genome.fa.s6.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Length:  39602670

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   

This is table  107  of  125  ( 14887 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32571717--32571743	2	13.5	2	100	0	54	48	0	0	51	1.00
32576368--32576392	11	2.3	11	100	0	50	48	36	0	16	1.46
32583631--32583700	32	2.3	31	85	9	92	50	1	1	47	1.19
32583646--32583707	31	2.0	31	87	6	90	48	0	1	50	1.10
32584921--32584962	20	2.0	22	90	9	70	52	0	0	47	1.00
32584887--32584959	29	2.4	31	95	4	132	46	0	0	53	1.00
32584912--32584968	20	3.0	20	74	23	59	47	1	0	50	1.11
32593624--32593680	28	2.1	26	81	12	62	28	12	17	42	1.85
32603130--32603176	24	1.9	25	82	4	60	36	10	4	48	1.57
32604796--32604835	19	2.1	19	85	0	53	52	10	2	35	1.48
32604960--32605035	31	2.4	32	76	6	84	44	2	2	50	1.30
32605634--32605685	12	4.4	12	78	4	61	40	17	11	30	1.85
32605625--32605703	35	2.2	36	81	2	97	40	17	10	31	1.83
32610075--32610114	3	13.7	3	89	5	64	32	0	2	65	1.06
32610861--32610900	21	2.0	21	90	9	66	60	0	2	37	1.11
32624386--32624462	20	3.5	20	67	24	55	5	6	19	68	1.31
32624401--32624438	17	2.2	18	90	4	60	7	7	13	71	1.31
32624400--32624459	28	2.1	28	81	0	66	6	6	15	71	1.28
32624406--32624462	20	3.1	19	85	7	64	5	5	19	70	1.26
32624434--32624503	23	3.3	21	78	9	70	4	5	21	68	1.28
32624436--32624545	44	2.5	44	82	2	114	6	5	20	68	1.32
32624474--32624571	44	2.2	43	78	8	99	8	4	19	68	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32624685--32624769	38	2.2	38	80	12	93	28	0	7	64	1.19
32624681--32624776	49	2.0	48	83	6	122	28	0	7	64	1.20
32632247--32632289	19	2.3	19	87	0	59	32	6	4	55	1.47
32636540--32636573	10	3.3	10	88	8	50	44	0	2	52	1.16
32637018--32637043	13	2.0	13	100	0	52	23	7	0	69	1.14
32644106--32644136	16	1.9	16	100	0	62	35	19	12	32	1.90
32648672--32648709	19	2.0	20	84	5	51	68	2	0	28	1.03
32652823--32652975	30	5.2	30	71	23	144	32	2	29	35	1.71
32652778--32652975	59	3.4	59	90	3	303	33	2	30	32	1.71
32652751--32652987	29	8.1	27	70	22	126	33	2	29	33	1.73
32653222--32653284	32	2.0	32	84	12	85	61	3	12	22	1.45
32654733--32654795	16	3.8	17	75	6	67	55	4	0	39	1.21
32654736--32654788	27	2.0	27	84	0	70	56	5	0	37	1.23
32657867--32657918	25	2.1	25	82	7	61	44	0	9	46	1.36
32659989--32660021	6	5.5	6	100	0	66	66	0	0	33	0.92
32669810--32669839	2	15.0	2	100	0	60	50	0	0	50	1.00
32674072--32674142	35	2.0	36	86	8	101	54	5	5	33	1.47
32690983--32691031	24	2.1	24	88	3	73	53	4	6	36	1.45
32691115--32691154	18	2.2	18	95	0	71	42	22	0	35	1.54
32697852--32702143	338	12.9	338	86	4	5465	38	11	13	36	1.80
32696873--32702485	997	5.7	979	85	5	7159	38	11	13	36	1.80
32711977--32712129	62	2.5	61	76	9	150	43	7	15	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32713735--32713759	12	2.1	12	100	0	50	24	0	16	60	1.36
32714938--32715013	36	2.2	33	79	6	80	60	11	5	22	1.51
32723016--32723070	29	2.0	29	85	7	78	23	3	14	58	1.52
32728065--32728091	3	9.0	3	100	0	54	66	0	0	33	0.92
32729172--32729205	2	17.0	2	100	0	68	50	0	0	50	1.00
32729341--32729405	29	2.2	28	78	10	69	44	6	7	41	1.58
32736141--32736201	24	2.5	24	91	0	104	19	22	27	29	1.98
32737487--32737570	42	2.0	42	90	0	132	25	16	30	27	1.97
32746750--32746788	19	2.0	19	85	5	51	51	5	2	41	1.38
32748339--32748386	21	2.3	20	86	10	69	45	25	0	29	1.53
32753682--32753745	33	1.9	33	87	6	94	59	1	0	39	1.07
32753685--32753751	12	5.8	12	75	18	61	55	1	0	43	1.09
32760266--32760318	25	2.1	25	100	0	106	24	22	18	33	1.97
32788371--32788396	1	26.0	1	100	0	52	0	100	0	0	0.00
32788685--32788755	28	2.5	28	76	17	83	50	1	0	47	1.09
32795384--32795484	23	4.3	23	77	16	100	39	21	28	9	1.86
32795381--32795444	23	2.6	25	85	9	105	40	21	26	10	1.86
32795356--32795464	48	2.3	47	81	10	132	39	21	27	11	1.88
32795359--32795484	48	2.7	46	80	14	125	38	20	29	11	1.87
32806936--32806981	24	1.9	24	82	8	58	0	21	23	54	1.45
32807657--32807697	15	2.5	17	80	11	50	63	4	2	29	1.28
32809893--32812030	757	2.8	755	83	5	2606	36	14	11	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32814307--32814368	29	2.1	29	90	3	97	51	0	0	48	1.00
32815894--32815934	21	2.0	21	86	9	59	53	0	0	46	1.00
32815851--32815931	28	2.9	28	85	5	94	54	1	0	44	1.08
32817156--32817212	29	1.9	30	86	10	82	50	7	3	38	1.46
32817288--32817321	16	2.2	16	89	5	52	64	0	0	35	0.94
32817283--32817326	22	1.9	24	81	9	56	61	0	2	36	1.09
32816181--32818758	790	3.3	783	81	6	3070	34	16	12	36	1.86
32820523--32820568	22	2.0	24	83	8	60	39	0	0	60	0.97
32820529--32820566	16	2.4	16	82	13	51	39	0	0	60	0.97
32821597--32821666	22	3.1	21	82	12	77	32	0	4	62	1.14
32821605--32821666	22	2.8	21	85	11	79	32	0	3	64	1.09
32824636--32824725	41	2.2	41	80	2	101	52	6	10	31	1.61
32836165--32836192	2	14.0	2	100	0	56	50	0	0	50	1.00
32836846--32836881	17	2.1	18	89	5	56	58	0	0	41	0.98
32837193--32837246	2	27.0	2	100	0	108	50	0	0	50	1.00
32838055--32838089	18	1.9	18	94	0	61	54	2	0	42	1.15
32858189--32858218	15	1.9	16	93	6	53	13	0	3	83	0.77
32860596--32860632	19	1.9	20	88	5	58	51	2	2	43	1.30
32861701--32861757	21	2.8	20	82	10	64	36	1	0	61	1.07
32861735--32861764	11	2.7	11	94	0	51	36	0	0	63	0.95
32865003--32865044	11	3.9	11	81	3	50	40	0	4	54	1.21
32865005--32865066	17	3.8	17	80	6	74	40	0	4	54	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32865003--32865044	22	2.0	22	85	4	59	40	0	4	54	1.21
32865009--32865091	27	3.1	27	76	0	76	44	2	4	48	1.37
32865022--32865075	16	3.3	16	79	5	54	42	1	1	53	1.22
32865824--32865876	27	1.9	28	88	11	83	50	0	1	47	1.12
32866974--32867030	30	1.9	30	89	7	89	38	15	1	43	1.57
32867012--32867379	30	12.4	28	64	23	89	32	27	2	36	1.72
32867013--32867173	29	5.3	30	63	28	72	31	31	1	36	1.66
32867014--32867379	59	6.2	59	83	6	447	31	28	3	36	1.72
32867123--32867276	30	5.2	29	69	21	97	35	28	1	34	1.69
32871554--32871839	58	4.9	55	82	8	248	34	4	29	31	1.77
32871594--32871839	28	8.5	29	71	21	178	35	2	28	33	1.71
32871594--32871841	59	4.3	58	91	3	349	35	2	28	33	1.71
32871594--32871854	29	9.0	27	69	20	120	34	2	29	33	1.72
32871996--32872305	160	1.9	161	90	1	489	41	13	18	26	1.87
32872630--32872680	27	1.9	27	84	11	70	5	49	29	15	1.68
32873894--32873984	6	15.0	6	75	11	78	48	1	2	48	1.21
32873920--32873993	17	4.6	16	81	11	89	58	1	1	39	1.15
32873919--32874004	31	2.9	31	86	5	106	56	2	1	39	1.19
32873958--32874022	28	2.3	28	83	0	76	60	4	1	33	1.27
32878344--32878376	14	2.3	15	85	15	52	72	0	3	24	0.98
32878417--32878461	18	2.4	18	82	10	56	66	2	0	31	1.04
32886103--32886137	17	2.1	17	88	0	52	54	2	0	42	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32886218--32886268	26	1.9	27	84	11	70	37	25	13	23	1.92
32887902--32888036	29	4.6	30	83	2	157	38	22	4	34	1.74
32887902--32888036	59	2.3	58	85	6	191	38	22	4	34	1.74
32887992--32888123	59	2.2	58	81	5	140	34	27	2	36	1.70
32887903--32888121	29	7.4	30	74	13	95	35	25	3	35	1.74
32888024--32888160	58	2.3	59	84	10	183	32	27	1	38	1.66
32887933--32888161	29	7.8	30	71	18	108	34	25	2	37	1.70
32894961--32895007	23	2.0	24	91	4	78	36	8	4	51	1.52
32895412--32895473	24	2.5	24	76	12	72	41	0	0	58	0.98
32914545--32914623	30	2.6	30	86	7	99	49	6	2	41	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125