77	0	2	20	0.88
11178928--11178979	17	3.0	17	85	2	68	76	0	3	19	0.93
11181870--11181984	48	2.4	48	95	1	212	23	10	20	45	1.82
11186296--11186385	40	2.2	40	80	3	101	33	7	13	45	1.72
11186324--11186385	20	3.1	20	85	0	88	32	8	11	48	1.68
11188638--11188701	24	2.7	25	83	9	89	28	26	21	23	1.99
11188609--11188701	48	1.9	49	84	2	125	32	24	18	24	1.97
11192454--11192520	32	2.1	32	94	0	116	25	4	25	44	1.72
11192809--11192857	20	2.4	21	77	16	57	28	4	4	63	1.31
11193528--11193565	20	1.9	19	89	5	58	34	10	5	50	1.59
11198652--11198737	44	2.0	43	90	2	136	45	13	22	18	1.85
11199720--11200229	49	10.4	49	76	4	375	40	18	23	17	1.91
11207717--11207773	19	2.8	20	81	7	71	33	5	12	49	1.63
11207713--11207789	20	3.8	20	81	8	84	35	6	11	46	1.66
11212095--11212209	9	12.1	9	68	15	54	33	1	6	57	1.36
11212121--11212202	19	4.4	18	77	17	62	35	0	8	56	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11217562--11217606	24	1.9	24	82	13	58	35	4	4	55	1.40
11225065--11225302	51	4.6	51	85	2	244	32	13	22	31	1.93
11225072--11225302	102	2.2	104	83	3	279	31	13	22	32	1.93
11232270--11232501	51	4.6	51	82	8	271	31	15	23	30	1.95
11232278--11232416	45	3.0	45	84	6	170	30	15	23	30	1.95
11232278--11232455	96	1.9	96	91	0	293	30	15	23	30	1.95
11260572--11260621	21	2.5	20	76	20	52	46	0	0	54	1.00
11265136--11265161	12	2.2	12	100	0	52	34	7	15	42	1.75
11267116--11267159	5	9.0	5	82	5	54	20	2	2	75	1.03
11267537--11267570	3	11.3	3	87	0	50	38	0	0	61	0.96
11273512--11273546	13	2.8	12	83	8	52	54	17	0	28	1.43
11276433--11276463	16	1.9	16	93	0	53	67	16	6	9	1.39
11281589--11281629	17	2.4	17	80	19	50	51	17	17	14	1.77
11281697--11281797	45	2.2	45	100	0	202	3	23	13	58	1.53
11293954--11293992	18	2.2	18	85	0	51	48	0	30	20	1.50
11299701--11299774	27	2.8	27	81	2	78	40	20	13	25	1.89
11302305--11302345	12	3.5	12	83	3	57	75	0	7	17	1.02
11302305--11302345	17	2.4	17	88	12	57	75	0	7	17	1.02
11306962--11307010	24	2.0	25	84	11	66	2	20	0	77	0.87
11306959--11307009	12	4.4	11	81	18	59	1	17	0	80	0.81
11308637--11308672	15	2.3	16	90	4	56	47	19	2	30	1.64
11325892--11325924	15	2.1	16	88	5	50	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11326039--11326168	69	1.9	69	87	3	190	31	19	13	35	1.91
11331869--11331938	25	2.9	23	78	16	61	47	0	1	51	1.09
11332485--11332527	20	2.1	20	82	4	50	58	2	0	39	1.11
11334751--11334793	18	2.4	18	100	0	86	37	16	6	39	1.75
11334767--11334835	27	2.5	28	73	2	68	33	24	7	34	1.83
11343246--11343275	15	2.0	15	100	0	60	40	0	20	40	1.52
11343692--11344227	272	2.0	272	99	0	1063	29	24	16	29	1.97
11348936--11348981	25	1.9	25	86	8	69	32	4	6	56	1.45
11355369--11355413	20	2.3	19	88	3	63	77	2	6	13	1.05
11355369--11355415	19	2.5	20	89	6	71	74	2	6	17	1.12
11355426--11355459	13	2.7	13	90	4	52	11	8	0	79	0.94
11355463--11355504	16	2.5	17	92	3	68	16	4	4	73	1.17
11355438--11355507	5	12.4	5	83	8	50	17	5	4	72	1.20
11356406--11356443	18	2.2	17	86	9	51	78	2	15	2	0.97
11357527--11357572	25	1.9	25	86	8	69	32	4	6	56	1.45
11358581--11358849	131	2.1	131	96	0	493	41	4	20	33	1.73
11363234--11363300	13	5.2	13	77	0	62	38	14	22	23	1.92
11364973--11365005	13	2.6	13	90	4	50	0	39	0	60	0.97
11365078--11365133	24	2.3	24	81	6	69	25	35	26	12	1.91
11367234--11367294	32	1.9	30	84	15	79	45	6	16	31	1.73
11372747--11372792	20	2.2	20	88	3	65	47	0	0	52	1.00
11372747--11372801	21	2.7	20	80	8	67	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11379537--11379571	14	2.5	14	95	0	61	48	2	14	34	1.58
11403478--11403543	17	3.9	17	75	0	60	19	18	13	48	1.81
11414643--11414685	22	1.9	23	90	4	70	39	6	6	46	1.58
11415117--11415285	87	1.9	87	90	2	268	49	2	19	28	1.61
11418098--11418410	156	2.0	156	98	0	608	30	27	23	19	1.98
11428875--11429200	160	2.0	160	94	1	573	31	22	15	30	1.95
11430045--11430232	30	6.4	28	74	14	114	35	6	22	35	1.81
11430117--11430271	60	2.6	59	81	8	179	37	7	18	36	1.79
11430104--11430271	90	1.9	90	85	9	236	36	8	19	35	1.82
11430117--11430271	30	5.2	29	80	9	161	37	7	18	36	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125